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Gene: LRRC3B (leucine rich repeat containing 3B) Canis lupus familiaris

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Symbol:

LRRC3B

Name:

leucine rich repeat containing 3B

RGD ID:

12240917

Description:

ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); Stomach Neoplasms (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 3B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	17,300,448 - 17,386,203 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	17,300,769 - 17,301,548 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	17,298,781 - 17,384,342 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	17,601,654 - 17,687,281 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	17,601,975 - 17,602,754 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	17,426,475 - 17,512,018 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	17,538,885 - 17,624,504 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	17,602,411 - 17,687,615 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LRRC3B	Dog	Breast Neoplasms		ISO	LRRC3B (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29915430
LRRC3B	Dog	Colorectal Neoplasms		ISO	LRRC3B (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:18815942
LRRC3B	Dog	Stomach Neoplasms		ISO	LRRC3B (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:18757430

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LRRC3B	Dog	extracellular matrix	is_active_in	IBA	MGI:3036284 more ...	150520179		GO_Central	GO_REF:0000033
LRRC3B	Dog	extracellular space	is_active_in	IBA	FB:FBgn0268063 more ...	150520179		GO_Central	GO_REF:0000033
LRRC3B	Dog	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
LRRC3B	Dog	protein binding	enables	ISO	UniProtKB:P11049 more ...	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:22301074

LRRC3B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	17,300,448 - 17,386,203 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	17,300,769 - 17,301,548 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	17,298,781 - 17,384,342 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	17,601,654 - 17,687,281 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	17,601,975 - 17,602,754 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	17,426,475 - 17,512,018 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	17,538,885 - 17,624,504 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	17,602,411 - 17,687,615 (-)	NCBI		UU_Cfam_GSD_1.0

LRRC3B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	26,622,772 - 26,710,776 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	26,622,772 - 26,717,537 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	26,664,263 - 26,752,267 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	26,639,304 - 26,727,271 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	26,639,303 - 26,727,267	NCBI
Celera	3	26,600,894 - 26,688,865 (+)	NCBI		Celera
Cytogenetic Map	3	p24.1	NCBI
HuRef	3	26,607,531 - 26,695,409 (+)	NCBI		HuRef
CHM1_1	3	26,614,322 - 26,702,255 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	26,625,372 - 26,713,383 (+)	NCBI		T2T-CHM13v2.0

Lrrc3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	7,030,776 - 7,112,248 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	7,030,776 - 7,112,248 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	15,357,515 - 15,438,987 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	15,357,515 - 15,438,987 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	16,190,029 - 16,271,501 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	14,150,787 - 14,232,140 (-)	NCBI		MGSCv36	mm8
Celera	14	11,035,950 - 11,116,191 (-)	NCBI		Celera
Cytogenetic Map	14	A1	NCBI
cM Map	14	7.08	NCBI

Lrrc3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	12,404,309 - 12,481,618 (+)	NCBI		GRCr8
mRatBN7.2	15	9,973,580 - 10,050,891 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	9,969,983 - 10,051,066 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	12,107,545 - 12,184,909 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	13,024,702 - 13,102,448 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	11,320,812 - 11,398,172 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	11,221,161 - 11,299,563 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	11,298,478 - 11,299,257 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	15,263,496 - 15,339,800 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	11,523,924 - 11,525,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	11,446,989 - 11,525,148 (+)	NCBI
Celera	15	9,982,189 - 10,061,691 (+)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

Lrrc3b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	18,351,763 - 18,440,120 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	18,351,763 - 18,440,120 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC3B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	26,577,882 - 26,665,060 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	26,582,643 - 26,676,611 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	26,518,378 - 26,609,907 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	26,847,229 - 26,940,500 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	26,932,929 - 26,933,708 (+)	Ensembl	panpan1.1		panPan2

Lrrc3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	184,814,191 - 184,899,046 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	17,952,887 - 18,037,619 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	17,952,525 - 18,038,537 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	13,327,220 - 13,420,223 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	13,327,030 - 13,420,216 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	14,844,985 - 14,937,138 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC3B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	71,260,811 - 71,349,584 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	71,348,482 - 71,349,258 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	44,415,643 - 44,520,224 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc3b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624788	4,556,975 - 4,559,059 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624788	4,470,143 - 4,559,059 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in LRRC3B
1146 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_005634346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005634348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005634349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014106810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014106811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022408564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038431625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038431626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038431627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038431628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038508111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038508112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038508113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038508114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038570181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038570182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038570183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038570184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038634372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038634373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038634374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038634375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_542758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005299808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005313764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005376709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005410645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000009132 ⟹ ENSCAFP00000008470

