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Gene: Lrrc3b (leucine rich repeat containing 3B) Rattus norvegicus

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Symbol:

Lrrc3b

Name:

leucine rich repeat containing 3B

RGD ID:

1311897

Description:

Predicted to be located in membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRC3B (leucine rich repeat containing 3B); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leucine-rich repeat-containing protein 3B; LOC305705; RGD1311897; similar to CDNA sequence BC019794

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LRRC3B (leucine rich repeat containing 3B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, PhylomeDB, Treefam
Mus musculus (house mouse):	Lrrc3b (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lrrc3b (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LRRC3B (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LRRC3B (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lrrc3b (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LRRC3B (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LRRC3B (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lrrc3b (leucine rich repeat containing 3B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LRRC3B (leucine rich repeat containing 3B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lrrc3b (leucine rich repeat containing 3B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lrrc3b (leucine rich repeat containing 3B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ltl	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	lrrc3b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	12,404,309 - 12,481,618 (+)	NCBI		GRCr8
mRatBN7.2	15	9,973,580 - 10,050,891 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	9,969,983 - 10,051,066 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	12,107,545 - 12,184,909 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	13,024,702 - 13,102,448 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	11,320,812 - 11,398,172 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	11,221,161 - 11,299,563 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	11,298,478 - 11,299,257 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	15,263,496 - 15,339,800 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	11,523,924 - 11,525,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	11,446,989 - 11,525,148 (+)	NCBI
Celera	15	9,982,189 - 10,061,691 (+)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc3b	Rat	Breast Neoplasms		ISO	LRRC3B (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:29915430
Lrrc3b	Rat	Colorectal Neoplasms		ISO	LRRC3B (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18815942
Lrrc3b	Rat	Stomach Neoplasms		ISO	LRRC3B (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18757430

