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Gene: Slc44a2 (solute carrier family 44 member 2) Rattus norvegicus

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Symbol:

Slc44a2

Name:

solute carrier family 44 member 2

RGD ID:

1309680

Description:

Predicted to enable choline transmembrane transporter activity and ethanolamine transmembrane transporter activity. Predicted to be involved in several processes, including choline transport; ethanolamine transport; and positive regulation of canonical NF-kappaB signal transduction. Predicted to be located in mitochondrial outer membrane and plasma membrane. Predicted to be active in membrane. Orthologous to human SLC44A2 (solute carrier family 44 member 2 (CTL2 blood group)); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

choline transporter-like protein 2; LOC363024; MGC187957; RGD1309680; similar to RIKEN cDNA 1110028E10; solute carrier family 44 (choline transporter), member 2; solute carrier family 44, member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI		GRCr8
mRatBN7.2	8	19,870,867 - 19,905,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,908,136 - 23,925,261 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,205,976 - 22,223,103 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,117,890 - 20,135,016 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,351,277 - 22,385,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,415,930 - 20,450,341 (+)	NCBI
Celera	8	21,279,682 - 21,296,806 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc44a2	Rat	familial hypercholesterolemia		ISO	RGD:1601745	8554872	ClinVar Annotator: match by term: Familial hypercholesterolemia	ClinVar	PMID:20809525\|PMID:21382890\|PMID:28492532\|PMID:28645073
Slc44a2	Rat	immunodeficiency 35		ISO	RGD:1601745	8554872	ClinVar Annotator: match by term: Immunodeficiency 35	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc44a2	Rat	Experimental Liver Cirrhosis		ISO	RGD:1601745	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:25380136

