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Gene: Slc44a2 (solute carrier family 44 member 2) Rattus norvegicus

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Symbol:

Slc44a2

Name:

solute carrier family 44 member 2

RGD ID:

1309680

Description:

Predicted to enable choline transmembrane transporter activity and ethanolamine transmembrane transporter activity. Predicted to be involved in several processes, including choline transport; ethanolamine transport; and positive regulation of canonical NF-kappaB signal transduction. Predicted to be located in mitochondrial outer membrane and plasma membrane. Predicted to be active in membrane. Orthologous to human SLC44A2 (solute carrier family 44 member 2 (CTL2 blood group)); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

choline transporter-like protein 2; LOC363024; MGC187957; RGD1309680; similar to RIKEN cDNA 1110028E10; solute carrier family 44 (choline transporter), member 2; solute carrier family 44, member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI		GRCr8
mRatBN7.2	8	19,870,867 - 19,905,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,908,136 - 23,925,261 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,205,976 - 22,223,103 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,117,890 - 20,135,016 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,351,277 - 22,385,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,415,930 - 20,450,341 (+)	NCBI
Celera	8	21,279,682 - 21,296,806 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

familial hypercholesterolemia (ISO)

immunodeficiency 35 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,6-dimethoxyphenol (ISO)

2-bromohexadecanoic acid (ISO)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

4-phenylbutyric acid (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

allethrin (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (EXP,ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cantharidin (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

decabromodiphenyl ether (ISO)

disulfiram (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

fonofos (ISO)

furfural (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methoxychlor (EXP)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (EXP)

parathion (ISO)

potassium cyanide (ISO)

progesterone (ISO)

pyrethrins (EXP)

rac-lactic acid (ISO)

resorcinol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

Soman (EXP)

tamoxifen (ISO)

terbufos (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline transport (IEA,ISO,ISS)

ethanolamine transport (IEA,ISO,ISS)

organic cation transport (IEA)

positive regulation of canonical NF-kappaB signal transduction (ISO)

transmembrane transport (IBA,IEA,ISO)

Cellular Component

membrane (IBA)

mitochondrial outer membrane (IEA,ISO,ISS)

mitochondrion (ISO)

plasma membrane (IEA,ISO,ISS)

Molecular Function

antiporter activity (IEA)

choline transmembrane transporter activity (IEA,ISO,ISS)

ethanolamine transmembrane transporter activity (IEA,ISO,ISS)

organic cation transmembrane transporter activity (IEA)

protein binding (ISO)

transmembrane transporter activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12761501	PMID:17897319	PMID:19056867	PMID:20410607	PMID:20458337	PMID:23376485	PMID:23533145	PMID:26746385	PMID:31505169

Genomics

Comparative Map Data

Slc44a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI		GRCr8
mRatBN7.2	8	19,870,867 - 19,905,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,908,136 - 23,925,261 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,205,976 - 22,223,103 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,117,890 - 20,135,016 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,351,277 - 22,385,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,415,930 - 20,450,341 (+)	NCBI
Celera	8	21,279,682 - 21,296,806 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

SLC44A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	10,602,455 - 10,644,557 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	10,602,457 - 10,644,557 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	10,713,131 - 10,755,233 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	10,597,229 - 10,616,232 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	10,607,867 - 10,649,985 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	10,290,915 - 10,332,787 (+)	NCBI		HuRef
CHM1_1	19	10,714,363 - 10,756,490 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,728,929 - 10,771,033 (+)	NCBI		T2T-CHM13v2.0

Slc44a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	21,232,015 - 21,266,324 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	21,231,994 - 21,266,324 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	21,320,719 - 21,355,028 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	21,320,698 - 21,355,028 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	21,142,296 - 21,159,472 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,088,254 - 21,105,430 (+)	NCBI		MGSCv36	mm8
Celera	9	18,606,541 - 18,623,717 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.77	NCBI

Slc44a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,791,508 - 1,807,216 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	1,780,766 - 1,804,944 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC44A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,520,898 - 15,563,477 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,519,485 - 14,562,069 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	10,154,320 - 10,196,898 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,815,825 - 10,857,693 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,815,820 - 10,857,693 (+)	Ensembl	panpan1.1		panPan2