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc3b	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Lrrc3b (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of LRRC3B mRNA	CTD	PMID:21570461
Lrrc3b	Rat	2,4-dibromophenyl 2,4,5-tribromophenyl ether	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	2 more ...	CTD	PMID:26705709
Lrrc3b	Rat	5-aza-2'-deoxycytidine	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[[Decitabine co-treated with trichostatin A] affects the methylation of LRRC3B promoter] which affects the expression of LRRC3B mRNA more ...	CTD	PMID:18377727 more ...
Lrrc3b	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of LRRC3B mRNA	CTD	PMID:25825206
Lrrc3b	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of LRRC3B mRNA	CTD	PMID:28959563
Lrrc3b	Rat	acrylamide	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	Acrylamide results in decreased expression of LRRC3B mRNA	CTD	PMID:32763439
Lrrc3b	Rat	aflatoxin B1	decreases methylation	ISO	LRRC3B (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of LRRC3B gene	CTD	PMID:27153756
Lrrc3b	Rat	aldehydo-D-glucose	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of LRRC3B mRNA	CTD	PMID:37567420
Lrrc3b	Rat	all-trans-retinoic acid	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	Tretinoin results in decreased expression of LRRC3B mRNA	CTD	PMID:21934132
Lrrc3b	Rat	all-trans-retinoic acid	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of LRRC3B mRNA	CTD	PMID:36189433
Lrrc3b	Rat	all-trans-retinoic acid	decreases expression	ISO	Lrrc3b (Mus musculus)	6480464	Tretinoin results in decreased expression of LRRC3B mRNA	CTD	PMID:36189433
Lrrc3b	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of LRRC3B mRNA	CTD	PMID:35163327
Lrrc3b	Rat	arsane	affects methylation	ISO	LRRC3B (Homo sapiens)	6480464	Arsenic affects the methylation of LRRC3B gene	CTD	PMID:25304211
Lrrc3b	Rat	arsenic atom	affects methylation	ISO	LRRC3B (Homo sapiens)	6480464	Arsenic affects the methylation of LRRC3B gene	CTD	PMID:25304211
Lrrc3b	Rat	arsenous acid	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of LRRC3B mRNA	CTD	PMID:26705709
Lrrc3b	Rat	benzo[a]pyrene	increases methylation	ISO	LRRC3B (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of LRRC3B exon	CTD	PMID:27901495
Lrrc3b	Rat	benzo[a]pyrene	affects methylation	ISO	LRRC3B (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of LRRC3B 5' UTR and Benzo(a)pyrene affects the methylation of LRRC3B promoter	CTD	PMID:27901495
Lrrc3b	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	LRRC3B (Homo sapiens)	6480464	Diethylhexyl Phthalate results in increased expression of LRRC3B mRNA	CTD	PMID:31163220
Lrrc3b	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of LRRC3B mRNA	CTD	PMID:25181051
Lrrc3b	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of LRRC3B mRNA	CTD	PMID:30816183
Lrrc3b	Rat	cadmium dichloride	increases expression	ISO	LRRC3B (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of LRRC3B mRNA	CTD	PMID:38568856
Lrrc3b	Rat	cantharidin	decreases expression	ISO	Lrrc3b (Mus musculus)	6480464	Cantharidin results in decreased expression of LRRC3B mRNA	CTD	PMID:36907384
Lrrc3b	Rat	CGP 52608	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to LRRC3B gene]	CTD	PMID:28238834
Lrrc3b	Rat	chloroprene	decreases expression	ISO	Lrrc3b (Mus musculus)	6480464	Chloroprene results in decreased expression of LRRC3B mRNA	CTD	PMID:23125180
Lrrc3b	Rat	cyclosporin A	decreases methylation	ISO	LRRC3B (Homo sapiens)	6480464	Cyclosporine results in decreased methylation of LRRC3B promoter	CTD	PMID:27989131
Lrrc3b	Rat	D-glucose	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of LRRC3B mRNA	CTD	PMID:37567420
Lrrc3b	Rat	decabromodiphenyl ether	increases expression	EXP		6480464	decabromobiphenyl ether results in increased expression of LRRC3B mRNA	CTD	PMID:23914054
Lrrc3b	Rat	diarsenic trioxide	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of LRRC3B mRNA	CTD	PMID:26705709
Lrrc3b	Rat	dorsomorphin	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Lrrc3b	Rat	entinostat	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	entinostat results in decreased expression of LRRC3B mRNA	CTD	PMID:26272509
Lrrc3b	Rat	entinostat	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	fructose	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of LRRC3B mRNA	CTD	PMID:37567420
Lrrc3b	Rat	genistein	decreases expression	ISO	Lrrc3b (Mus musculus)	6480464	Genistein results in decreased expression of LRRC3B mRNA	CTD	PMID:32186404
Lrrc3b	Rat	glucose	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of LRRC3B mRNA	CTD	PMID:37567420
Lrrc3b	Rat	lead(0)	affects expression	ISO	LRRC3B (Homo sapiens)	6480464	Lead affects the expression of LRRC3B mRNA	CTD	PMID:28903495
Lrrc3b	Rat	mercury dibromide	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	mercuric bromide results in decreased expression of LRRC3B mRNA	CTD	PMID:26272509
Lrrc3b	Rat	mercury dibromide	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	methylmercury chloride	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of LRRC3B mRNA	CTD	PMID:28001369
Lrrc3b	Rat	mono(2-ethylhexyl) phthalate	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of LRRC3B mRNA	CTD	PMID:36189433
Lrrc3b	Rat	p-chloromercuribenzoic acid	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	p-Chloromercuribenzoic Acid results in decreased expression of LRRC3B mRNA	CTD	PMID:26272509
Lrrc3b	Rat	p-chloromercuribenzoic acid	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	panobinostat	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	panobinostat	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	panobinostat results in decreased expression of LRRC3B mRNA	CTD	PMID:26272509
Lrrc3b	Rat	paracetamol	affects expression	ISO	Lrrc3b (Mus musculus)	6480464	Acetaminophen affects the expression of LRRC3B mRNA	CTD	PMID:17562736
Lrrc3b	Rat	perfluorohexanesulfonic acid	increases expression	ISO	Lrrc3b (Mus musculus)	6480464	perfluorohexanesulfonic acid results in increased expression of LRRC3B mRNA	CTD	PMID:37995155
Lrrc3b	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of LRRC3B mRNA	CTD	PMID:35163327
Lrrc3b	Rat	phenylmercury acetate	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	pioglitazone	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[N-nitroso-tris-chloroethylurea co-treated with pioglitazone] results in decreased expression of LRRC3B mRNA	CTD	PMID:27935865
Lrrc3b	Rat	potassium dichromate	decreases expression	ISO	Lrrc3b (Mus musculus)	6480464	Potassium Dichromate results in decreased expression of LRRC3B mRNA	CTD	PMID:23608068
Lrrc3b	Rat	rotenone	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	Rotenone results in decreased expression of LRRC3B mRNA	CTD	PMID:29955902
Lrrc3b	Rat	SB 431542	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Lrrc3b	Rat	sodium arsenite	increases expression	ISO	LRRC3B (Homo sapiens)	6480464	sodium arsenite results in increased expression of LRRC3B mRNA	CTD	PMID:38568856
Lrrc3b	Rat	sulforaphane	increases expression	ISO	Lrrc3b (Mus musculus)	6480464	sulforaphane results in increased expression of LRRC3B mRNA	CTD	PMID:30529165
Lrrc3b	Rat	trichostatin A	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[[Decitabine co-treated with trichostatin A] affects the methylation of LRRC3B promoter] which affects the expression of LRRC3B mRNA more ...	CTD	PMID:18757430 and PMID:27188386
Lrrc3b	Rat	trichostatin A	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	trichostatin A results in decreased expression of LRRC3B mRNA	CTD	PMID:24935251 more ...
Lrrc3b	Rat	valproic acid	affects expression	ISO	LRRC3B (Homo sapiens)	6480464	Valproic Acid affects the expression of LRRC3B mRNA	CTD	PMID:25979313
Lrrc3b	Rat	valproic acid	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	Valproic Acid results in decreased expression of LRRC3B mRNA	CTD	PMID:23179753 more ...
Lrrc3b	Rat	valproic acid	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	vorinostat	multiple interactions	ISO	LRRC3B (Homo sapiens)	6480464	[NOG protein co-treated with Vorinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of LRRC3B mRNA	CTD	PMID:27188386
Lrrc3b	Rat	vorinostat	decreases expression	ISO	LRRC3B (Homo sapiens)	6480464	vorinostat results in decreased expression of LRRC3B mRNA	CTD	PMID:26272509
Lrrc3b	Rat	XL147	multiple interactions	ISO	Lrrc3b (Mus musculus)	6480464	[N-nitroso-tris-chloroethylurea co-treated with XL147] results in decreased expression of LRRC3B mRNA	CTD	PMID:27935865

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc3b	Rat	extracellular matrix	is_active_in	IBA	MGI:3036284 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lrrc3b	Rat	extracellular space	is_active_in	IBA	FB:FBgn0268063 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lrrc3b	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc3b	Rat	protein binding	enables	ISO	LRRC3B (Homo sapiens)	1624291	UniProtKB:P11049 more ...	RGD	PMID:32296183