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc44a2	Rat	1,2-dimethylhydrazine	increases expression	ISO	RGD:1615873	6480464	1,2-Dimethylhydrazine results in increased expression of SLC44A2 mRNA	CTD	PMID:22206623
Slc44a2	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	RGD:1615873	6480464	Folic Acid inhibits the reaction [1,2-Dimethylhydrazine results in decreased expression of SLC44A2 mRNA]	CTD	PMID:22206623
Slc44a2	Rat	17beta-estradiol	multiple interactions	ISO	RGD:1601745	6480464	[Estradiol co-treated with Progesterone] results in increased expression of SLC44A2 mRNA	CTD	PMID:20660070
Slc44a2	Rat	2,3',4,4',5-Pentachlorobiphenyl	increases expression	ISO	RGD:1615873	6480464	2,3',4,4',5-pentachlorobiphenyl results in increased expression of SLC44A2 mRNA	CTD	PMID:31388691
Slc44a2	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	RGD:1615873	6480464	Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to SLC44A2 promoter]	CTD	PMID:19654925
Slc44a2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of SLC44A2 mRNA	CTD	PMID:33387578
Slc44a2	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of SLC44A2 mRNA	CTD	PMID:34747641
Slc44a2	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1615873	6480464	Tetrachlorodibenzodioxin affects the expression of SLC44A2 mRNA	CTD	PMID:21570461
Slc44a2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:1615873	6480464	Tetrachlorodibenzodioxin results in decreased expression of SLC44A2 mRNA	CTD	PMID:19465110\|PMID:19770486
Slc44a2	Rat	2,4,6-tribromophenol	increases expression	ISO	RGD:1601745	6480464	2,4,6-tribromophenol results in increased expression of SLC44A2 mRNA	CTD	PMID:31675489
Slc44a2	Rat	2,6-dimethoxyphenol	multiple interactions	ISO	RGD:1601745	6480464	[Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in increased expression of and affects the more ...	CTD	PMID:38598786
Slc44a2	Rat	2-bromohexadecanoic acid	multiple interactions	ISO	RGD:1601745	6480464	2-bromopalmitate inhibits the reaction [[Cadmium Chloride results in increased abundance of Cadmium] which results in more ...	CTD	PMID:38195004
Slc44a2	Rat	2-hydroxypropanoic acid	decreases expression	ISO	RGD:1601745	6480464	Lactic Acid results in decreased expression of SLC44A2 mRNA	CTD	PMID:30851411
Slc44a2	Rat	3,3',5,5'-tetrabromobisphenol A	increases expression	ISO	RGD:1601745	6480464	tetrabromobisphenol A results in increased expression of SLC44A2 protein	CTD	PMID:31675489
Slc44a2	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	RGD:1601745	6480464	bisphenol S results in increased expression of SLC44A2 mRNA	CTD	PMID:25912373
Slc44a2	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of more ...	CTD	PMID:36041667
Slc44a2	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1615873	6480464	bisphenol S affects the methylation of SLC44A2 gene	CTD	PMID:31683443
Slc44a2	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	RGD:1615873	6480464	bisphenol S results in decreased methylation of SLC44A2 exon	CTD	PMID:33297965
Slc44a2	Rat	4-hydroxyphenyl retinamide	decreases expression	ISO	RGD:1615873	6480464	Fenretinide results in decreased expression of SLC44A2 mRNA	CTD	PMID:28973697
Slc44a2	Rat	4-phenylbutyric acid	increases expression	ISO	RGD:1601745	6480464	4-phenylbutyric acid results in increased expression of CTL2 mRNA	CTD	PMID:14583596
Slc44a2	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of SLC44A2 mRNA	CTD	PMID:24780913
Slc44a2	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of SLC44A2 mRNA	CTD	PMID:31881176
Slc44a2	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of SLC44A2 mRNA	CTD	PMID:28959563
Slc44a2	Rat	allethrin	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Slc44a2	Rat	aristolochic acid A	increases expression	ISO	RGD:1601745	6480464	aristolochic acid I results in increased expression of SLC44A2 mRNA	CTD	PMID:33212167
Slc44a2	Rat	arsane	affects expression	ISO	RGD:1601745	6480464	Arsenic affects the expression of SLC44A2 mRNA	CTD	PMID:18414638
Slc44a2	Rat	arsane	affects methylation	ISO	RGD:1601745	6480464	Arsenic affects the methylation of SLC44A2 gene	CTD	PMID:25304211
Slc44a2	Rat	arsenic atom	affects expression	ISO	RGD:1601745	6480464	Arsenic affects the expression of SLC44A2 mRNA	CTD	PMID:18414638
Slc44a2	Rat	arsenic atom	affects methylation	ISO	RGD:1601745	6480464	Arsenic affects the methylation of SLC44A2 gene	CTD	PMID:25304211
Slc44a2	Rat	benzene-1,2,4-triol	decreases expression	ISO	RGD:1601745	6480464	hydroxyhydroquinone results in decreased expression of SLC44A2 mRNA	CTD	PMID:39245080
Slc44a2	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1615873	6480464	Benzo(a)pyrene results in decreased expression of SLC44A2 mRNA	CTD	PMID:19770486
Slc44a2	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1601745	6480464	Benzo(a)pyrene affects the methylation of SLC44A2 promoter	CTD	PMID:27901495
Slc44a2	Rat	beta-lapachone	increases expression	ISO	RGD:1601745	6480464	beta-lapachone results in increased expression of SLC44A2 mRNA	CTD	PMID:38218311
Slc44a2	Rat	bis(2-chloroethyl) sulfide	increases expression	ISO	RGD:1601745	6480464	Mustard Gas results in increased expression of SLC44A2 mRNA	CTD	PMID:25102026
Slc44a2	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of SLC44A2 mRNA	CTD	PMID:25181051
Slc44a2	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of more ...	CTD	PMID:36041667
Slc44a2	Rat	bisphenol A	decreases expression	ISO	RGD:1601745	6480464	bisphenol A results in decreased expression of SLC44A2 protein	CTD	PMID:31675489
Slc44a2	Rat	bisphenol A	increases expression	ISO	RGD:1601745	6480464	bisphenol A results in increased expression of SLC44A2 mRNA	CTD	PMID:29275510
Slc44a2	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of SLC44A2 gene	CTD	PMID:28505145
Slc44a2	Rat	bisphenol AF	increases expression	ISO	RGD:1601745	6480464	bisphenol AF results in increased expression of SLC44A2 mRNA	CTD	PMID:25912373
Slc44a2	Rat	bisphenol F	decreases expression	ISO	RGD:1615873	6480464	bisphenol F results in decreased expression of SLC44A2 mRNA	CTD	PMID:38685157
Slc44a2	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of more ...	CTD	PMID:36041667
Slc44a2	Rat	C60 fullerene	increases expression	EXP		6480464	fullerene C60 results in increased expression of SLC44A2 mRNA	CTD	PMID:19167457
Slc44a2	Rat	cadmium atom	multiple interactions	ISO	RGD:1601745	6480464	2-bromopalmitate inhibits the reaction [[Cadmium Chloride results in increased abundance of Cadmium] which results in more ...	CTD	PMID:38195004
Slc44a2	Rat	cadmium dichloride	multiple interactions	ISO	RGD:1601745	6480464	2-bromopalmitate inhibits the reaction [[Cadmium Chloride results in increased abundance of Cadmium] which results in more ...	CTD	PMID:38195004
Slc44a2	Rat	cantharidin	decreases expression	ISO	RGD:1615873	6480464	Cantharidin results in decreased expression of SLC44A2 mRNA	CTD	PMID:36907384
Slc44a2	Rat	cisplatin	multiple interactions	ISO	RGD:1601745	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of SLC44A2 mRNA	CTD	PMID:27392435
Slc44a2	Rat	copper atom	multiple interactions	ISO	RGD:1601745	6480464	[Disulfiram binds to Copper] which results in increased expression of SLC44A2 mRNA	CTD	PMID:24690739
Slc44a2	Rat	copper(0)	multiple interactions	ISO	RGD:1601745	6480464	[Disulfiram binds to Copper] which results in increased expression of SLC44A2 mRNA	CTD	PMID:24690739
Slc44a2	Rat	copper(II) chloride	decreases expression	ISO	RGD:1601745	6480464	cupric chloride results in decreased expression of SLC44A2 mRNA	CTD	PMID:38568856
Slc44a2	Rat	copper(II) sulfate	increases expression	ISO	RGD:1601745	6480464	Copper Sulfate results in increased expression of SLC44A2 mRNA	CTD	PMID:20599845