SLC44A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	50,557,816 - 50,571,137 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	50,551,249 - 50,607,200 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,430,322 - 50,459,391 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,076,057 - 51,093,668 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,082,994 - 51,130,343 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,292,534 - 50,316,940 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	50,715,881 - 50,744,966 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	50,957,171 - 50,986,231 (-)	NCBI		UU_Cfam_GSD_1.0

Slc44a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,459,250 - 209,491,121 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	882,221 - 895,444 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	863,612 - 895,456 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC44A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	69,365,012 - 69,399,081 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	69,364,946 - 69,399,081 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	69,742,605 - 69,783,395 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC44A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,607,224 - 9,646,535 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	9,630,113 - 9,646,389 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	10,326,343 - 10,349,797 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc44a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,655,113 - 2,677,135 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	2,655,107 - 2,678,347 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc44a2
202 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	526
Count of miRNA genes:	243
Interacting mature miRNAs:	277
Transcripts:	ENSRNOT00000049973
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24597739	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat

Markers in Region

35.MMHAP10FD5.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,902,641 - 19,902,812 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,383,166 - 22,383,336	NCBI	Rnor6.0
Rnor_5.0	8	22,437,283 - 22,437,453	UniSTS	Rnor5.0
RGSC_v3.4	8	20,448,877 - 20,449,047	UniSTS	RGSC3.4
Celera	8	21,294,103 - 21,294,273	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH129061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	28,181,164 - 28,181,405 (+)	Marker Load Pipeline
mRatBN7.2	8	19,905,013 - 19,905,254 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,385,538 - 22,385,778	NCBI	Rnor6.0
Rnor_5.0	8	22,439,655 - 22,439,895	UniSTS	Rnor5.0
RGSC_v3.4	8	20,451,249 - 20,451,489	UniSTS	RGSC3.4
Celera	8	21,296,475 - 21,296,715	UniSTS
Cytogenetic Map	8	q13	UniSTS

BF410447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,894,416 - 19,894,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,374,939 - 22,375,044	NCBI	Rnor6.0
Rnor_5.0	8	22,429,056 - 22,429,161	UniSTS	Rnor5.0
RGSC_v3.4	8	20,440,449 - 20,440,554	UniSTS	RGSC3.4
Celera	8	21,285,876 - 21,285,981	UniSTS
RH 3.4 Map	8	180.8	UniSTS
Cytogenetic Map	8	q13	UniSTS

RH135148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	19,888,674 - 19,888,876 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,369,198 - 22,369,399	NCBI	Rnor6.0
Rnor_5.0	8	22,423,315 - 22,423,516	UniSTS	Rnor5.0
RGSC_v3.4	8	20,434,367 - 20,434,568	UniSTS	RGSC3.4
Celera	8	21,280,135 - 21,280,336	UniSTS
RH 3.4 Map	8	181.9	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000049973 ⟹ ENSRNOP00000051322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,888,174 - 19,905,336 (+)	Ensembl
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109509 ⟹ ENSRNOP00000083031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115377 ⟹ ENSRNOP00000083534

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	19,870,915 - 19,905,336 (+)	Ensembl

RefSeq Acc Id:

NM_001134715 ⟹ NP_001128187

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,164,372 - 28,181,496 (+)	NCBI
mRatBN7.2	8	19,888,222 - 19,905,345 (+)	NCBI
Rnor_6.0	8	22,368,745 - 22,385,869 (+)	NCBI
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	RGD
Celera	8	21,279,682 - 21,296,806 (+)	RGD

Sequence:

show sequence

GCTGCAGCGGGTGGCGGCTGTGTCCCGGAGAGCTCCGACAGCCCGGGCGCCGTCAGGGCTGCAC
CGCAGGAATGGGGAAGGATTCGCAGCATTACTACGGGAAGCACGGGACGCCTCAGAAATATGAC
CCCACCTTTAAAGGACCCATTTACAACAGGGGATGCACGGATATCATTTGCTGTGTGTTGCTCT
TCCTGGCCATCGTAGGCTACGTGGCTGTGGGCATCATAGCCTGGACCCATGGAGACCCTCGGAA
GGTGATCTACCCCACTGATAGCCGGGGCGAGTTCTGTGGGCAAAAGGGAACAAAAAATGCGGAC
AAACCATTCTTGTTTTACTTCAACATCGTGAAGTGTGCCAGCCCCCTGGTCCTGCTGGAATTTC
ACTGTCCCACCCCTCAGATCTGCGTGAAGCAGTGTCCAGACCGCTATCTCACCTTTCTGAGTGC
GCGCAACTCTCGCGACTTTGACTACTACAAGCAGTTCTGTGTGCCCGGCTTCAAGAACAATAAA
GGGGTAGCTGAGGTGCTCAGAGATGGGGAGTGCCCAGCGGTTATCATCCCCAGCAAACCCTTGG
CCCAGCGGTGCTTCCCGGCCATCCATGCCAGCAAAGGGGTCCTCATGGTGGGCAATGAGACGAC
CTATGAGGACGGACACGGCACCAGGAAGAATGTTACAGATCTAGTGGAGGGTGCCAAAAAGGCC
AACAAGGTTCTAGAGGCCCGGCAGCTCGCCATGCAGATTTTTGAAGATTACACTGTATCCTGGT
ACTGGATTGTCATAGGTCTGGTCATCGCCATGCTGCTGAGCCTCATGTTCATTGTCCTGCTGCG
ATTCCTGGCAGGCGTCATGGTCTGGGTGATGATCGTCATGGTGATTCTGGTACTTGGCTATGGC
ATATTCCACTGCTACGCGGAGTACTCGAGACTCCGTGGAGAGGCAGGCTCCGACGTCTCCCTGG
TGGACCTTGGCTTCCAGACGGACCTCCGAGTGTACCTGCACTTGAGGCAGACTTGGATGGCTTT
CATGATCATTTTAAGCATCCTGGAAGTGGTCATCATCCTGTTACTCATCTTTCTGCGCAAAAGG
ATCTTGATCGCCATAGCCCTCATCAAAGAAGCCAGCAGGGCTGTGGGACATGTCATGTGCTCCA
TGCTCTACCCACTGGTGACTTTCTTCCTCTTGTGTCTCTGCATTGCCTACTGGGCCAGCACTTC
TGTCTTCCTGTCTACCTCTAATGTAGCCGTGTACAAGATTGTTGATGACACGCCCTGCCCACTT
TTGGGGAAAACCTGCAACCCAGAGACCTTCCCATTGAATGAGAGCCGCCAGTGTCCTAATGGCC
GCTGTCAGTTTGCCTTCTATGGCGGCGAGTCGACCTACCACCGTGCCCTGCTGGGCCTGCAGAT
CTTCAATGCATTCATGTTCTTCTGGCTAGCCAACTTCGTGCTAGCCCTGGGCCAGGTGACACTG
GCTGGAGCCTTTGCCTCCTATTACTGGGCTATGCGAAAGCCCGATGACATGCCTGCCTTCCCCC
TCTTCTCTGCTTTTGGCCGCGCACTCAGGTACCACACGGGCTCCTTGGCTTTTGGCTCTCTTAT
CCTAGCCATCGTGCAGATCATCCGAGTGATGCTGGAGTACCTGGATCAGCGCCTGAAAGCTGCA
CAGAACAAGTTTGCCAAGTTCCTCATGGTCTGTCTCAAGTGCTGCTTCTGGTGCCTAGAGAAGT
TTATCAAATTCCTGAATAGGAATGCCTACATCATGATTGCTATCTATGGCACCAACTTCTGCAC
CTCAGCCAGGAACGCCTTCTTCCTGCTTATGAGAAATATCATCAGGGTGGCCGTCCTGGACAAA