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:20080187

Lrrc3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	12,404,309 - 12,481,618 (+)	NCBI		GRCr8
mRatBN7.2	15	9,973,580 - 10,050,891 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	9,969,983 - 10,051,066 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	12,107,545 - 12,184,909 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	13,024,702 - 13,102,448 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	11,320,812 - 11,398,172 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	11,221,161 - 11,299,563 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	11,298,478 - 11,299,257 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	15,263,496 - 15,339,800 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	11,523,924 - 11,525,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	11,446,989 - 11,525,148 (+)	NCBI
Celera	15	9,982,189 - 10,061,691 (+)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

LRRC3B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	26,622,772 - 26,710,776 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	26,622,772 - 26,717,537 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	26,664,263 - 26,752,267 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	26,639,304 - 26,727,271 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	26,639,303 - 26,727,267	NCBI
Celera	3	26,600,894 - 26,688,865 (+)	NCBI		Celera
Cytogenetic Map	3	p24.1	NCBI
HuRef	3	26,607,531 - 26,695,409 (+)	NCBI		HuRef
CHM1_1	3	26,614,322 - 26,702,255 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	26,625,372 - 26,713,383 (+)	NCBI		T2T-CHM13v2.0

Lrrc3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	7,030,776 - 7,112,248 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	7,030,776 - 7,112,248 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	15,357,515 - 15,438,987 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	15,357,515 - 15,438,987 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	16,190,029 - 16,271,501 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	14,150,787 - 14,232,140 (-)	NCBI		MGSCv36	mm8
Celera	14	11,035,950 - 11,116,191 (-)	NCBI		Celera
Cytogenetic Map	14	A1	NCBI
cM Map	14	7.08	NCBI

Lrrc3b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	18,351,763 - 18,440,120 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	18,351,763 - 18,440,120 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC3B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	26,577,882 - 26,665,060 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	26,582,643 - 26,676,611 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	26,518,378 - 26,609,907 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	26,847,229 - 26,940,500 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	26,932,929 - 26,933,708 (+)	Ensembl	panpan1.1		panPan2

LRRC3B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	17,300,448 - 17,386,203 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	17,300,769 - 17,301,548 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	17,298,781 - 17,384,342 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	17,601,654 - 17,687,281 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	17,601,975 - 17,602,754 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	17,426,475 - 17,512,018 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	17,538,885 - 17,624,504 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	17,602,411 - 17,687,615 (-)	NCBI		UU_Cfam_GSD_1.0

Lrrc3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	184,814,191 - 184,899,046 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	17,952,887 - 18,037,619 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	17,952,525 - 18,038,537 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	13,327,220 - 13,420,223 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	13,327,030 - 13,420,216 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	14,844,985 - 14,937,138 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC3B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	71,260,811 - 71,349,584 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	71,348,482 - 71,349,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	44,415,643 - 44,520,224 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc3b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624788	4,556,975 - 4,559,059 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624788	4,470,143 - 4,559,059 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lrrc3b
477 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	116
Count of miRNA genes:	92
Interacting mature miRNAs:	104
Transcripts:	ENSRNOT00000007672
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2266368	22711984	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1058250	14481294	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	29912054	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat

RH137538

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	10,050,674 - 10,050,796 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	11,299,352 - 11,299,473	NCBI	Rnor6.0
Rnor_5.0	15	15,339,589 - 15,339,710	UniSTS	Rnor5.0
RGSC_v3.4	15	11,524,930 - 11,525,051	UniSTS	RGSC3.4
Celera	15	10,061,480 - 10,061,601	UniSTS
Cytogenetic Map	15	p16	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	63	62	31	25	31	6	186	97	93	41	60	31


RefSeq Transcripts	NM_001399495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002725036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007672 ⟹ ENSRNOP00000007672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	9,975,106 - 10,051,066 (+)	Ensembl
Rnor_6.0 Ensembl	15	11,298,478 - 11,299,257 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094588 ⟹ ENSRNOP00000085779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	10,036,615 - 10,051,066 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106822 ⟹ ENSRNOP00000089225

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	9,969,983 - 10,051,066 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117616 ⟹ ENSRNOP00000081685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	9,975,275 - 10,050,887 (+)	Ensembl

RefSeq Acc Id:

NM_001399495 ⟹ NP_001386424

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	12,404,309 - 12,481,618 (+)	NCBI
mRatBN7.2	15	9,973,580 - 10,050,891 (+)	NCBI

RefSeq Acc Id:

XM_006251719 ⟹ XP_006251781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	12,404,434 - 12,481,618 (+)	NCBI
mRatBN7.2	15	9,975,028 - 10,050,891 (+)	NCBI
Rnor_6.0	15	11,221,161 - 11,299,563 (+)	NCBI
Rnor_5.0	15	15,263,496 - 15,339,800 (+)	NCBI

