Kifap3 (kinesin-associated protein 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Kifap3 (kinesin-associated protein 3) Mus musculus
Analyze
Symbol: Kifap3
Name: kinesin-associated protein 3
RGD ID: 1313073
MGI Page MGI
Description: Enables intraciliary transport particle B binding activity. Involved in anterograde dendritic transport of neurotransmitter receptor complex. Acts upstream of or within several processes, including negative regulation of apoptotic process; negative regulation of neuroblast proliferation; and positive regulation of calcium-dependent cell-cell adhesion. Located in several cellular components, including cytoskeleton; periciliary membrane compartment; and photoreceptor cell cilium. Part of kinesin II complex. Is active in glutamatergic synapse and postsynapse. Is expressed in embryo mesenchyme; heart; nervous system; and sensory organ. Orthologous to human KIFAP3 (kinesin associated protein 3).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: KA; KAP-3; KAP3; SMAP; Smg GDS
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,589,711 - 163,744,676 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,607,152 - 163,744,678 (+)EnsemblGRCm39 Ensembl
GRCm381163,762,138 - 163,917,107 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,779,583 - 163,917,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv371165,709,810 - 165,847,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,616,354 - 165,753,775 (+)NCBIMGSCv36mm8
Celera1166,219,175 - 166,357,571 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map171.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8710890   PMID:8889548   PMID:10349636   PMID:10793158   PMID:10922068   PMID:10964600   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12821668   PMID:14610273  
PMID:15489334   PMID:15782199   PMID:15834408   PMID:16141072   PMID:16141073   PMID:16298999   PMID:16602821   PMID:17825299   PMID:19088126   PMID:19384852   PMID:19940036   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:22632975   PMID:23640485   PMID:23750925   PMID:23954693   PMID:30973865   PMID:31461655   PMID:31746486   PMID:32492419   PMID:34133714   PMID:34321999  
PMID:36265442   PMID:38187761   PMID:38355793  