Slc44a2	Rat	copper(II) sulfate	decreases expression	ISO	RGD:1601745	6480464	Copper Sulfate results in decreased expression of SLC44A2 mRNA	CTD	PMID:20599845
Slc44a2	Rat	cyclosporin A	decreases expression	ISO	RGD:1601745	6480464	Cyclosporine results in decreased expression of SLC44A2 mRNA	CTD	PMID:24907557
Slc44a2	Rat	cyclosporin A	increases expression	ISO	RGD:1601745	6480464	Cyclosporine results in increased expression of SLC44A2 mRNA	CTD	PMID:25562108
Slc44a2	Rat	cyhalothrin	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Slc44a2	Rat	cypermethrin	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Slc44a2	Rat	decabromodiphenyl ether	increases expression	ISO	RGD:1601745	6480464	decabromobiphenyl ether results in increased expression of SLC44A2 protein	CTD	PMID:31675489
Slc44a2	Rat	disulfiram	multiple interactions	ISO	RGD:1601745	6480464	[Disulfiram binds to Copper] which results in increased expression of SLC44A2 mRNA	CTD	PMID:24690739
Slc44a2	Rat	doxorubicin	affects expression	ISO	RGD:1601745	6480464	Doxorubicin affects the expression of SLC44A2 mRNA	CTD	PMID:29803840
Slc44a2	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of SLC44A2 mRNA	CTD	PMID:29391264
Slc44a2	Rat	ethanol	increases expression	ISO	RGD:1601745	6480464	Ethanol results in increased expression of SLC44A2 mRNA	CTD	PMID:28986285
Slc44a2	Rat	ethanol	affects splicing	ISO	RGD:1615873	6480464	Ethanol affects the splicing of SLC44A2 mRNA	CTD	PMID:30319688
Slc44a2	Rat	ethanol	increases expression	ISO	RGD:1615873	6480464	Ethanol results in increased expression of SLC44A2 mRNA	CTD	PMID:30319688
Slc44a2	Rat	fenvalerate	multiple interactions	EXP		6480464	[cypermethrin co-treated with decamethrin co-treated with fenvalerate co-treated with cyhalothrin co-treated with Allethrins] results in more ...	CTD	PMID:34896426
Slc44a2	Rat	folic acid	multiple interactions	ISO	RGD:1615873	6480464	Folic Acid inhibits the reaction [1,2-Dimethylhydrazine results in decreased expression of SLC44A2 mRNA]	CTD	PMID:22206623
Slc44a2	Rat	fonofos	increases methylation	ISO	RGD:1601745	6480464	Fonofos results in increased methylation of SLC44A2 promoter	CTD	PMID:22847954
Slc44a2	Rat	furfural	multiple interactions	ISO	RGD:1601745	6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of more ...	CTD	PMID:38598786
Slc44a2	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of SLC44A2 mRNA	CTD	PMID:22061828
Slc44a2	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of SLC44A2 mRNA	CTD	PMID:33387578
Slc44a2	Rat	hydrogen cyanide	decreases expression	ISO	RGD:1615873	6480464	Hydrogen Cyanide results in decreased expression of SLC44A2 mRNA	CTD	PMID:33914522
Slc44a2	Rat	leflunomide	increases expression	ISO	RGD:1601745	6480464	leflunomide results in increased expression of SLC44A2 mRNA	CTD	PMID:28988120
Slc44a2	Rat	lipopolysaccharide	multiple interactions	ISO	RGD:1601745	6480464	[S-(1,2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in decreased expression of SLC44A2 mRNA	CTD	PMID:35811015
Slc44a2	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of SLC44A2 gene	CTD	PMID:35440735
Slc44a2	Rat	N-Nitrosopyrrolidine	increases expression	ISO	RGD:1601745	6480464	N-Nitrosopyrrolidine results in increased expression of SLC44A2 mRNA	CTD	PMID:32234424
Slc44a2	Rat	O-methyleugenol	increases expression	ISO	RGD:1601745	6480464	methyleugenol results in increased expression of SLC44A2 mRNA	CTD	PMID:32234424
Slc44a2	Rat	ozone	multiple interactions	ISO	RGD:1615873	6480464	[Air Pollutants results in increased abundance of Ozone] which results in increased expression of SLC44A2 more ...	CTD	PMID:34911549
Slc44a2	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of SLC44A2 mRNA	CTD	PMID:33387578
Slc44a2	Rat	parathion	increases methylation	ISO	RGD:1601745	6480464	Parathion results in increased methylation of SLC44A2 promoter	CTD	PMID:22847954
Slc44a2	Rat	potassium cyanide	decreases expression	ISO	RGD:1615873	6480464	Potassium Cyanide results in decreased expression of SLC44A2 mRNA	CTD	PMID:33914522
Slc44a2	Rat	progesterone	multiple interactions	ISO	RGD:1601745	6480464	[Estradiol co-treated with Progesterone] results in increased expression of SLC44A2 mRNA	CTD	PMID:20660070
Slc44a2	Rat	pyrethrins	decreases expression	EXP		6480464	Pyrethrins results in decreased expression of SLC44A2 protein	CTD	PMID:34896426
Slc44a2	Rat	rac-lactic acid	decreases expression	ISO	RGD:1601745	6480464	Lactic Acid results in decreased expression of SLC44A2 mRNA	CTD	PMID:30851411
Slc44a2	Rat	resorcinol	decreases expression	ISO	RGD:1601745	6480464	resorcinol results in decreased expression of SLC44A2 mRNA	CTD	PMID:22623647
Slc44a2	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	RGD:1601745	6480464	[S-(1,2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in decreased expression of SLC44A2 mRNA	CTD	PMID:35811015
Slc44a2	Rat	SB 431542	multiple interactions	ISO	RGD:1601745	6480464	[LDN 193189 co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in increased expression of SLC44A2 more ...	CTD	PMID:37664457
Slc44a2	Rat	silicon dioxide	decreases expression	ISO	RGD:1601745	6480464	Silicon Dioxide analog results in decreased expression of SLC44A2 mRNA	CTD	PMID:25895662
Slc44a2	Rat	sodium arsenite	decreases expression	ISO	RGD:1601745	6480464	sodium arsenite results in decreased expression of SLC44A2 mRNA	CTD	PMID:38568856
Slc44a2	Rat	sodium chloride	multiple interactions	ISO	RGD:1601745	6480464	[Sodium Chloride co-treated with Furaldehyde] results in decreased expression of and affects the localization of more ...	CTD	PMID:38598786
Slc44a2	Rat	Soman	increases expression	EXP		6480464	Soman results in increased expression of SLC44A2 mRNA	CTD	PMID:19281266
Slc44a2	Rat	tamoxifen	affects expression	ISO	RGD:1615873	6480464	Tamoxifen affects the expression of SLC44A2 mRNA	CTD	PMID:20937368
Slc44a2	Rat	terbufos	increases methylation	ISO	RGD:1601745	6480464	terbufos results in increased methylation of SLC44A2 promoter	CTD	PMID:22847954
Slc44a2	Rat	tetrachloromethane	affects expression	ISO	RGD:1615873	6480464	Carbon Tetrachloride affects the expression of SLC44A2 mRNA	CTD	PMID:17484886
Slc44a2	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of SLC44A2 mRNA	CTD	PMID:34492290
Slc44a2	Rat	triphenyl phosphate	affects expression	ISO	RGD:1601745	6480464	triphenyl phosphate affects the expression of SLC44A2 mRNA	CTD	PMID:37042841
Slc44a2	Rat	triptonide	affects expression	ISO	RGD:1615873	6480464	triptonide affects the expression of SLC44A2 mRNA	CTD	PMID:33045310
Slc44a2	Rat	urethane	increases expression	ISO	RGD:1601745	6480464	Urethane results in increased expression of SLC44A2 mRNA	CTD	PMID:28818685
Slc44a2	Rat	valproic acid	affects expression	ISO	RGD:1615873	6480464	Valproic Acid affects the expression of SLC44A2 mRNA	CTD	PMID:17292431
Slc44a2	Rat	valproic acid	increases expression	ISO	RGD:1601745	6480464	Valproic Acid results in increased expression of SLC44A2 mRNA	CTD	PMID:23179753\|PMID:28001369\|PMID:29154799
Slc44a2	Rat	valproic acid	increases expression	ISO	RGD:1615873	6480464	Valproic Acid results in increased expression of SLC44A2 mRNA	CTD	PMID:21427059
Slc44a2	Rat	vancomycin	decreases expression	ISO	RGD:1615873	6480464	Vancomycin results in decreased expression of SLC44A2 mRNA	CTD	PMID:18930951
Slc44a2	Rat	vinclozolin	affects expression	EXP		6480464	vinclozolin affects the expression of SLC44A2 mRNA	CTD	PMID:19015723
Slc44a2	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of SLC44A2 mRNA	CTD	PMID:23034163
Slc44a2	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of SLC44A2 mRNA	CTD	PMID:23034163
Slc44a2	Rat	zoledronic acid	decreases expression	ISO	RGD:1601745	6480464	zoledronic acid results in decreased expression of SLC44A2 mRNA	CTD	PMID:24714768