Sequence:

show sequence

AGGCCCTGGGTTCGGTCCTCAGCTCCGGAAAAAAAAAATCAAACATAAGATCGCATAGTCAACAATTGGGAAGGCCTGGAGACGCAAGCTAGTTCTGTGAGATGTGAATTGTGAACTCCATTATGTCC
TGGGCCATCTTGTGTGATGGCTACACTTACACCCATCACCCACGACGGTAGTCATCTATAACAGTTCAATATCTGATATTTTATCAACCTTCCCTTGTTCATTCAGCAGTCTAGTGAGCATCTCTACA
GATACATTTTGTGTGTATTCTCAGTTATTTCCTGACTTCTGAGAAGTCGAATCATTGGCACAGTATCACAGACAAATTTTTATACTTCCAATGAGAATGCCAAGTTTTCCTTTGAATAATTATACCAA
ATTACCTACCTGCTATCCATGTGTATTTATTTCTAGGTCCCAAATTCTCAGTTTAAAAATGTTAAAAAGTGATGATAATTCAAAATCAGACTAATCAAATCACATTGTGAAATGTTAGAAATGCACGT
CGTAGAATACAAAGGTGTATGACCTGGCGCTGATTGACAGGGCACAGCTGCTCTGGGGGAGCAGTGGTTTGCATTTTTGTAGTGTGGCCAGACCCAGCATACTTCCAAACCCGCATAGAAAAGCACCA
TTTCGAATGTGGAGATGTTATCCGCTTTAACATGCTTGTGATGGGAAGCAAATGACAAAGACTCTCTGGTGGGTCTGCGTCTGCATTTCGTTTGCTCCAGCTGCTAGCTGCAGTGTGCCTGACTTCTG
CCCTGTGTATGAGCTCACCAGCATGGCTTTCTGGCCTGTGGGAGTTCAGCAAGGAAGTGAGAAAGGACCTGGGAGGAGATGAATTAAGAACAAAGAGAAGGGAGATAGCTGCGTACTGTCAGCAAATG
GGCCTGTGAAAATAGCTGTATGGCCCATTCCTCCAGAATCTAGAGGTTCTATCCCAAGATCTCCGTATTCCAGGGACACTGGAACTCGCTCCTCACGAAGGAGATGATCGTCGAATAGATGAGCACTC
CTTAAGTCCAATGGACTCAGTAGATGCAAAGTCTGTTGAATGCCTAGCAGGGTCTCACCGGAGAGTGAAATGATAAAAATCTATCACTATGTCAGTCCTAGAACAGATGGGAGATGAAAGTTGGCAAT
AGCATAGAGGAGAGAAAAAACGAATCCGGCCTGGGGTGGGGTCCAGAAAGAAAATTTGAAAGACTGTGGTGTGTGTTGAGCCTGGAAAGGCAAGTTGCTCAATCCTAAATTGGTTTCTGGTGCTGATC
TTAAAAATAATTAAAGTCATGAAATAAGATTATTACCAAAACCAGTAATTCTGTCTCTGTCTCTCTAACACACACACACACACACACACACACACACACACACACACACACACACACCTTAAGGCACT
ATTTCTACTGCACAATTCACAAATCCATCCCTGGGAAGAACAGGGAATCCTGGGGAAGCAGGGAGCACTACCCATTGCATAAACGCTCGGCAGTCGGGGTACACTCATCGGAAAATATGACAACAGAA
CCTTAGGTTGGGGTACAGTCTTCTGTCTCACCCTTCAAAATAGTCTAGCACAGTACTTGGCACCCAATAAGTCATTGGTGGAATTAATTTTTAAATGTTTGCTTTTTCGCTGTTGACAGCAATGGTCC
TAGACTAAACAGTTCCCTCTGGGGCCAGAGCAACATGTCCCGGAACTGGGCAAGAGGAGGCAAGAGCAGAGGGGAAGCTAAGGTTCCTACCTAAGCTCTGCTTCTTTAGCAAAAGCTGAATGAAGCCC
CTCCCCTCCTCATTCAGGACCTCCAGCTACGCGGCAGAGAGCAGTGCCAGCTAGGTGATAGCCAGCTCTGCCAGTCACGTTCACTCGCTCTAGCTTGTCTAGTCCCAGAAGCCTCGCCCCTCCTCCAT
CCCCAGTCCAGGTTTGGAGGCGAGTCCCCTCTAGTGACTGAGCCGCCTGCTTGTTGGCGAGTGGCTTTCTGCCTCCCTCGCATCTTTGTCTCCTCCTCCAGCGAGGCTCCCGCACCCCGCACAGGGTC
TGCAGCGGCCGCCGCAGCAGTGAAAGCCAAGTCGTGCCCCACACGGCAGCCCGGGGCCGCACCCTCGCTCGGTGGCGGCGCGCAAAGACGCCAGCCGCGCCACGCACCGCCTGCGTCCTGCGCCCTGG
CCACAGCGCATCCACGCCGCCGCGGCGGTCGCTCCGGAGCGGAGCCCGGCCGGCGGGCCGGGTCAGGGTGGATAGCCCAGTTTGCAGTCTGCTGGAGCTGGCGGCCGCTGCAGCCCCGGCAGCGCGCA
CACCCCTAGGCATACGCACCAAACGCCTCCTCCCTGCGCCACGAGGATGGAGCAGCCATCCCAATCCAGGACTGGCGCAAGGTAAGGTACAGCCGCCTGTTGCTTTACGCAGAGCGCGGGATCAGCTC
CCAGTCAGGGTGCTTAGGCCATCTCTCTGGGAAGCAGAGAACGGTCACCGCAGTTCTGAGCCGTGTTGGTCCAAACCTCCAGGTCCGTTTGACACAGATCTTTGGAGAGACCCTGCCTGGAGAAGGGA