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	17,300,769 - 17,301,548 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845046337 ⟹ ENSCAFP00845036388

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	17,601,975 - 17,602,754 (-)	Ensembl

RefSeq Acc Id:

XM_014106810 ⟹ XP_013962285

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	17,300,448 - 17,383,712 (-)	NCBI
Dog10K_Boxer_Tasha	23	17,298,781 - 17,382,667 (-)	NCBI

Sequence:

show sequence

AAGGAGCGGGAACGGGGATTCCCTCAGCGCAGACTCCGGGTGCAGCTCCTGAGCACAAAGGCCACACCCTCACAGGCCAGGCGACGTGGGGATAGAGCGTGGGCTTCTGCCGAACTACCTGGACACCT
GAGGTACCCAAGCAAGGACAGGAATAATGAAGAGACACGTGTGTTAGTTGCAACCTTCTGAACCAAGCAAGAAGGAAATCAACAGTGTGGACAGGGCTGGAACCGTTGGCACGCTTGCTTGTTGGAGT
GAATGAGGAATGGGCTTGTGATTATGCTGACATTCCAGCATGAATCTGGTAGACCTGTGGTTAACCCGTTCCCTCTCCATGTGTCTCCTCCTACAAAGTTTTGTTCTTATGATACTGTGCTTTCATTC
TGCCAGTATGTGTCCCAAGGGCTGTCTCTGTTCTTCCTCTGGGGGTTTAAATGTCACCTGTAGCAATGCAAATCTCAAGGAAATACCTAGAGATCTTCCTCCTGAAACAGTCTTATTGTATCTGGACT
CCAATCAGATCACATCTATCCCCAATGAGATTTTTAAGGACCTCCATCAACTAAGAGTTCTCAACTTGTCCAAAAATGGCATTGAGTTTATCGATGAGCATGCCTTCAAAGGAGTAGCTGAAACCTTG
CAGACTCTGGACTTGTCTGACAACCGGATTCAAAGCGTGCACAAAAATGCCTTCAATAACCTGAAGGCCAGGGCCAGAATTGCCAACAATCCCTGGCACTGCGACTGTACTCTCCAGCAAGTTCTGAG
GAGCATGGCATCCAACCATGAGACAGCCCATAATGTGATCTGTAAGACTTCTGTGTTGGATGAACACGCCGGGAGACCATTCCTCAATGCTGCCAATGATGCTGACCTTTGTAACCTCCCGAAAAAGA
CTACCGATTATGCCATGCTGGTCACCATGTTTGGCTGGTTCACCATGGTGATCTCCTATGTGGTGTATTATGTGAGGCAAAACCAGGAGGATGCCCGGAGACACCTTGAATACTTGAAATCCCTGCCA
AGCAGGCAGAAGAAAGCGGATGAGCCCGATGACATTAGCACTGTGGTATAGCGTCTGGACAGACTGACACCGAGAAACAGATTCGTTTGCCGTTGCAATAGAATAAGTGGTTTACTTCTCCCATCCAT
TGTAAACATTTAAAACTTTGTATCTCCATTTCTTTTGAATTATGCCACTGTTGAACTTTTAACAAACATGATGACGTAACAACTCATTTTAGTTTAGGTGACCCACCCCTGAAATGTACCCCCAGTGG
TATAACCTGAGTAAGCTACTATCTGAACATAAGTTAGATCCATCTCACTATTTAATAATGAAATTTATTTTTTTAATTTAAAACCAAATAAAAGCTTAACTTTGAACCATGAAAAA

hide sequence

RefSeq Acc Id:

XM_014106811 ⟹ XP_013962286

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	17,300,448 - 17,385,336 (-)	NCBI
Dog10K_Boxer_Tasha	23	17,298,781 - 17,383,654 (-)	NCBI