Genomics

Comparative Map Data
Kifap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,589,711 - 163,744,676 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,607,152 - 163,744,678 (+)EnsemblGRCm39 Ensembl
GRCm381163,762,138 - 163,917,107 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1163,779,583 - 163,917,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv371165,709,810 - 165,847,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,616,354 - 165,753,775 (+)NCBIMGSCv36mm8
Celera1166,219,175 - 166,357,571 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map171.08NCBI
KIFAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,921,329 - 170,085,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,921,326 - 170,085,208 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,890,470 - 170,043,836 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,157,094 - 168,310,503 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,622,127 - 166,775,537NCBI
Celera1143,000,253 - 143,153,688 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1141,112,974 - 141,266,563 (-)NCBIHuRef
CHM1_11171,312,642 - 171,466,210 (-)NCBICHM1_1
T2T-CHM13v2.01169,277,046 - 169,441,099 (-)NCBIT2T-CHM13v2.0
Kifap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81378,660,849 - 78,797,821 (+)NCBIGRCr8
mRatBN7.21376,127,702 - 76,264,654 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1376,127,696 - 76,264,650 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1378,756,196 - 78,882,717 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01380,065,273 - 80,187,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01377,319,837 - 77,441,633 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01382,072,497 - 82,217,256 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1382,072,497 - 82,217,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01386,953,053 - 87,089,644 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41379,544,010 - 79,673,768 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11379,558,313 - 79,686,817 (+)NCBI
Celera1375,872,613 - 75,998,359 (+)NCBICelera
Cytogenetic Map13q22NCBI
KIFAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2179,677,007 - 79,841,101 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,349,883 - 79,513,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,410,755 - 145,564,248 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11149,127,544 - 149,280,831 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1149,127,548 - 149,280,831 (-)Ensemblpanpan1.1panPan2
KIFAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1728,581,855 - 28,739,327 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl728,593,425 - 28,739,272 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha728,113,580 - 28,271,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0728,383,601 - 28,541,435 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,395,164 - 28,542,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1728,232,563 - 28,390,147 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0728,267,598 - 28,425,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0728,504,316 - 28,661,873 (+)NCBIUU_Cfam_GSD_1.0
Kifap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934498,789,040 - 98,930,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648116,663,974 - 16,779,428 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648116,664,025 - 16,777,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIFAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl480,921,682 - 81,108,360 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1480,922,032 - 81,105,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2488,552,950 - 88,734,332 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIFAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12558,983,180 - 59,130,431 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2558,983,207 - 59,130,074 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605560,638,540 - 60,786,174 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kifap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480510,416,095 - 10,504,234 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480510,381,217 - 10,521,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:754
Count of miRNA genes:293
Interacting mature miRNAs:327
Transcripts:ENSMUST00000027877, ENSMUST00000077642
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156602037168186402Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156602037168186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU701040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D50367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027877   ⟹   ENSMUSP00000027877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,607,152 - 163,744,678 (+)Ensembl
GRCm38.p6 Ensembl1163,779,583 - 163,917,109 (+)Ensembl
Ensembl Acc Id: ENSMUST00000077642   ⟹   ENSMUSP00000076830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,607,152 - 163,744,678 (+)Ensembl
GRCm38.p6 Ensembl1163,779,583 - 163,917,109 (+)Ensembl
RefSeq Acc Id: NM_001305643   ⟹   NP_001292572
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391163,607,152 - 163,744,676 (+)NCBI
GRCm381163,779,583 - 163,917,107 (+)NCBI
Sequence:
RefSeq Acc Id: NM_010629   ⟹   NP_034759
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391163,607,152 - 163,744,676 (+)NCBI
GRCm381163,779,583 - 163,917,107 (+)NCBI
MGSCv371165,709,810 - 165,847,231 (+)RGD
Celera1166,219,175 - 166,357,571 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496679   ⟹   XP_006496742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391163,589,712 - 163,744,673 (+)NCBI
GRCm381163,762,139 - 163,917,104 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496681   ⟹   XP_006496744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391163,589,711 - 163,744,673 (+)NCBI
GRCm381163,762,138 - 163,917,104 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034759   ⟸   NM_010629
- Peptide Label: isoform KAP3B
- UniProtKB: Q3UZA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496744   ⟸   XM_006496681
- Peptide Label: isoform X2
- UniProtKB: Q3UZA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496742   ⟸   XM_006496679
- Peptide Label: isoform X1
- UniProtKB: Q3UZA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001292572   ⟸   NM_001305643
- Peptide Label: isoform KAP3A
- UniProtKB: P70189 (UniProtKB/Swiss-Prot),   Q6GTS3 (UniProtKB/Swiss-Prot),   P70188 (UniProtKB/Swiss-Prot),   Q3UZA5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027877   ⟸   ENSMUST00000027877
Ensembl Acc Id: ENSMUSP00000076830   ⟸   ENSMUST00000077642

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70188-F1-model_v2 AlphaFold P70188 1-793 view protein structure

Promoters
RGD ID:6875494
Promoter ID:EPDNEW_M1197
Type:initiation region
Name:Kifap3_1
Description:Mus musculus kinesin-associated protein 3 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381163,779,646 - 163,779,706EPDNEW
RGD ID:6817982
Promoter ID:MM_KWN:2668
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung
Transcripts:OTTMUST00000044067,   OTTMUST00000044068
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361165,709,541 - 165,710,041 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107566 AgrOrtholog
Ensembl Genes ENSMUSG00000026585 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027877 ENTREZGENE
  ENSMUST00000027877.7 UniProtKB/Swiss-Prot
  ENSMUST00000077642 ENTREZGENE
  ENSMUST00000077642.12 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Armadillo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16579 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107566 ENTREZGENE
NCBI Gene 16579 ENTREZGENE
PANTHER KINESIN-ASSOCIATED PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15605 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kifap3 PhenoGen
PROSITE ARM_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ARM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt KIFA3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  P70189 ENTREZGENE
  Q3UZA5 ENTREZGENE, UniProtKB/TrEMBL
  Q6GTS3 ENTREZGENE
  Q9CRX5_MOUSE UniProtKB/TrEMBL
UniProt Secondary P70189 UniProtKB/Swiss-Prot
  Q6GTS3 UniProtKB/Swiss-Prot