GTTACAGACTTCCTCTTCCTGTTGGGCAAACTTCTGATTGTGGGTAGCGTGGGCATCCTGGCCT
TCTTCTTCTTCACCCATCGGATCAGAATTGTGCAAGACACGGCCCCACCTCTCAATTATTATTG
GGTCCCCATACTGACAGTGATCATTGGCTCCTACTTGATCGCGCACGGCTTCTTCAGCGTCTAT
GGCATGTGCGTGGACACACTGTTCCTCTGTTTCTTGGAGGATCTGGAGAGAAACGACGGCTCAG
CCGAGAGGCCTTACTTCATGTCTTCCACTCTCAAGAAACTCCTGAATAAAACCAACAAGAAAGT
AGCAGAATCCTAAAGATGCCTGCCGCCCAGCCCTCTCAGGACGCTGTGATCCGGTGCTTGCTGT
GCAGCTGGGTCCCAGTTCCCAGCTCATCAGACTTGTGTAACGTCACATCACTGCCTCTCTGCCA
CCCTCCCCGAGTCCCCATTTCCAGGGACCCAGAGGAATTGGGGCATCTCTGTCCTATGCCAAAG
GGCACTTGGGAGTTTTCGGTGCAGCCCTGGGAAATGGGACAGAATGGGTCTCTCCAATCCTTGC
TGGCTCAGACGGTGCCAATATGGCGAAGCGACTTGAAGTTGAGGATGGGAGATGGCCCGAGGAT
GTGTGCAGCCAACTTCTTTGTATTTCGGTAACCCTTCTGGCCAAGAGGGGAAGACTGGATGAGA
CGAGCTCAATGAACACTAGCTCCAAGCTTCCTAGCCAGAATAAAACTGGATCTCCACGACTGGC
TGATGTCGCCTAAGGGCCAACAAATAACATGTCTCACTCTTAGTCCTTTGCAGCCTAGACAGAC
GGTAAGAGGCCCACCTGCTTCTCTTCCACCAGGCTCCATAGCTGAGTGGAGTCACCAAGAGTGC
CTTCACATGTAACCCCACCTCCAGCCTGGGGTGGCTGGGGTCACAGGAAGGAGTGTGTACCCAG
AACTGGAGGAGTTTTCCAGATAAACATCCATCCGGGAGGAGGGCCCTGTGCAAGGAACGAGAGC
GGTGGTGGGGGTTGGGAGTGGCTCTGGAAAACAGGCTTCTGTACTTAGATCCTACAGAGTACCT
TTGACTGATGGCTTCCAAACGGAAAACTTGAGGTTGGAAAATGAGTGAAAATAGGGTCTGCCTC
CCCACCCCTCTCTCTTCCAGTAATACACACTGCCCTCTTTGTGAGAGGAAAGAAACTGAAGTTC
ACCCAAGGGATGGTTTCAGGGGATGAGGTGTGGGTGTGTTGTGTATTCCAAGTTAACTAGGCCT
ATCTGGTTTCTTTCACTTGAAACTAGAGACTCTGTTTGCCAAACTTCTTAATCTTGGGGGCCAG
TAGACTGGTTCCTCACTTTACCTATCATATGCTAAGACCCTCCCCTCACCCCACTATGGCTATC
CGTGAGATACCAGGATGTTGGAAACCAGAGGCTCCCAGCCTGGAGGCCCAGGCTTTCCTATGCC
TGCCTGTGTGCCATCGCGCCCCACCCTTCTCTTGTATGCCCTGCCCTGTGCTTACGTAATTGCA
TTCCAGCCAGTTAATAAAGTGCCTCTTGTACAGATAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242651 ⟹ XP_006242713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI
mRatBN7.2	8	19,870,868 - 19,905,345 (+)	NCBI
Rnor_6.0	8	22,351,278 - 22,385,869 (+)	NCBI
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI

Sequence:

show sequence

GGGGCGGGGTCAGGCGGGGCAGGGCGGGGCCTGAGGCGCGGTGTCTCCCCGCCCGCTTGGGTTG
GGGTCGCTCTGGCTTCGGACTCAGCTCCCCTCGGTTGCGGCCATGGAGGACGATCGGAAGGACG
CAGTGTATGGGACGCCTCAGAAATATGACCCCACCTTTAAAGGACCCATTTACAACAGGGGATG
CACGGATATCATTTGCTGTGTGTTGCTCTTCCTGGCCATCGTAGGCTACGTGGCTGTGGGCATC
ATAGCCTGGACCCATGGAGACCCTCGGAAGGTGATCTACCCCACTGATAGCCGGGGCGAGTTCT
GTGGGCAAAAGGGAACAAAAAATGCGGACAAACCATTCTTGTTTTACTTCAACATCGTGAAGTG
TGCCAGCCCCCTGGTCCTGCTGGAATTTCACTGTCCCACCCCTCAGATCTGCGTGAAGCAGTGT
CCAGACCGCTATCTCACCTTTCTGAGTGCGCGCAACTCTCGCGACTTTGACTACTACAAGCAGT
TCTGTGTGCCCGGCTTCAAGAACAATAAAGGGGTAGCTGAGGTGCTCAGAGATGGGGAGTGCCC
AGCGGTTATCATCCCCAGCAAACCCTTGGCCCAGCGGTGCTTCCCGGCCATCCATGCCAGCAAA
GGGGTCCTCATGGTGGGCAATGAGACGACCTATGAGGACGGACACGGCACCAGGAAGAATGTTA
CAGATCTAGTGGAGGGTGCCAAAAAGGCCAACAAGGTTCTAGAGGCCCGGCAGCTCGCCATGCA
GATTTTTGAAGATTACACTGTATCCTGGTACTGGATTGTCATAGGTCTGGTCATCGCCATGCTG
CTGAGCCTCATGTTCATTGTCCTGCTGCGATTCCTGGCAGGCGTCATGGTCTGGGTGATGATCG
TCATGGTGATTCTGGTACTTGGCTATGGCATATTCCACTGCTACGCGGAGTACTCGAGACTCCG
TGGAGAGGCAGGCTCCGACGTCTCCCTGGTGGACCTTGGCTTCCAGACGGACCTCCGAGTGTAC
CTGCACTTGAGGCAGACTTGGATGGCTTTCATGATCATTTTAAGCATCCTGGAAGTGGTCATCA
TCCTGTTACTCATCTTTCTGCGCAAAAGGATCTTGATCGCCATAGCCCTCATCAAAGAAGCCAG
CAGGGCTGTGGGACATGTCATGTGCTCCATGCTCTACCCACTGGTGACTTTCTTCCTCTTGTGT
CTCTGCATTGCCTACTGGGCCAGCACTTCTGTCTTCCTGTCTACCTCTAATGTAGCCGTGTACA
AGATTGTTGATGACACGCCCTGCCCACTTTTGGGGAAAACCTGCAACCCAGAGACCTTCCCATT
GAATGAGAGCCGCCAGTGTCCTAATGGCCGCTGTCAGTTTGCCTTCTATGGCGGCGAGTCGACC
TACCACCGTGCCCTGCTGGGCCTGCAGATCTTCAATGCATTCATGTTCTTCTGGCTAGCCAACT
TCGTGCTAGCCCTGGGCCAGGTGACACTGGCTGGAGCCTTTGCCTCCTATTACTGGGCTATGCG
AAAGCCCGATGACATGCCTGCCTTCCCCCTCTTCTCTGCTTTTGGCCGCGCACTCAGGTACCAC
ACGGGCTCCTTGGCTTTTGGCTCTCTTATCCTAGCCATCGTGCAGATCATCCGAGTGATGCTGG
AGTACCTGGATCAGCGCCTGAAAGCTGCACAGAACAAGTTTGCCAAGTTCCTCATGGTCTGTCT
CAAGTGCTGCTTCTGGTGCCTAGAGAAGTTTATCAAATTCCTGAATAGGAATGCCTACATCATG
ATTGCTATCTATGGCACCAACTTCTGCACCTCAGCCAGGAACGCCTTCTTCCTGCTTATGAGAA
ATATCATCAGGGTGGCCGTCCTGGACAAAGTTACAGACTTCCTCTTCCTGTTGGGCAAACTTCT
GATTGTGGGTAGCGTGGGCATCCTGGCCTTCTTCTTCTTCACCCATCGGATCAGAATTGTGCAA
GACACGGCCCCACCTCTCAATTATTATTGGGTCCCCATACTGACAGTGATCATTGGCTCCTACT
TGATCGCGCACGGCTTCTTCAGCGTCTATGGCATGTGCGTGGACACACTGTTCCTCTGTTTCTT
GGAGGATCTGGAGAGAAACGACGGCTCAGCCGAGAGGCCTTACTTCATGTCTTCCACTCTCAAG
AAACTCCTGAATAAAACCAACAAGAAAGTAGCAGAATCCTAAAGATGCCTGCCGCCCAGCCCTC
TCAGGACGCTGTGATCCGGTGCTTGCTGTGCAGCTGGGTCCCAGTTCCCAGCTCATCAGACTTG
TGTAACGTCACATCACTGCCTCTCTGCCACCCTCCCCGAGTCCCCATTTCCAGGGACCCAGAGG
AATTGGGGCATCTCTGTCCTATGCCAAAGGGCACTTGGGAGTTTTCGGTGCAGCCCTGGGAAAT
GGGACAGAATGGGTCTCTCCAATCCTTGCTGGCTCAGACGGTGCCAATATGGCGAAGCGACTTG
AAGTTGAGGATGGGAGATGGCCCGAGGATGTGTGCAGCCAACTTCTTTGTATTTCGGTAACCCT
TCTGGCCAAGAGGGGAAGACTGGATGAGACGAGCTCAATGAACACTAGCTCCAAGCTTCCTAGC
CAGAATAAAACTGGATCTCCACGACTGGCTGATGTCGCCTAAGGGCCAACAAATAACATGTCTC
ACTCTTAGTCCTTTGCAGCCTAGACAGACGGTAAGAGGCCCACCTGCTTCTCTTCCACCAGGCT
CCATAGCTGAGTGGAGTCACCAAGAGTGCCTTCACATGTAACCCCACCTCCAGCCTGGGGTGGC
TGGGGTCACAGGAAGGAGTGTGTACCCAGAACTGGAGGAGTTTTCCAGATAAACATCCATCCGG
GAGGAGGGCCCTGTGCAAGGAACGAGAGCGGTGGTGGGGGTTGGGAGTGGCTCTGGAAAACAGG
CTTCTGTACTTAGATCCTACAGAGTACCTTTGACTGATGGCTTCCAAACGGAAAACTTGAGGTT
GGAAAATGAGTGAAAATAGGGTCTGCCTCCCCACCCCTCTCTCTTCCAGTAATACACACTGCCC
TCTTTGTGAGAGGAAAGAAACTGAAGTTCACCCAAGGGATGGTTTCAGGGGATGAGGTGTGGGT
GTGTTGTGTATTCCAAGTTAACTAGGCCTATCTGGTTTCTTTCACTTGAAACTAGAGACTCTGT
TTGCCAAACTTCTTAATCTTGGGGGCCAGTAGACTGGTTCCTCACTTTACCTATCATATGCTAA
GACCCTCCCCTCACCCCACTATGGCTATCCGTGAGATACCAGGATGTTGGAAACCAGAGGCTCC
CAGCCTGGAGGCCCAGGCTTTCCTATGCCTGCCTGTGTGCCATCGCGCCCCACCCTTCTCTTGT
ATGCCCTGCCCTGTGCTTACGTAATTGCATTCCAGCCAGTTAATAAAGTGCCTCTTGTACAGAT
A