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc44a2	Rat	choline transport	involved_in	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Slc44a2	Rat	choline transport	involved_in	ISS	UniProtKB:Q8IWA5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Slc44a2	Rat	choline transport	NOT\|involved_in	ISO	RGD:1601745,UniProtKB:Q8IWA5-3	1624291	PMID:10677542, PMID:20665236	RGD	PMID:10677542\|PMID:20665236
Slc44a2	Rat	choline transport	involved_in	ISO	RGD:1601745	1624291	PMID:20410607, PMID:23651124, PMID:33789160	RGD	PMID:20410607\|PMID:23651124\|PMID:33789160
Slc44a2	Rat	ethanolamine transport	involved_in	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Slc44a2	Rat	ethanolamine transport	involved_in	ISO	RGD:1601745	1624291	PMID:33789160	RGD	PMID:33789160
Slc44a2	Rat	ethanolamine transport	involved_in	ISS	UniProtKB:Q8IWA5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Slc44a2	Rat	organic cation transport	involved_in	IEA	GO:0015101	1600115	GO_REF:0000108	GOC	GO_REF:0000108
Slc44a2	Rat	positive regulation of canonical NF-kappaB signal transduction	involved_in	ISO	RGD:1601745	9068941	PMID:12761501	UniProt	PMID:12761501
Slc44a2	Rat	transmembrane transport	involved_in	IEA	InterPro:IPR007603	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Slc44a2	Rat	transmembrane transport	involved_in	IBA	MGI:1917379\|MGI:2140592\|PANTHER:PTN000272883\|RGD:621426\|UniProtKB:Q53GD3\|UniProtKB:Q8IWA5\|UniProtKB:Q8WWI5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Slc44a2	Rat	transmembrane transport	involved_in	ISO	RGD:1601745	1624291	PMID:20410607	RGD	PMID:20410607
Slc44a2	Rat	transmembrane transport	involved_in	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc44a2	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Slc44a2	Rat	membrane	is_active_in	IBA	MGI:2140592\|PANTHER:PTN000272883\|TAIR:locus:2090171\|UniProtKB:Q53GD3\|UniProtKB:Q8IWA5\|UniProtKB:Q8NCS7\|UniProtKB:Q8WWI5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Slc44a2	Rat	mitochondrial outer membrane	located_in	IEA	UniProtKB-KW:KW-1000	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Slc44a2	Rat	mitochondrial outer membrane	located_in	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Slc44a2	Rat	mitochondrial outer membrane	located_in	ISS	UniProtKB:Q8IWA5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Slc44a2	Rat	mitochondrial outer membrane	located_in	ISO	RGD:1601745	1624291	PMID:33789160	RGD	PMID:33789160
Slc44a2	Rat	mitochondrial outer membrane	located_in	IEA	UniProtKB-SubCell:SL-0172	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Slc44a2	Rat	mitochondrion	located_in	ISO	RGD:1601745	1624291	PMID:26746385	RGD	PMID:26746385
Slc44a2	Rat	mitochondrion	located_in	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Slc44a2	Rat	mitochondrion	located_in	IEA	UniProtKB-KW:KW-0496	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Slc44a2	Rat	plasma membrane	located_in	IEA	UniProtKB-KW:KW-1003	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Slc44a2	Rat	plasma membrane	located_in	IEA	UniRule:UR001529779	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Slc44a2	Rat	plasma membrane	located_in	ISO	RGD:1601745	1624291	PMID:26746385, PMID:33789160	RGD	PMID:26746385\|PMID:33789160
Slc44a2	Rat	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Slc44a2	Rat	plasma membrane	located_in	ISS	UniProtKB:Q8IWA5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Slc44a2	Rat	plasma membrane	located_in	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Slc44a2	Rat	antiporter activity	enables	IEA	UniProtKB-KW:KW-0050	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Slc44a2	Rat	choline transmembrane transporter activity	enables	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Slc44a2	Rat	choline transmembrane transporter activity	enables	ISS	UniProtKB:Q8IWA5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Slc44a2	Rat	choline transmembrane transporter activity	NOT\|enables	ISO	RGD:1601745,UniProtKB:Q8IWA5-3	1624291	PMID:10677542, PMID:20665236	RGD	PMID:10677542\|PMID:20665236
Slc44a2	Rat	choline transmembrane transporter activity	enables	ISO	RGD:1601745	1624291	PMID:20410607, PMID:23651124, PMID:33789160	RGD	PMID:20410607\|PMID:23651124\|PMID:33789160
Slc44a2	Rat	ethanolamine transmembrane transporter activity	enables	IEA	UniProtKB:Q8IWA5\|ensembl:ENSP00000336888	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Slc44a2	Rat	ethanolamine transmembrane transporter activity	enables	ISS	UniProtKB:Q8IWA5	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Slc44a2	Rat	ethanolamine transmembrane transporter activity	enables	ISO	RGD:1601745	1624291	PMID:33789160	RGD	PMID:33789160
Slc44a2	Rat	organic cation transmembrane transporter activity	enables	IEA	ARBA:ARBA00028683	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Slc44a2	Rat	protein binding	enables	ISO	RGD:1615873	1624291	PR:E9Q9D5 PMID:23055941	RGD	PMID:23055941
Slc44a2	Rat	transmembrane transporter activity	enables	IEA	InterPro:IPR007603	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Slc44a2	Rat	transmembrane transporter activity	enables	IBA	MGI:1917379\|MGI:2140592\|PANTHER:PTN000272883\|RGD:621426\|TAIR:locus:2090171\|UniProtKB:Q53GD3\|UniProtKB:Q8IWA5\|UniProtKB:Q8NCS7\|UniProtKB:Q8WWI5	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Slc44a2	Rat	transmembrane transporter activity	enables	IEA	UniRule:UR001529779	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:12761501	PMID:17897319	PMID:19056867	PMID:20410607	PMID:20458337	PMID:23376485	PMID:23533145	PMID:26746385	PMID:31505169