Sequence:

show sequence

CTGTCTAGCACGGCGGGAGTCGGTCCATCCTTGCGAATGCCACCCCCAACTCGGTAATGAAACCCTTGGAGTGGCTTGCGGCTGTGTGCCGCGGGAACGGCAAGTGCAGATCCGGGTGGGTGAAGTAC
CCAAGCAAGGACAGGAATAATGAAGAGACACGTGTGTTAGTTGCAACCTTCTGAACCAAGCAAGAAGGAAATCAACAGTGTGGACAGGGCTGGAACCGTTGGCACGCTTGCTTGTTGGAGTGAATGAG
GAATGGGCTTGTGATTATGCTGACATTCCAGCATGAATCTGGTAGACCTGTGGTTAACCCGTTCCCTCTCCATGTGTCTCCTCCTACAAAGTTTTGTTCTTATGATACTGTGCTTTCATTCTGCCAGT
ATGTGTCCCAAGGGCTGTCTCTGTTCTTCCTCTGGGGGTTTAAATGTCACCTGTAGCAATGCAAATCTCAAGGAAATACCTAGAGATCTTCCTCCTGAAACAGTCTTATTGTATCTGGACTCCAATCA
GATCACATCTATCCCCAATGAGATTTTTAAGGACCTCCATCAACTAAGAGTTCTCAACTTGTCCAAAAATGGCATTGAGTTTATCGATGAGCATGCCTTCAAAGGAGTAGCTGAAACCTTGCAGACTC
TGGACTTGTCTGACAACCGGATTCAAAGCGTGCACAAAAATGCCTTCAATAACCTGAAGGCCAGGGCCAGAATTGCCAACAATCCCTGGCACTGCGACTGTACTCTCCAGCAAGTTCTGAGGAGCATG
GCATCCAACCATGAGACAGCCCATAATGTGATCTGTAAGACTTCTGTGTTGGATGAACACGCCGGGAGACCATTCCTCAATGCTGCCAATGATGCTGACCTTTGTAACCTCCCGAAAAAGACTACCGA
TTATGCCATGCTGGTCACCATGTTTGGCTGGTTCACCATGGTGATCTCCTATGTGGTGTATTATGTGAGGCAAAACCAGGAGGATGCCCGGAGACACCTTGAATACTTGAAATCCCTGCCAAGCAGGC
AGAAGAAAGCGGATGAGCCCGATGACATTAGCACTGTGGTATAGCGTCTGGACAGACTGACACCGAGAAACAGATTCGTTTGCCGTTGCAATAGAATAAGTGGTTTACTTCTCCCATCCATTGTAAAC
ATTTAAAACTTTGTATCTCCATTTCTTTTGAATTATGCCACTGTTGAACTTTTAACAAACATGATGACGTAACAACTCATTTTAGTTTAGGTGACCCACCCCTGAAATGTACCCCCAGTGGTATAACC
TGAGTAAGCTACTATCTGAACATAAGTTAGATCCATCTCACTATTTAATAATGAAATTTATTTTTTTAATTTAAAACCAAATAAAAGCTTAACTTTGAACCATGAAAAA

hide sequence

RefSeq Acc Id:

XM_022408564 ⟹ XP_022264272

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	17,300,448 - 17,386,203 (-)	NCBI
Dog10K_Boxer_Tasha	23	17,298,781 - 17,384,341 (-)	NCBI

Sequence:

show sequence

GCCCGGCCAGCCGCGGGGTGGGGAGCGCGGCCGCCGCAGTTCTGGCAGCTGCACACCCCCAGGCAGACGCATCCAACGCCTCCTCCCTGCGCCAGGAGGATGGAGCAGCCGCCCCGGCCCGGGACTGG
CGCAAGCTTTATCTCAGGTGGCCACTGAACAAGGAGCCGCTCCCGCAAGTGGTCTCTGGAAAGATTTATGTCTGAGTCTTCTTTTTGTTGACACTACAAAGACACCTCGTCGGAGCTGTCATCTCGGT
CATCTCAGAAAGAGGCTCAGGTACCCAAGCAAGGACAGGAATAATGAAGAGACACGTGTGTTAGTTGCAACCTTCTGAACCAAGCAAGAAGGAAATCAACAGTGTGGACAGGGCTGGAACCGTTGGCA
CGCTTGCTTGTTGGAGTGAATGAGGAATGGGCTTGTGATTATGCTGACATTCCAGCATGAATCTGGTAGACCTGTGGTTAACCCGTTCCCTCTCCATGTGTCTCCTCCTACAAAGTTTTGTTCTTATG
ATACTGTGCTTTCATTCTGCCAGTATGTGTCCCAAGGGCTGTCTCTGTTCTTCCTCTGGGGGTTTAAATGTCACCTGTAGCAATGCAAATCTCAAGGAAATACCTAGAGATCTTCCTCCTGAAACAGT
CTTATTGTATCTGGACTCCAATCAGATCACATCTATCCCCAATGAGATTTTTAAGGACCTCCATCAACTAAGAGTTCTCAACTTGTCCAAAAATGGCATTGAGTTTATCGATGAGCATGCCTTCAAAG
GAGTAGCTGAAACCTTGCAGACTCTGGACTTGTCTGACAACCGGATTCAAAGCGTGCACAAAAATGCCTTCAATAACCTGAAGGCCAGGGCCAGAATTGCCAACAATCCCTGGCACTGCGACTGTACT
CTCCAGCAAGTTCTGAGGAGCATGGCATCCAACCATGAGACAGCCCATAATGTGATCTGTAAGACTTCTGTGTTGGATGAACACGCCGGGAGACCATTCCTCAATGCTGCCAATGATGCTGACCTTTG
TAACCTCCCGAAAAAGACTACCGATTATGCCATGCTGGTCACCATGTTTGGCTGGTTCACCATGGTGATCTCCTATGTGGTGTATTATGTGAGGCAAAACCAGGAGGATGCCCGGAGACACCTTGAAT
ACTTGAAATCCCTGCCAAGCAGGCAGAAGAAAGCGGATGAGCCCGATGACATTAGCACTGTGGTATAGCGTCTGGACAGACTGACACCGAGAAACAGATTCGTTTGCCGTTGCAATAGAATAAGTGGT
TTACTTCTCCCATCCATTGTAAACATTTAAAACTTTGTATCTCCATTTCTTTTGAATTATGCCACTGTTGAACTTTTAACAAACATGATGACGTAACAACTCATTTTAGTTTAGGTGACCCACCCCTG
AAATGTACCCCCAGTGGTATAACCTGAGTAAGCTACTATCTGAACATAAGTTAGATCCATCTCACTATTTAATAATGAAATTTATTTTTTTAATTTAAAACCAAATAAAAGCTTAACTTTGAACCATG
AAAAA

hide sequence

RefSeq Acc Id:

XM_038431625 ⟹ XP_038287553

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	17,601,654 - 17,687,280 (-)	NCBI

RefSeq Acc Id:

XM_038431626 ⟹ XP_038287554

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	17,601,654 - 17,687,280 (-)	NCBI

RefSeq Acc Id:

XM_038431627 ⟹ XP_038287555

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	17,601,654 - 17,686,593 (-)	NCBI

RefSeq Acc Id:

XM_038431628 ⟹ XP_038287556

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	17,601,654 - 17,685,606 (-)	NCBI

RefSeq Acc Id:

XM_038508111 ⟹ XP_038364039

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	23	17,426,475 - 17,512,018 (-)	NCBI

RefSeq Acc Id:

XM_038508112 ⟹ XP_038364040

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	23	17,426,475 - 17,512,018 (-)	NCBI

RefSeq Acc Id:

XM_038508113 ⟹ XP_038364041

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	23	17,426,475 - 17,511,331 (-)	NCBI

RefSeq Acc Id:

XM_038508114 ⟹ XP_038364042

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	23	17,426,475 - 17,510,344 (-)	NCBI

RefSeq Acc Id:

XM_038570181 ⟹ XP_038426109

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	17,602,411 - 17,687,614 (-)	NCBI

RefSeq Acc Id:

XM_038570182 ⟹ XP_038426110

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	17,602,411 - 17,687,614 (-)	NCBI

RefSeq Acc Id:

XM_038570183 ⟹ XP_038426111

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	17,602,411 - 17,686,927 (-)	NCBI

RefSeq Acc Id:

XM_038570184 ⟹ XP_038426112

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	17,602,411 - 17,685,940 (-)	NCBI

RefSeq Acc Id:

XM_038634372 ⟹ XP_038490300

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	17,538,885 - 17,624,503 (-)	NCBI

RefSeq Acc Id:

XM_038634373 ⟹ XP_038490301

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	17,538,885 - 17,624,503 (-)	NCBI

RefSeq Acc Id:

XM_038634374 ⟹ XP_038490302

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	17,538,885 - 17,623,816 (-)	NCBI

RefSeq Acc Id:

XM_038634375 ⟹ XP_038490303

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	17,538,885 - 17,622,829 (-)	NCBI

RefSeq Acc Id:

XM_542758 ⟹ XP_542758

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	17,300,448 - 17,386,191 (-)	NCBI
Dog10K_Boxer_Tasha	23	17,298,781 - 17,384,341 (-)	NCBI

Sequence:

show sequence

GCGGGGTGGGGAGCGCGGCCGCCGCAGTTCTGGCAGCTGCACACCCCCAGGCAGACGCATCCAA
CGCCTCCTCCCTGCGCCAGGAGGATGGAGCAGCCGCCCCGGCCCGGGACTGGCGCAAGGTACCCAAGCAAGGACAGGAATAATGAAGAGACACGTGTGTTAGTTGCAACCTTCTGAACCAAGCAAGAA
GGAAATCAACAGTGTGGACAGGGCTGGAACCGTTGGCACGCTTGCTTGTTGGAGTGAATGAGGAATGGGCTTGTGATTATGCTGACATTCCAGCATGAATCTGGTAGACCTGTGGTTAACCCGTTCCC
TCTCCATGTGTCTCCTCCTACAAAGTTTTGTTCTTATGATACTGTGCTTTCATTCTGCCAGTATGTGTCCCAAGGGCTGTCTCTGTTCTTCCTCTGGGGGTTTAAATGTCACCTGTAGCAATGCAAAT
CTCAAGGAAATACCTAGAGATCTTCCTCCTGAAACAGTCTTATTGTATCTGGACTCCAATCAGATCACATCTATCCCCAATGAGATTTTTAAGGACCTCCATCAACTAAGAGTTCTCAACTTGTCCAA
AAATGGCATTGAGTTTATCGATGAGCATGCCTTCAAAGGAGTAGCTGAAACCTTGCAGACTCTGGACTTGTCTGACAACCGGATTCAAAGCGTGCACAAAAATGCCTTCAATAACCTGAAGGCCAGGG
CCAGAATTGCCAACAATCCCTGGCACTGCGACTGTACTCTCCAGCAAGTTCTGAGGAGCATGGCATCCAACCATGAGACAGCCCATAATGTGATCTGTAAGACTTCTGTGTTGGATGAACACGCCGGG
AGACCATTCCTCAATGCTGCCAATGATGCTGACCTTTGTAACCTCCCGAAAAAGACTACCGATTATGCCATGCTGGTCACCATGTTTGGCTGGTTCACCATGGTGATCTCCTATGTGGTGTATTATGT
GAGGCAAAACCAGGAGGATGCCCGGAGACACCTTGAATACTTGAAATCCCTGCCAAGCAGGCAGAAGAAAGCGGATGAGCCCGATGACATTAGCACTGTGGTATAGCGTCTGGACAGACTGACACCGA
GAAACAGATTCGTTTGCCGTTGCAATAGAATAAGTGGTTTACTTCTCCCATCCATTGTAAACATTTAAAACTTTGTATCTCCATTTCTTTTGAATTATGCCACTGTTGAACTTTTAACAAACATGATG
ACGTAACAACTCATTTTAGTTTAGGTGACCCACCCCTGAAATGTACCCCCAGTGGTATAACCTGAGTAAGCTACTATCTGAACATAAGTTAGATCCATCTCACTATTTAATAATGAAATTTATTTTTT
TAATTTAAAACCAAATAAAAGCTTAACTTTGAACCATGAAAAA

hide sequence

RefSeq Acc Id:

XR_005299808

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	17,618,130 - 17,687,281 (-)	NCBI

RefSeq Acc Id:

XR_005313764

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	23	17,315,258 - 17,384,342 (-)	NCBI

RefSeq Acc Id:

XR_005376709

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	17,618,908 - 17,687,615 (-)	NCBI

RefSeq Acc Id:

XR_005410645

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	17,555,402 - 17,624,504 (-)	NCBI


Protein RefSeqs	XP_013962285	(Get FASTA)	NCBI Sequence Viewer
	XP_013962286	(Get FASTA)	NCBI Sequence Viewer
	XP_022264272	(Get FASTA)	NCBI Sequence Viewer
	XP_038287553	(Get FASTA)	NCBI Sequence Viewer
	XP_038287554	(Get FASTA)	NCBI Sequence Viewer
	XP_038287555	(Get FASTA)	NCBI Sequence Viewer
	XP_038287556	(Get FASTA)	NCBI Sequence Viewer
	XP_038364039	(Get FASTA)	NCBI Sequence Viewer
	XP_038364040	(Get FASTA)	NCBI Sequence Viewer
	XP_038364041	(Get FASTA)	NCBI Sequence Viewer
	XP_038364042	(Get FASTA)	NCBI Sequence Viewer
	XP_038426109	(Get FASTA)	NCBI Sequence Viewer
	XP_038426110	(Get FASTA)	NCBI Sequence Viewer
	XP_038426111	(Get FASTA)	NCBI Sequence Viewer
	XP_038426112	(Get FASTA)	NCBI Sequence Viewer
	XP_038490300	(Get FASTA)	NCBI Sequence Viewer
	XP_038490301	(Get FASTA)	NCBI Sequence Viewer
	XP_038490302	(Get FASTA)	NCBI Sequence Viewer
	XP_038490303	(Get FASTA)	NCBI Sequence Viewer
	XP_542758	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000008470.3
	ENSCAFP00030034754.1
	ENSCAFP00040034929.1
	ENSCAFP00845036388
	ENSCAFP00845036388.1

RefSeq Acc Id:

XP_542758 ⟸ XM_542758

- UniProtKB:

A0A8C0PCQ9 (UniProtKB/TrEMBL), A0A8C0LL90 (UniProtKB/TrEMBL), A0A8I3PY28 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSV
HKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDIS
TVV

hide sequence

RefSeq Acc Id:

XP_013962286 ⟸ XM_014106811

- UniProtKB:

A0A8C0PCQ9 (UniProtKB/TrEMBL), A0A8C0LL90 (UniProtKB/TrEMBL), A0A8I3PY28 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPP
ETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDA
DLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDISTVV

hide sequence

RefSeq Acc Id:

XP_013962285 ⟸ XM_014106810

- UniProtKB:

A0A8C0PCQ9 (UniProtKB/TrEMBL), A0A8C0LL90 (UniProtKB/TrEMBL), A0A8I3PY28 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSV
HKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDIS
TVV

hide sequence

RefSeq Acc Id:

XP_022264272 ⟸ XM_022408564

- UniProtKB:

A0A8C0PCQ9 (UniProtKB/TrEMBL), A0A8C0LL90 (UniProtKB/TrEMBL), A0A8I3PY28 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPRDLPP
ETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDLSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEHAGRPFLNAANDA
DLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDISTVV

hide sequence

Ensembl Acc Id:

ENSCAFP00000008470 ⟸ ENSCAFT00000009132

Protein Domains

LRRNT

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005671	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030021731	UniProtKB/TrEMBL
	ENSCAFG00040021560	UniProtKB/TrEMBL
	ENSCAFG00845026277	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000009132.4	UniProtKB/TrEMBL
	ENSCAFT00030039837.1	UniProtKB/TrEMBL
	ENSCAFT00040040025.1	UniProtKB/TrEMBL
	ENSCAFT00845046337	ENTREZGENE
	ENSCAFT00845046337.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
KEGG Report	cfa:485639	UniProtKB/TrEMBL
NCBI Gene	LRRC3B	ENTREZGENE
PANTHER	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	UniProtKB/TrEMBL
	LEUCINE RICH REPEAT CONTAINING 53	UniProtKB/TrEMBL
Pfam	LRR_1	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A8C0LL90	ENTREZGENE
	A0A8C0PCQ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PY28	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:52891	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - CTD