hide sequence

RefSeq Acc Id:

XM_039081711 ⟹ XP_038937639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,164,180 - 28,180,331 (+)	NCBI
mRatBN7.2	8	19,888,033 - 19,904,081 (+)	NCBI

RefSeq Acc Id:

XM_063265728 ⟹ XP_063121798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,164,180 - 28,181,496 (+)	NCBI

RefSeq Acc Id:

XM_063265729 ⟹ XP_063121799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128187	(Get FASTA)	NCBI Sequence Viewer
	XP_006242713	(Get FASTA)	NCBI Sequence Viewer
	XP_038937639	(Get FASTA)	NCBI Sequence Viewer
	XP_063121798	(Get FASTA)	NCBI Sequence Viewer
	XP_063121799	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68183	(Get FASTA)	NCBI Sequence Viewer
	B4F795	(Get FASTA)	NCBI Sequence Viewer
	EDL78302	(Get FASTA)	NCBI Sequence Viewer
	EDL78303	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051322.5
	ENSRNOP00000083031.1
	ENSRNOP00000083534.1

RefSeq Acc Id:

NP_001128187 ⟸ NM_001134715

- UniProtKB:

B4F795 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MGKDSQHYYGKHGTPQKYDPTFKGPIYNRGCTDIICCVLLFLAIVGYVAVGIIAWTHGDPRKVI
YPTDSRGEFCGQKGTKNADKPFLFYFNIVKCASPLVLLEFHCPTPQICVKQCPDRYLTFLSARN
SRDFDYYKQFCVPGFKNNKGVAEVLRDGECPAVIIPSKPLAQRCFPAIHASKGVLMVGNETTYE
DGHGTRKNVTDLVEGAKKANKVLEARQLAMQIFEDYTVSWYWIVIGLVIAMLLSLMFIVLLRFL
AGVMVWVMIVMVILVLGYGIFHCYAEYSRLRGEAGSDVSLVDLGFQTDLRVYLHLRQTWMAFMI
ILSILEVVIILLLIFLRKRILIAIALIKEASRAVGHVMCSMLYPLVTFFLLCLCIAYWASTSVF
LSTSNVAVYKIVDDTPCPLLGKTCNPETFPLNESRQCPNGRCQFAFYGGESTYHRALLGLQIFN
AFMFFWLANFVLALGQVTLAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILA
IVQIIRVMLEYLDQRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTSA
RNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWVP
ILTVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKVAE
S