AGTCGACCCTTTTCGCTCTTGTGCAACCAGGTGCCTTGCAGCAGTCTGCAAACTTTTGTGACCCTCCCTGCGTGGTTCTCACCTGGTGCGGTGTCTGTTCAGTTCTTGCGTGCGCCCTTCCCCCAGCT
CCCCTAGCTTTAACGCATCTGCCCATTTCTCTCACTGGGTTCTTGCAGTTCGACTTTTTGCTCCCTGCAGTTCCGGATCCAGAGGCTTGGGATCTAGTAGTGCTTCTCCTGCCTGTCGCAGTTGGGTA
GGGGCAGAGAGGGCGAACCAGGAGAGGTGGGACTTAAGGGAATGCTGCTGTCACCCAGGGTCTTCATCAAGAGCGGTGGGTGTCAGACCGCTCGAGCCCGCCACCCCTAAGTCGATAATAAAAACCCT
CGGAGTGGCTTTCGGTTGCGGTTATATGCTGTGGGAAATGCAAGTGCTGATCTGGGTGGGTGAAGTAAGTGGTTCTGGGAGGAAAAGATCCCTCTTGAGGATGCGGGAGGCAGCGGAGGATGAGATCT
GCCCAAGGATGAGGGGGGCGGAAAAGCTCTGCAAATGTGGGCGAAGGGGCACCTCAGCGTGGCCACTGAAGAGGATTTAGAGAAGAGATTGAAGTCCGGGTAGAGGTTGGGGGCGCTGGCCTGGATGT
GTAAATACAGGGGGAGGGGCTAGGTACCTGGGAGGTCCGGAGGTGGCAAGCAGCGCTGGAATTCCTGCCCCGGGGTATTTCGGAAGGCTGGCTGCTTCTGCCTAGGGTAGAAAGGACTCCCTTCCCAG
GAACAAACAAACCTCTCAGCTATATTCTGAATGCGTTGGCATCTTGGGCGGTGACTGAATGTTCAGAACATGAACCGAGGACGCTGTCCCTGGCTCCAAGAGGACCACAGCCCCTCTTCTTTCCGGCA
CCTGCTTGCTTCTACACCCCTTCATCTCCACCACCGGGGTCGGTAGATCTGTGCCCACCTTCTATGACAGCACTAGGGCGTCCAGGATGTTTCCACATTCCGGAATGGGAAGGGGACTCTTGATCTGA
TCCCTGGAGGGGGGGTATATGTGTAGGAAACTAAGGGGAATCCCCAGCTGTCAGCAGATAGGCTGGGGTCCCAACAATCCAGAGGAGAATCCAGGGCGGAGGCTGCTCTGGGAGACACCTTCCCCTGA
ATGCTTCAAGGTTTGTACCTGGGCGGAGCAAAGGAAGGAGTGGGGGAGCCCTTAGCTGGGTTAGGAAAGATCCTTAGCTTAAAGCTGGAGGGTGTGTGGAGAAATGCAGAAGGGGTGTGCACAGCTCC
TCCAAGTAAGAGAAGACCCAGCTTCTCGACCTGGTATCCGGAATCGGAGGTTCCCAAGCAAGGACTGGAATAATGAAGAAGGCTGTGTGCTAGCTGCATCCGTTTGAACCACCCAGGAAGGAAATCCA
GAGTGTGGTCAGAGGCAGAACCCTTGCAACACTTGGAGTGAATGAGGAATGGACTCGTGATTATGCAGAGGTTCCAGGATGAATCTGGTCGACCTGTGGCTGTCCCGCTCCCTCTCCATGTGTCTCCT
CCTCCAAAGCTTTGTCCTGATGATACTGTGTTTTCATTCTGCCAGTATGTGTCCCAAGGGCTGCCTTTGCTCTTCCTCTGGGGGGTTAAATGTCACCTGTAGCAATGCAAATCTCAAGGAAATACCCA
GAGATCTCCCTCCTGAAACGGTTTTGCTGTATCTGGACTCCAATCAGATCACATCCATCCCCAATGAGATTTTTAAGGACCTCCATCAACTGAGAGTTCTCAACCTGTCCAAAAATGGCATCGAGTTT
ATTGATGAGCATGCATTCAAAGGAGTTGCAGAAACCCTGCAGACCCTGGACTTGTCTGACAACAGGATTCAAAGCGTGCACAAAAATGCCTTCAATAATCTGAAGGCCAGGGCTAGGATTGCCAACAA
CCCGTGGCATTGTGACTGTACTCTCCAGCAAGTTCTGAGGAGCATGGCATCCAATCATGAGACAGCACACAATGTCATTTGCAAGACTTCAGTGTTGGATGAGCATGCTGGGAGACCTTTCCTCAATG
CTGCCAATGATGCTGACCTTTGTAACCTACCTAAAAAGACTACTGACTATGCCATGCTCGTCACCATGTTTGGCTGGTTCACCATGGTGATCTCTTATGTGGTGTACTACGTGAGGCAGAATCAGGAG
GATGCCCGGAGACACCTGGAATACTTGAAATCCCTGCCAAGCAGGCAAAAGAAGGCGGATGAACCTGATGACATTAGCACTGTGGTATAGCAACCACGCTGGCTGGCACTGGGAAGGGAGCTTCTGCT
TGTAGTAAAATAAGTGGTTCAGTTCTCCCTCCATTGTACACCATTAAAACTTTGTATTTCAGTTTCTTTGGAATCATGTCACTGTTGAACTTTTCACAAACAATACAAGTCTAATAATTTTAGTTTAG
ATGATGTCCCCCCATTAATTGTGACCCCCTGGTTCCTGAGTGACAAACTCTCTGAACATTAGTTAGACCCATCTCACTATTTAATAATGAAATTTATTTTTTTAATTTAAAACTGAATAAAAGCTTAA
CTTTGAACCATG