Slc44a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI		GRCr8
mRatBN7.2	8	19,870,867 - 19,905,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,908,136 - 23,925,261 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,205,976 - 22,223,103 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,117,890 - 20,135,016 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,351,277 - 22,385,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,415,930 - 20,450,341 (+)	NCBI
Celera	8	21,279,682 - 21,296,806 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

SLC44A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	10,602,455 - 10,644,557 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	10,602,457 - 10,644,557 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	10,713,131 - 10,755,233 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	10,597,229 - 10,616,232 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	10,607,867 - 10,649,985 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	10,290,915 - 10,332,787 (+)	NCBI		HuRef
CHM1_1	19	10,714,363 - 10,756,490 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,728,929 - 10,771,033 (+)	NCBI		T2T-CHM13v2.0

Slc44a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	21,232,015 - 21,266,324 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	21,231,994 - 21,266,324 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	21,320,719 - 21,355,028 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	21,320,698 - 21,355,028 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	21,142,296 - 21,159,472 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,088,254 - 21,105,430 (+)	NCBI		MGSCv36	mm8
Celera	9	18,606,541 - 18,623,717 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.77	NCBI

Slc44a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,791,508 - 1,807,216 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	1,780,766 - 1,804,944 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC44A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,520,898 - 15,563,477 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,519,485 - 14,562,069 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	10,154,320 - 10,196,898 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,815,825 - 10,857,693 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,815,820 - 10,857,693 (+)	Ensembl	panpan1.1		panPan2

SLC44A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	50,557,816 - 50,571,137 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	50,551,249 - 50,607,200 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,430,322 - 50,459,391 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,076,057 - 51,093,668 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,082,994 - 51,130,343 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,292,534 - 50,316,940 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	50,715,881 - 50,744,966 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	50,957,171 - 50,986,231 (-)	NCBI		UU_Cfam_GSD_1.0

Slc44a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,459,250 - 209,491,121 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	882,221 - 895,444 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	863,612 - 895,456 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC44A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	69,365,012 - 69,399,081 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	69,364,946 - 69,399,081 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	69,742,605 - 69,783,395 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC44A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,607,224 - 9,646,535 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	9,630,113 - 9,646,389 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	10,326,343 - 10,349,797 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc44a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,655,113 - 2,677,135 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	2,655,107 - 2,678,347 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Slc44a2
202 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	526
Count of miRNA genes:	243
Interacting mature miRNAs:	277
Transcripts:	ENSRNOT00000049973
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24597739	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat

35.MMHAP10FD5.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,902,641 - 19,902,812 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,383,166 - 22,383,336	NCBI	Rnor6.0
Rnor_5.0	8	22,437,283 - 22,437,453	UniSTS	Rnor5.0
RGSC_v3.4	8	20,448,877 - 20,449,047	UniSTS	RGSC3.4
Celera	8	21,294,103 - 21,294,273	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH129061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	28,181,164 - 28,181,405 (+)	Marker Load Pipeline
mRatBN7.2	8	19,905,013 - 19,905,254 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,385,538 - 22,385,778	NCBI	Rnor6.0
Rnor_5.0	8	22,439,655 - 22,439,895	UniSTS	Rnor5.0
RGSC_v3.4	8	20,451,249 - 20,451,489	UniSTS	RGSC3.4
Celera	8	21,296,475 - 21,296,715	UniSTS
Cytogenetic Map	8	q13	UniSTS

BF410447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,894,416 - 19,894,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,374,939 - 22,375,044	NCBI	Rnor6.0
Rnor_5.0	8	22,429,056 - 22,429,161	UniSTS	Rnor5.0
RGSC_v3.4	8	20,440,449 - 20,440,554	UniSTS	RGSC3.4
Celera	8	21,285,876 - 21,285,981	UniSTS
RH 3.4 Map	8	180.8	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH135148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,888,674 - 19,888,876 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,369,198 - 22,369,399	NCBI	Rnor6.0
Rnor_5.0	8	22,423,315 - 22,423,516	UniSTS	Rnor5.0
RGSC_v3.4	8	20,434,367 - 20,434,568	UniSTS	RGSC3.4
Celera	8	21,280,135 - 21,280,336	UniSTS
RH 3.4 Map	8	181.9	UniSTS
Cytogenetic Map	8	q13	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001134715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000049973 ⟹ ENSRNOP00000051322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,888,174 - 19,905,336 (+)	Ensembl
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109509 ⟹ ENSRNOP00000083031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115377 ⟹ ENSRNOP00000083534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,870,915 - 19,905,336 (+)	Ensembl

RefSeq Acc Id:

NM_001134715 ⟹ NP_001128187

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,164,372 - 28,181,496 (+)	NCBI
mRatBN7.2	8	19,888,222 - 19,905,345 (+)	NCBI
Rnor_6.0	8	22,368,745 - 22,385,869 (+)	NCBI
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	RGD
Celera	8	21,279,682 - 21,296,806 (+)	RGD

Sequence:

show sequence

GCTGCAGCGGGTGGCGGCTGTGTCCCGGAGAGCTCCGACAGCCCGGGCGCCGTCAGGGCTGCACCGCAGGAATGGGGAAGGATTCGCAGCATTACTACGGGAAGCACGGGACGCCTCAGAAATATGAC
CCCACCTTTAAAGGACCCATTTACAACAGGGGATGCACGGATATCATTTGCTGTGTGTTGCTCTTCCTGGCCATCGTAGGCTACGTGGCTGTGGGCATCATAGCCTGGACCCATGGAGACCCTCGGAA
GGTGATCTACCCCACTGATAGCCGGGGCGAGTTCTGTGGGCAAAAGGGAACAAAAAATGCGGACAAACCATTCTTGTTTTACTTCAACATCGTGAAGTGTGCCAGCCCCCTGGTCCTGCTGGAATTTC
ACTGTCCCACCCCTCAGATCTGCGTGAAGCAGTGTCCAGACCGCTATCTCACCTTTCTGAGTGCGCGCAACTCTCGCGACTTTGACTACTACAAGCAGTTCTGTGTGCCCGGCTTCAAGAACAATAAA
GGGGTAGCTGAGGTGCTCAGAGATGGGGAGTGCCCAGCGGTTATCATCCCCAGCAAACCCTTGGCCCAGCGGTGCTTCCCGGCCATCCATGCCAGCAAAGGGGTCCTCATGGTGGGCAATGAGACGAC
CTATGAGGACGGACACGGCACCAGGAAGAATGTTACAGATCTAGTGGAGGGTGCCAAAAAGGCCAACAAGGTTCTAGAGGCCCGGCAGCTCGCCATGCAGATTTTTGAAGATTACACTGTATCCTGGT
ACTGGATTGTCATAGGTCTGGTCATCGCCATGCTGCTGAGCCTCATGTTCATTGTCCTGCTGCGATTCCTGGCAGGCGTCATGGTCTGGGTGATGATCGTCATGGTGATTCTGGTACTTGGCTATGGC
ATATTCCACTGCTACGCGGAGTACTCGAGACTCCGTGGAGAGGCAGGCTCCGACGTCTCCCTGGTGGACCTTGGCTTCCAGACGGACCTCCGAGTGTACCTGCACTTGAGGCAGACTTGGATGGCTTT
CATGATCATTTTAAGCATCCTGGAAGTGGTCATCATCCTGTTACTCATCTTTCTGCGCAAAAGGATCTTGATCGCCATAGCCCTCATCAAAGAAGCCAGCAGGGCTGTGGGACATGTCATGTGCTCCA
TGCTCTACCCACTGGTGACTTTCTTCCTCTTGTGTCTCTGCATTGCCTACTGGGCCAGCACTTCTGTCTTCCTGTCTACCTCTAATGTAGCCGTGTACAAGATTGTTGATGACACGCCCTGCCCACTT
TTGGGGAAAACCTGCAACCCAGAGACCTTCCCATTGAATGAGAGCCGCCAGTGTCCTAATGGCCGCTGTCAGTTTGCCTTCTATGGCGGCGAGTCGACCTACCACCGTGCCCTGCTGGGCCTGCAGAT
CTTCAATGCATTCATGTTCTTCTGGCTAGCCAACTTCGTGCTAGCCCTGGGCCAGGTGACACTGGCTGGAGCCTTTGCCTCCTATTACTGGGCTATGCGAAAGCCCGATGACATGCCTGCCTTCCCCC
TCTTCTCTGCTTTTGGCCGCGCACTCAGGTACCACACGGGCTCCTTGGCTTTTGGCTCTCTTATCCTAGCCATCGTGCAGATCATCCGAGTGATGCTGGAGTACCTGGATCAGCGCCTGAAAGCTGCA
CAGAACAAGTTTGCCAAGTTCCTCATGGTCTGTCTCAAGTGCTGCTTCTGGTGCCTAGAGAAGTTTATCAAATTCCTGAATAGGAATGCCTACATCATGATTGCTATCTATGGCACCAACTTCTGCAC
CTCAGCCAGGAACGCCTTCTTCCTGCTTATGAGAAATATCATCAGGGTGGCCGTCCTGGACAAAGTTACAGACTTCCTCTTCCTGTTGGGCAAACTTCTGATTGTGGGTAGCGTGGGCATCCTGGCCT
TCTTCTTCTTCACCCATCGGATCAGAATTGTGCAAGACACGGCCCCACCTCTCAATTATTATTGGGTCCCCATACTGACAGTGATCATTGGCTCCTACTTGATCGCGCACGGCTTCTTCAGCGTCTAT
GGCATGTGCGTGGACACACTGTTCCTCTGTTTCTTGGAGGATCTGGAGAGAAACGACGGCTCAGCCGAGAGGCCTTACTTCATGTCTTCCACTCTCAAGAAACTCCTGAATAAAACCAACAAGAAAGT
AGCAGAATCCTAAAGATGCCTGCCGCCCAGCCCTCTCAGGACGCTGTGATCCGGTGCTTGCTGTGCAGCTGGGTCCCAGTTCCCAGCTCATCAGACTTGTGTAACGTCACATCACTGCCTCTCTGCCA
CCCTCCCCGAGTCCCCATTTCCAGGGACCCAGAGGAATTGGGGCATCTCTGTCCTATGCCAAAGGGCACTTGGGAGTTTTCGGTGCAGCCCTGGGAAATGGGACAGAATGGGTCTCTCCAATCCTTGC
TGGCTCAGACGGTGCCAATATGGCGAAGCGACTTGAAGTTGAGGATGGGAGATGGCCCGAGGATGTGTGCAGCCAACTTCTTTGTATTTCGGTAACCCTTCTGGCCAAGAGGGGAAGACTGGATGAGA
CGAGCTCAATGAACACTAGCTCCAAGCTTCCTAGCCAGAATAAAACTGGATCTCCACGACTGGCTGATGTCGCCTAAGGGCCAACAAATAACATGTCTCACTCTTAGTCCTTTGCAGCCTAGACAGAC
GGTAAGAGGCCCACCTGCTTCTCTTCCACCAGGCTCCATAGCTGAGTGGAGTCACCAAGAGTGCCTTCACATGTAACCCCACCTCCAGCCTGGGGTGGCTGGGGTCACAGGAAGGAGTGTGTACCCAG
AACTGGAGGAGTTTTCCAGATAAACATCCATCCGGGAGGAGGGCCCTGTGCAAGGAACGAGAGCGGTGGTGGGGGTTGGGAGTGGCTCTGGAAAACAGGCTTCTGTACTTAGATCCTACAGAGTACCT
TTGACTGATGGCTTCCAAACGGAAAACTTGAGGTTGGAAAATGAGTGAAAATAGGGTCTGCCTCCCCACCCCTCTCTCTTCCAGTAATACACACTGCCCTCTTTGTGAGAGGAAAGAAACTGAAGTTC
ACCCAAGGGATGGTTTCAGGGGATGAGGTGTGGGTGTGTTGTGTATTCCAAGTTAACTAGGCCTATCTGGTTTCTTTCACTTGAAACTAGAGACTCTGTTTGCCAAACTTCTTAATCTTGGGGGCCAG
TAGACTGGTTCCTCACTTTACCTATCATATGCTAAGACCCTCCCCTCACCCCACTATGGCTATCCGTGAGATACCAGGATGTTGGAAACCAGAGGCTCCCAGCCTGGAGGCCCAGGCTTTCCTATGCC
TGCCTGTGTGCCATCGCGCCCCACCCTTCTCTTGTATGCCCTGCCCTGTGCTTACGTAATTGCATTCCAGCCAGTTAATAAAGTGCCTCTTGTACAGATAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242651 ⟹ XP_006242713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI
mRatBN7.2	8	19,870,868 - 19,905,345 (+)	NCBI
Rnor_6.0	8	22,351,278 - 22,385,869 (+)	NCBI
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI

Sequence:

show sequence

GGGGCGGGGTCAGGCGGGGCAGGGCGGGGCCTGAGGCGCGGTGTCTCCCCGCCCGCTTGGGTTGGGGTCGCTCTGGCTTCGGACTCAGCTCCCCTCGGTTGCGGCCATGGAGGACGATCGGAAGGACG
CAGTGTATGGGACGCCTCAGAAATATGACCCCACCTTTAAAGGACCCATTTACAACAGGGGATGCACGGATATCATTTGCTGTGTGTTGCTCTTCCTGGCCATCGTAGGCTACGTGGCTGTGGGCATC
ATAGCCTGGACCCATGGAGACCCTCGGAAGGTGATCTACCCCACTGATAGCCGGGGCGAGTTCTGTGGGCAAAAGGGAACAAAAAATGCGGACAAACCATTCTTGTTTTACTTCAACATCGTGAAGTG
TGCCAGCCCCCTGGTCCTGCTGGAATTTCACTGTCCCACCCCTCAGATCTGCGTGAAGCAGTGTCCAGACCGCTATCTCACCTTTCTGAGTGCGCGCAACTCTCGCGACTTTGACTACTACAAGCAGT
TCTGTGTGCCCGGCTTCAAGAACAATAAAGGGGTAGCTGAGGTGCTCAGAGATGGGGAGTGCCCAGCGGTTATCATCCCCAGCAAACCCTTGGCCCAGCGGTGCTTCCCGGCCATCCATGCCAGCAAA
GGGGTCCTCATGGTGGGCAATGAGACGACCTATGAGGACGGACACGGCACCAGGAAGAATGTTACAGATCTAGTGGAGGGTGCCAAAAAGGCCAACAAGGTTCTAGAGGCCCGGCAGCTCGCCATGCA
GATTTTTGAAGATTACACTGTATCCTGGTACTGGATTGTCATAGGTCTGGTCATCGCCATGCTGCTGAGCCTCATGTTCATTGTCCTGCTGCGATTCCTGGCAGGCGTCATGGTCTGGGTGATGATCG
TCATGGTGATTCTGGTACTTGGCTATGGCATATTCCACTGCTACGCGGAGTACTCGAGACTCCGTGGAGAGGCAGGCTCCGACGTCTCCCTGGTGGACCTTGGCTTCCAGACGGACCTCCGAGTGTAC
CTGCACTTGAGGCAGACTTGGATGGCTTTCATGATCATTTTAAGCATCCTGGAAGTGGTCATCATCCTGTTACTCATCTTTCTGCGCAAAAGGATCTTGATCGCCATAGCCCTCATCAAAGAAGCCAG
CAGGGCTGTGGGACATGTCATGTGCTCCATGCTCTACCCACTGGTGACTTTCTTCCTCTTGTGTCTCTGCATTGCCTACTGGGCCAGCACTTCTGTCTTCCTGTCTACCTCTAATGTAGCCGTGTACA
AGATTGTTGATGACACGCCCTGCCCACTTTTGGGGAAAACCTGCAACCCAGAGACCTTCCCATTGAATGAGAGCCGCCAGTGTCCTAATGGCCGCTGTCAGTTTGCCTTCTATGGCGGCGAGTCGACC
TACCACCGTGCCCTGCTGGGCCTGCAGATCTTCAATGCATTCATGTTCTTCTGGCTAGCCAACTTCGTGCTAGCCCTGGGCCAGGTGACACTGGCTGGAGCCTTTGCCTCCTATTACTGGGCTATGCG
AAAGCCCGATGACATGCCTGCCTTCCCCCTCTTCTCTGCTTTTGGCCGCGCACTCAGGTACCACACGGGCTCCTTGGCTTTTGGCTCTCTTATCCTAGCCATCGTGCAGATCATCCGAGTGATGCTGG
AGTACCTGGATCAGCGCCTGAAAGCTGCACAGAACAAGTTTGCCAAGTTCCTCATGGTCTGTCTCAAGTGCTGCTTCTGGTGCCTAGAGAAGTTTATCAAATTCCTGAATAGGAATGCCTACATCATG
ATTGCTATCTATGGCACCAACTTCTGCACCTCAGCCAGGAACGCCTTCTTCCTGCTTATGAGAAATATCATCAGGGTGGCCGTCCTGGACAAAGTTACAGACTTCCTCTTCCTGTTGGGCAAACTTCT
GATTGTGGGTAGCGTGGGCATCCTGGCCTTCTTCTTCTTCACCCATCGGATCAGAATTGTGCAAGACACGGCCCCACCTCTCAATTATTATTGGGTCCCCATACTGACAGTGATCATTGGCTCCTACT
TGATCGCGCACGGCTTCTTCAGCGTCTATGGCATGTGCGTGGACACACTGTTCCTCTGTTTCTTGGAGGATCTGGAGAGAAACGACGGCTCAGCCGAGAGGCCTTACTTCATGTCTTCCACTCTCAAG
AAACTCCTGAATAAAACCAACAAGAAAGTAGCAGAATCCTAAAGATGCCTGCCGCCCAGCCCTCTCAGGACGCTGTGATCCGGTGCTTGCTGTGCAGCTGGGTCCCAGTTCCCAGCTCATCAGACTTG
TGTAACGTCACATCACTGCCTCTCTGCCACCCTCCCCGAGTCCCCATTTCCAGGGACCCAGAGGAATTGGGGCATCTCTGTCCTATGCCAAAGGGCACTTGGGAGTTTTCGGTGCAGCCCTGGGAAAT
GGGACAGAATGGGTCTCTCCAATCCTTGCTGGCTCAGACGGTGCCAATATGGCGAAGCGACTTGAAGTTGAGGATGGGAGATGGCCCGAGGATGTGTGCAGCCAACTTCTTTGTATTTCGGTAACCCT
TCTGGCCAAGAGGGGAAGACTGGATGAGACGAGCTCAATGAACACTAGCTCCAAGCTTCCTAGCCAGAATAAAACTGGATCTCCACGACTGGCTGATGTCGCCTAAGGGCCAACAAATAACATGTCTC
ACTCTTAGTCCTTTGCAGCCTAGACAGACGGTAAGAGGCCCACCTGCTTCTCTTCCACCAGGCTCCATAGCTGAGTGGAGTCACCAAGAGTGCCTTCACATGTAACCCCACCTCCAGCCTGGGGTGGC
TGGGGTCACAGGAAGGAGTGTGTACCCAGAACTGGAGGAGTTTTCCAGATAAACATCCATCCGGGAGGAGGGCCCTGTGCAAGGAACGAGAGCGGTGGTGGGGGTTGGGAGTGGCTCTGGAAAACAGG
CTTCTGTACTTAGATCCTACAGAGTACCTTTGACTGATGGCTTCCAAACGGAAAACTTGAGGTTGGAAAATGAGTGAAAATAGGGTCTGCCTCCCCACCCCTCTCTCTTCCAGTAATACACACTGCCC
TCTTTGTGAGAGGAAAGAAACTGAAGTTCACCCAAGGGATGGTTTCAGGGGATGAGGTGTGGGTGTGTTGTGTATTCCAAGTTAACTAGGCCTATCTGGTTTCTTTCACTTGAAACTAGAGACTCTGT
TTGCCAAACTTCTTAATCTTGGGGGCCAGTAGACTGGTTCCTCACTTTACCTATCATATGCTAAGACCCTCCCCTCACCCCACTATGGCTATCCGTGAGATACCAGGATGTTGGAAACCAGAGGCTCC
CAGCCTGGAGGCCCAGGCTTTCCTATGCCTGCCTGTGTGCCATCGCGCCCCACCCTTCTCTTGTATGCCCTGCCCTGTGCTTACGTAATTGCATTCCAGCCAGTTAATAAAGTGCCTCTTGTACAGAT
A

hide sequence

RefSeq Acc Id:

XM_039081711 ⟹ XP_038937639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,164,180 - 28,180,331 (+)	NCBI
mRatBN7.2	8	19,888,033 - 19,904,081 (+)	NCBI

RefSeq Acc Id:

XM_063265728 ⟹ XP_063121798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,164,180 - 28,181,496 (+)	NCBI

RefSeq Acc Id:

XM_063265729 ⟹ XP_063121799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI


Protein RefSeqs	NP_001128187	(Get FASTA)	NCBI Sequence Viewer
	XP_006242713	(Get FASTA)	NCBI Sequence Viewer
	XP_038937639	(Get FASTA)	NCBI Sequence Viewer
	XP_063121798	(Get FASTA)	NCBI Sequence Viewer
	XP_063121799	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68183	(Get FASTA)	NCBI Sequence Viewer
	B4F795	(Get FASTA)	NCBI Sequence Viewer
	EDL78302	(Get FASTA)	NCBI Sequence Viewer
	EDL78303	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051322
	ENSRNOP00000083031
	ENSRNOP00000083534
	ENSRNOP00000099886

RefSeq Acc Id:

NP_001128187 ⟸ NM_001134715

- UniProtKB:

B4F795 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGKDSQHYYGKHGTPQKYDPTFKGPIYNRGCTDIICCVLLFLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNADKPFLFYFNIVKCASPLVLLEFHCPTPQICVKQCPDRYLTFLSARN
SRDFDYYKQFCVPGFKNNKGVAEVLRDGECPAVIIPSKPLAQRCFPAIHASKGVLMVGNETTYEDGHGTRKNVTDLVEGAKKANKVLEARQLAMQIFEDYTVSWYWIVIGLVIAMLLSLMFIVLLRFL
AGVMVWVMIVMVILVLGYGIFHCYAEYSRLRGEAGSDVSLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIALIKEASRAVGHVMCSMLYPLVTFFLLCLCIAYWASTSVF
LSTSNVAVYKIVDDTPCPLLGKTCNPETFPLNESRQCPNGRCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILA
IVQIIRVMLEYLDQRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWVP
ILTVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKVAES

hide sequence

RefSeq Acc Id:	XP_006242713 ⟸ XM_006242651
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZYC2 (UniProtKB/TrEMBL), A6JNR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDDRKDAVYGTPQKYDPTFKGPIYNRGCTDIICCVLLFLAIVGYVAVGIIAWTHGDPRKVIYPTDSRGEFCGQKGTKNADKPFLFYFNIVKCASPLVLLEFHCPTPQICVKQCPDRYLTFLSARNSR DFDYYKQFCVPGFKNNKGVAEVLRDGECPAVIIPSKPLAQRCFPAIHASKGVLMVGNETTYEDGHGTRKNVTDLVEGAKKANKVLEARQLAMQIFEDYTVSWYWIVIGLVIAMLLSLMFIVLLRFLAG VMVWVMIVMVILVLGYGIFHCYAEYSRLRGEAGSDVSLVDLGFQTDLRVYLHLRQTWMAFMIILSILEVVIILLLIFLRKRILIAIALIKEASRAVGHVMCSMLYPLVTFFLLCLCIAYWASTSVFLS TSNVAVYKIVDDTPCPLLGKTCNPETFPLNESRQCPNGRCQFAFYGGESTYHRALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILAIV QIIRVMLEYLDQRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWVPIL TVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKVAES hide sequence

Ensembl Acc Id:

ENSRNOP00000051322 ⟸ ENSRNOT00000049973

RefSeq Acc Id:	XP_038937639 ⟸ XM_039081711
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QQY0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083534 ⟸ ENSRNOT00000115377

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B4F795-F1-model_v2	AlphaFold	B4F795	1-705	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13695779

Promoter ID:

EPDNEW_R6303

Type:

single initiation site

Name:

Slc44a2_1

Description:

solute carrier family 44 member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	22,368,734 - 22,368,794	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-31424	BioCyc
Ensembl Genes	ENSRNOG00000031824	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000049973	ENTREZGENE
	ENSRNOT00000109509	ENTREZGENE
	ENSRNOT00000115377	ENTREZGENE
	ENSRNOT00000154487	ENTREZGENE
InterPro	Choline_transptr-like	UniProtKB/Swiss-Prot
KEGG Report	rno:363024	UniProtKB/Swiss-Prot
NCBI Gene	363024	ENTREZGENE
PANTHER	CHOLINE TRANSPORTER-LIKE PROTEIN 2	UniProtKB/Swiss-Prot
	PTHR12385	UniProtKB/Swiss-Prot
Pfam	Choline_transpo	UniProtKB/Swiss-Prot
PhenoGen	Slc44a2	PhenoGen
RatGTEx	ENSRNOG00000031824	RatGTEx
UniProt	A0A8I5ZYC2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G961	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QQY0	ENTREZGENE, UniProtKB/TrEMBL
	A6JNR3	ENTREZGENE, UniProtKB/TrEMBL
	B4F795	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc44a2	solute carrier family 44 member 2	Slc44a2	solute carrier family 44 (choline transporter), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc44a2	solute carrier family 44 (choline transporter), member 2	Slc44a2	solute carrier family 44, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc44a2	solute carrier family 44, member 2	Slc44a2_predicted	solute carrier family 44, member 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Slc44a2_predicted	solute carrier family 44, member 2 (predicted)	RGD1309680_predicted	similar to RIKEN cDNA 1110028E10 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309680_predicted	similar to RIKEN cDNA 1110028E10 (predicted)	LOC363024_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363024_predicted	similar to RIKEN cDNA 1110028E10 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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