hide sequence

RefSeq Acc Id:	XP_006242713 ⟸ XM_006242651
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZYC2 (UniProtKB/TrEMBL), A6JNR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDDRKDAVYGTPQKYDPTFKGPIYNRGCTDIICCVLLFLAIVGYVAVGIIAWTHGDPRKVIYP TDSRGEFCGQKGTKNADKPFLFYFNIVKCASPLVLLEFHCPTPQICVKQCPDRYLTFLSARNSR DFDYYKQFCVPGFKNNKGVAEVLRDGECPAVIIPSKPLAQRCFPAIHASKGVLMVGNETTYEDG HGTRKNVTDLVEGAKKANKVLEARQLAMQIFEDYTVSWYWIVIGLVIAMLLSLMFIVLLRFLAG VMVWVMIVMVILVLGYGIFHCYAEYSRLRGEAGSDVSLVDLGFQTDLRVYLHLRQTWMAFMIIL SILEVVIILLLIFLRKRILIAIALIKEASRAVGHVMCSMLYPLVTFFLLCLCIAYWASTSVFLS TSNVAVYKIVDDTPCPLLGKTCNPETFPLNESRQCPNGRCQFAFYGGESTYHRALLGLQIFNAF MFFWLANFVLALGQVTLAGAFASYYWAMRKPDDMPAFPLFSAFGRALRYHTGSLAFGSLILAIV QIIRVMLEYLDQRLKAAQNKFAKFLMVCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTSARN AFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWVPIL TVIIGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKVAES hide sequence

Ensembl Acc Id:

ENSRNOP00000051322 ⟸ ENSRNOT00000049973

RefSeq Acc Id:	XP_038937639 ⟸ XM_039081711
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QQY0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083534 ⟸ ENSRNOT00000115377

Ensembl Acc Id:

ENSRNOP00000083031 ⟸ ENSRNOT00000109509

RefSeq Acc Id:	XP_063121799 ⟸ XM_063265729
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G961 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121798 ⟸ XM_063265728
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QQY0 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B4F795-F1-model_v2	AlphaFold	B4F795	1-705	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695779

Promoter ID:

EPDNEW_R6303

Type:

single initiation site

Name:

Slc44a2_1

Description:

solute carrier family 44 member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	22,368,734 - 22,368,794	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309680	AgrOrtholog
BioCyc Gene	G2FUF-31424	BioCyc
Ensembl Genes	ENSRNOG00000031824	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000049973.6	UniProtKB/TrEMBL
	ENSRNOT00000109509.1	UniProtKB/TrEMBL
	ENSRNOT00000115377.1	UniProtKB/TrEMBL
InterPro	Choline_transptr-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363024	UniProtKB/Swiss-Prot
NCBI Gene	363024	ENTREZGENE
PANTHER	CHOLINE TRANSPORTER-LIKE PROTEIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12385	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Choline_transpo	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc44a2	PhenoGen
RatGTEx	ENSRNOG00000031824	RatGTEx
	ENSRNOG00055012615	RatGTEx
	ENSRNOG00060023470	RatGTEx
	ENSRNOG00065012261	RatGTEx
UniProt	A0A8I5ZYC2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G961	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QQY0	ENTREZGENE, UniProtKB/TrEMBL
	A6JNR3	ENTREZGENE, UniProtKB/TrEMBL
	B4F795	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc44a2	solute carrier family 44 member 2	Slc44a2	solute carrier family 44 (choline transporter), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc44a2	solute carrier family 44 (choline transporter), member 2	Slc44a2	solute carrier family 44, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc44a2	solute carrier family 44, member 2	Slc44a2_predicted	solute carrier family 44, member 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Slc44a2_predicted	solute carrier family 44, member 2 (predicted)	RGD1309680_predicted	similar to RIKEN cDNA 1110028E10 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1309680_predicted	similar to RIKEN cDNA 1110028E10 (predicted)	LOC363024_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363024_predicted	similar to RIKEN cDNA 1110028E10 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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