hide sequence

RefSeq Acc Id:

XM_017599839 ⟹ XP_017455328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	12,404,434 - 12,481,618 (+)	NCBI
mRatBN7.2	15	9,975,213 - 10,050,891 (+)	NCBI
Rnor_6.0	15	11,221,161 - 11,299,563 (+)	NCBI

Sequence:

show sequence

AGGCCCTGGGTTCGGTCCTCAGCTCCGGAAAAAAAAAATCAAACATAAGATCGCATAGTCAACA
ATTGGGAAGGCCTGGAGACGCAAGCTAGTTCTGTGAGATGTGAATTGTGAACTCCATTATGTCCTGGGCCATCTTGTGTGATGGCTACACTTACACCCATCACCCACGACGGTAGTCATCTATAACAG
TTCAATATCTGATATTTTATCAACCTTCCCTTGTTCATTCAGCAGTCTAGTGAGCATCTCTACAGATACATTTTGTGTGTATTCTCAGTTATTTCCTGACTTCTGAGAAGTCGAATCATTGGCACAGT
ATCACAGACAAATTTTTATACTTCCAATGAGAATGCCAAGTTTTCCTTTGAATAATTATACCAAATTACCTACCTGCTATCCATGTGTATTTATTTCTAGGTCCCAAATTCTCAGTTTAAAAATGTTA
AAAAGTGATGATAATTCAAAATCAGACTAATCAAATCACATTGTGAAATGTTAGAAATGCACGTCGTAGAATACAAAGGTGTATGACCTGGCGCTGATTGACAGGGCACAGCTGCTCTGGGGGAGCAG
TGGTTTGCATTTTTGTAGTGTGGCCAGACCCAGCATACTTCCAAACCCGCATAGAAAAGCACCATTTCGAATGTGGAGATGTTATCCGCTTTAACATGCTTGTGATGGGAAGCAAATGACAAAGACTC
TCTGGTGGGTCTGCGTCTGCATTTCGTTTGCTCCAGCTGCTAGCTGCAGTGTGCCTGACTTCTGCCCTGTGTATGAGCTCACCAGCATGGCTTTCTGGCCTGTGGGAGTTCAGCAAGGAAGTGAGAAA
GGACCTGGGAGGAGATGAATTAAGAACAAAGAGAAGGGAGATAGCTGCGTACTGTCAGCAAATGGGCCTGTGAAAATAGCTGTATGGCCCATTCCTCCAGAATCTAGAGGTTCTATCCCAAGATCTCC
GTATTCCAGGGACACTGGAACTCGCTCCTCACGAAGGAGATGATCGTCGAATAGATGAGCACTCCTTAAGTCCAATGGACTCAGTAGATGCAAAGTCTGTTGAATGCCTAGCAGGGTCTCACCGGAGA
GTGAAATGATAAAAATCTATCACTATGTCAGTCCTAGAACAGATGGGAGATGAAAGTTGGCAATAGCATAGAGGAGAGAAAAAACGAATCCGGCCTGGGGTGGGGTCCAGAAAGAAAATTTGAAAGAC
TGTGGTGTGTGTTGAGCCTGGAAAGGCAAGTTGCTCAATCCTAAATTGGTTTCTGGTGCTGATCTTAAAAATAATTAAAGTCATGAAATAAGATTATTACCAAAACCAGTAATTCTGTCTCTGTCTCT
CTAACACACACACACACACACACACACACACACACACACACACACACACACACCTTAAGGCACTATTTCTACTGCACAATTCACAAATCCATCCCTGGGAAGAACAGGGAATCCTGGGGAAGCAGGGA
GCACTACCCATTGCATAAACGCTCGGCAGTCGGGGTACACTCATCGGAAAATATGACAACAGAACCTTAGGTTGGGGTACAGTCTTCTGTCTCACCCTTCAAAATAGTCTAGCACAGTACTTGGCACC
CAATAAGTCATTGGTGGAATTAATTTTTAAATGTTTGCTTTTTCGCTGTTGACAGCAATGGTCCTAGACTAAACAGTTCCCTCTGGGGCCAGAGCAACATGTCCCGGAACTGGGCAAGAGGAGGCAAG
AGCAGAGGGGAAGCTAAGGTTCCTACCTAAGCTCTGCTTCTTTAGCAAAAGCTGAATGAAGCCCCTCCCCTCCTCATTCAGGACCTCCAGCTACGCGGCAGAGAGCAGTGCCAGCTAGGTGATAGCCA
GCTCTGCCAGTCACGTTCACTCGCTCTAGCTTGTCTAGTCCCAGAAGCCTCGCCCCTCCTCCATCCCCAGTCCAGGTTTGGAGGCGAGTCCCCTCTAGTGACTGAGCCGCCTGCTTGTTGGCGAGTGG
CTTTCTGCCTCCCTCGCATCTTTGTCTCCTCCTCCAGCGAGGCTCCCGCACCCCGCACAGGGTCTGCAGCGGCCGCCGCAGCAGTGAAAGCCAAGTCGTGCCCCACACGGCAGCCCGGGGCCGCACCC
TCGCTCGGTGGCGGCGCGCAAAGACGCCAGCCGCGCCACGCACCGCCTGCGTCCTGCGCCCTGGCCACAGCGCATCCACGCCGCCGCGGCGGTCGCTCCGGAGCGGAGCCCGGCCGGCGGGCCGGGTC
AGGGTGGATAGCCCAGTTTGCAGTCTGCTGGAGCTGGCGGCCGCTGCAGCCCCGGCAGCGCGCACACCCCTAGGCATACGCACCAAACGCCTCCTCCCTGCGCCACGAGGATGGAGCAGCCATCCCAA
TCCAGGACTGGCGCAAGGTAAGGTACAGCCGCCTGTTGCTTTACGCAGAGCGCGGGATCAGCTCCCAGTCAGGGTGCTTAGGCCATCTCTCTGGGAAGCAGAGAACGGTCACCGCAGTTCTGAGCCGT
GTTGGTCCAAACCTCCAGGTCCGTTTGACACAGATCTTTGGAGAGACCCTGCCTGGAGAAGGGAAGTCGACCCTTTTCGCTCTTGTGCAACCAGGTGCCTTGCAGCAGTCTGCAAACTTTTGTGACCC
TCCCTGCGTGGTTCTCACCTGGTGCGGTGTCTGTTCAGTTCTTGCGTGCGCCCTTCCCCCAGCTCCCCTAGCTTTAACGCATCTGCCCATTTCTCTCACTGGGTTCTTGCAGTTCGACTTTTTGCTCC
CTGCAGTTCCGGATCCAGAGGCTTGGGATCTAGTAGTGCTTCTCCTGCCTGTCGCAGTTGGGTAGGGGCAGAGAGGGCGAACCAGGAGAGGTGGGACTTAAGGGAATGCTGCTGTCACCCAGGGTCTT
CATCAAGAGCGGTGGGTGTCAGACCGCTCGAGCCCGCCACCCCTAAGTCGATAATAAAAACCCTCGGAGTGGCTTTCGGTTGCGGTTATATGCTGTGGGAAATGCAAGTGCTGATCTGGGTGGGTGAA
GTAAGTGGTTCTGGGAGGAAAAGATCCCTCTTGAGGATGCGGGAGGCAGCGGAGGATGAGATCTGCCCAAGGATGAGGGGGGCGGAAAAGCTCTGCAAATGTGGGCGAAGGGGCACCTCAGCGTGGCC
ACTGAAGAGGATTTAGAGAAGAGATTGAAGTCCGGGTAGAGGTTGGGGGCGCTGGCCTGGATGTGTAAATACAGGGGGAGGGGCTAGGTACCTGGGAGGTCCGGAGGTGGCAAGCAGCGCTGGAATTC
CTGCCCCGGGGTATTTCGGAAGGCTGGCTGCTTCTGCCTAGGGTAGAAAGGACTCCCTTCCCAGGAACAAACAAACCTCTCAGCTATATTCTGAATGCGTTGGCATCTTGGGCGGTGACTGAATGTTC
AGAACATGAACCGAGGACGCTGTCCCTGGCTCCAAGAGGACCACAGCCCCTCTTCTTTCCGGCACCTGCTTGCTTCTACACCCCTTCATCTCCACCACCGGGGTCGGTAGATCTGTGCCCACCTTCTA
TGACAGCACTAGGGCGTCCAGGATGTTTCCACATTCCGGAATGGGAAGGGGACTCTTGATCTGATCCCTGGAGGGGGGGTATATGTGTAGGAAACTAAGGGGAATCCCCAGCTGTCAGCAGATAGGCT
GGGGTCCCAACAATCCAGAGGAGAATCCAGGGCGGAGGCTGCTCTGGGAGACACCTTCCCCTGAATGCTTCAAGGTTTGTACCTGGGCGGAGCAAAGGAAGGAGTGGGGGAGCCCTTAGCTGGGTTAG
GAAAGATCCTTAGCTTAAAGCTGGAGGGTGTGTGGAGAAATGCAGAAGGGGTGTGCACAGCTCCTCCAAGTAAGAGAAGACCCAGCTTCTCGACCTGGTATCCGGAATCGGAGGTGGGTTTATCCACT
TTGCAGCCCCACCCCCACCCCCATATGTATCGTTCTGGTTGTTTCTGATGGTTTGGCGGACGCAGCAGTCATCTTTGCACCCCAGTCATCTGGCCTTCAAGACCACTTGTGGAAAGAGGCCTAGTGTA
GGCATTGCAAAAGAAGGGTGTCCTCACTCTTTCTTTATCTCTAAACCCCATCCCCCTTCCCTGGTGGAGAACACATCACCATGTATGAGAGAAGAGACACATAGCCCTCCTCACCCCATCTCCAGGGA
CGCTTCTGATTAAGAGTCCTGCCTAATCTCTAGTCCCTACCTAGTCCAGTGGGGAAGCATTTGGAGGCTATGCTGGTGTAGGGCTGTGGACAGCTCCCAGGTTCTCCTTGCATGAACTTCTCATATTT
TGGCTTTTAATAGAACAACCTTCCCTAGGTTGCCCTGGGATTGCCTCCCCTATCCTGTTCTATCTAGAGAAAAGCAGAATTGGAGTCATTTTGGCTATTTGGTCAGAGCCTTCTAGAAGAGAGTATCA
TGGTCACTCCCATACCCAGGCATACGTGAGGCAGCTAGCTTCCTGCTTCAGAACAGAGAGCTGTACAGAGCCCTAGGACCAAGAATGGGGATTCCCTCCACACAAGCTTCTGATGCATTTATGAGGCA
CAAAGTGTGGCCATGCCTTCTTCAGCCAGACCTGGCTGGTGACAGCACGCAGCTTCTTCTGATATACCTGGATATCTGAGGTTCCCAAGCAAGGACTGGAATAATGAAGAAGGCTGTGTGCTAGCTGC
ATCCGTTTGAACCACCCAGGAAGGAAATCCAGAGTGTGGTCAGAGGCAGAACCCTTGCAACACTTGGAGTGAATGAGGAATGGACTCGTGATTATGCAGAGGTTCCAGGATGAATCTGGTCGACCTGT
GGCTGTCCCGCTCCCTCTCCATGTGTCTCCTCCTCCAAAGCTTTGTCCTGATGATACTGTGTTTTCATTCTGCCAGTATGTGTCCCAAGGGCTGCCTTTGCTCTTCCTCTGGGGGGTTAAATGTCACC
TGTAGCAATGCAAATCTCAAGGAAATACCCAGAGATCTCCCTCCTGAAACGGTTTTGCTGTATCTGGACTCCAATCAGATCACATCCATCCCCAATGAGATTTTTAAGGACCTCCATCAACTGAGAGT
TCTCAACCTGTCCAAAAATGGCATCGAGTTTATTGATGAGCATGCATTCAAAGGAGTTGCAGAAACCCTGCAGACCCTGGACTTGTCTGACAACAGGATTCAAAGCGTGCACAAAAATGCCTTCAATA
ATCTGAAGGCCAGGGCTAGGATTGCCAACAACCCGTGGCATTGTGACTGTACTCTCCAGCAAGTTCTGAGGAGCATGGCATCCAATCATGAGACAGCACACAATGTCATTTGCAAGACTTCAGTGTTG
GATGAGCATGCTGGGAGACCTTTCCTCAATGCTGCCAATGATGCTGACCTTTGTAACCTACCTAAAAAGACTACTGACTATGCCATGCTCGTCACCATGTTTGGCTGGTTCACCATGGTGATCTCTTA
TGTGGTGTACTACGTGAGGCAGAATCAGGAGGATGCCCGGAGACACCTGGAATACTTGAAATCCCTGCCAAGCAGGCAAAAGAAGGCGGATGAACCTGATGACATTAGCACTGTGGTATAGCAACCAC
GCTGGCTGGCACTGGGAAGGGAGCTTCTGCTTGTAGTAAAATAAGTGGTTCAGTTCTCCCTCCATTGTACACCATTAAAACTTTGTATTTCAGTTTCTTTGGAATCATGTCACTGTTGAACTTTTCAC
AAACAATACAAGTCTAATAATTTTAGTTTAGATGATGTCCCCCCATTAATTGTGACCCCCTGGTTCCTGAGTGACAAACTCTCTGAACATTAGTTAGACCCATCTCACTATTTAATAATGAAATTTAT
TTTTTTAATTTAAAACTGAATAAAAGCTTAACTTTGAACCATG

hide sequence


Protein RefSeqs	NP_001386424	(Get FASTA)	NCBI Sequence Viewer
	XP_006251781	(Get FASTA)	NCBI Sequence Viewer
	XP_017455328	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94099	(Get FASTA)	NCBI Sequence Viewer
	EDL94100	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007672.4
	ENSRNOP00000081685.1
	ENSRNOP00000085779
	ENSRNOP00000085779.1
	ENSRNOP00000089225.1
	ENSRNOP00000102741

RefSeq Acc Id:	XP_006251781 ⟸ XM_006251719
- Peptide Label:	isoform X1
- UniProtKB:	D4A9I7 (UniProtKB/TrEMBL), A6K053 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNLVDLWLSRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSV HKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDIS TVV hide sequence

RefSeq Acc Id:	XP_017455328 ⟸ XM_017599839
- Peptide Label:	isoform X1
- UniProtKB:	D4A9I7 (UniProtKB/TrEMBL), A6K053 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNLVDLWLSRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPP ETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDA DLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDISTVV hide sequence

Ensembl Acc Id:

ENSRNOP00000007672 ⟸ ENSRNOT00000007672

Ensembl Acc Id:

ENSRNOP00000085779 ⟸ ENSRNOT00000094588

Ensembl Acc Id:

ENSRNOP00000081685 ⟸ ENSRNOT00000117616

Protein Domains

LRRNT

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9I7-F1-model_v2	AlphaFold	D4A9I7	1-259	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-14408	BioCyc
Ensembl Genes	ENSRNOG00000005857	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007672.6	UniProtKB/TrEMBL
	ENSRNOT00000094588	ENTREZGENE
	ENSRNOT00000094588.1	UniProtKB/TrEMBL
	ENSRNOT00000106822.1	UniProtKB/TrEMBL
	ENSRNOT00000117616.1	UniProtKB/TrEMBL
	ENSRNOT00000138177	ENTREZGENE
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR-contain_N	UniProtKB/TrEMBL
NCBI Gene	305705	ENTREZGENE
PANTHER	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	UniProtKB/TrEMBL
	LEUCINE RICH REPEAT CONTAINING 53	UniProtKB/TrEMBL
Pfam	LRR_1	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
PhenoGen	Lrrc3b	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005857	RatGTEx
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A6K053	ENTREZGENE, UniProtKB/TrEMBL
	D4A9I7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Lrrc3b	leucine rich repeat containing 3B	Lrrc3b_predicted	leucine rich repeat containing 3B (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Lrrc3b_predicted	leucine rich repeat containing 3B (predicted)	RGD1311897_predicted	similar to CDNA sequence BC019794 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1311897_predicted	similar to CDNA sequence BC019794 (predicted)	LOC305705_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305705_predicted	similar to CDNA sequence BC019794 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD