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Gene: SLC44A2 (solute carrier family 44 member 2 (CTL2 blood group)) Pan paniscus

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Symbol:

SLC44A2

Name:

solute carrier family 44 member 2 (CTL2 blood group)

RGD ID:

11956355

Description:

ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); familial hypercholesterolemia (ortholog); immunodeficiency 35 (ortholog); FOUND IN membrane (inferred); mitochondrial outer membrane (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

choline transporter-like protein 2; solute carrier family 44 member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,520,898 - 15,563,477 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,519,485 - 14,562,069 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	10,154,320 - 10,196,898 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,815,825 - 10,857,693 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,815,820 - 10,857,693 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

familial hypercholesterolemia (ISO)

immunodeficiency 35 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline transport (IEA,ISO)

ethanolamine transport (IEA)

phosphatidylcholine biosynthetic process (IEA)

positive regulation of canonical NF-kappaB signal transduction (ISO)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

mitochondrial outer membrane (IEA)

mitochondrion (IEA)

plasma membrane (IEA)

Molecular Function

antiporter activity (IEA)

choline transmembrane transporter activity (IEA,ISO)

ethanolamine transmembrane transporter activity (IEA)

protein binding (ISO)

transmembrane transporter activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SLC44A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,520,898 - 15,563,477 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,519,485 - 14,562,069 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	10,154,320 - 10,196,898 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	10,815,825 - 10,857,693 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	10,815,820 - 10,857,693 (+)	Ensembl	panpan1.1		panPan2

SLC44A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	10,602,455 - 10,644,557 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	10,602,457 - 10,644,557 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	10,713,131 - 10,755,233 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	10,597,229 - 10,616,232 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	10,607,867 - 10,649,985 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	10,290,915 - 10,332,787 (+)	NCBI		HuRef
CHM1_1	19	10,714,363 - 10,756,490 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,728,929 - 10,771,033 (+)	NCBI		T2T-CHM13v2.0

Slc44a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	21,232,015 - 21,266,324 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	21,231,994 - 21,266,324 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	21,320,719 - 21,355,028 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	21,320,698 - 21,355,028 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	21,142,296 - 21,159,472 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,088,254 - 21,105,430 (+)	NCBI		MGSCv36	mm8
Celera	9	18,606,541 - 18,623,717 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.77	NCBI

Slc44a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,147,023 - 28,181,496 (+)	NCBI		GRCr8
mRatBN7.2	8	19,870,867 - 19,905,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	19,870,888 - 19,905,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	23,908,136 - 23,925,261 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,205,976 - 22,223,103 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,117,890 - 20,135,016 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,351,277 - 22,385,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,368,745 - 22,385,864 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	22,405,625 - 22,439,986 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	20,433,914 - 20,451,580 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	20,415,930 - 20,450,341 (+)	NCBI
Celera	8	21,279,682 - 21,296,806 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

Slc44a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,791,508 - 1,807,216 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	1,780,766 - 1,804,944 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC44A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	50,557,816 - 50,571,137 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	50,551,249 - 50,607,200 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,430,322 - 50,459,391 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	51,076,057 - 51,093,668 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	51,082,994 - 51,130,343 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,292,534 - 50,316,940 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	50,715,881 - 50,744,966 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	50,957,171 - 50,986,231 (-)	NCBI		UU_Cfam_GSD_1.0

Slc44a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,459,250 - 209,491,121 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	882,221 - 895,444 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	863,612 - 895,456 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC44A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	69,365,012 - 69,399,081 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	69,364,946 - 69,399,081 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	69,742,605 - 69,783,395 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC44A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,607,224 - 9,646,535 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	9,630,113 - 9,646,389 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	10,326,343 - 10,349,797 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc44a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,655,113 - 2,677,135 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	2,655,107 - 2,678,347 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003809580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008961838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008961840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063599871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000056348 ⟹ ENSPPAP00000033472

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	10,815,820 - 10,857,693 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000056351 ⟹ ENSPPAP00000033475

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	10,839,144 - 10,857,693 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000056354 ⟹ ENSPPAP00000033478

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	10,839,145 - 10,857,693 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000056359 ⟹ ENSPPAP00000033483

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	10,839,278 - 10,856,153 (+)	Ensembl

RefSeq Acc Id:

XM_003809580 ⟹ XP_003809628

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	15,544,394 - 15,563,477 (+)	NCBI
NHGRI_mPanPan1	19	14,542,984 - 14,562,069 (+)	NCBI
Mhudiblu_PPA_v0	19	10,177,817 - 10,196,898 (+)	NCBI
PanPan1.1	19	10,839,145 - 10,857,693 (+)	NCBI

Sequence:

show sequence

GGCCGCCCCGCCTGGCGCTGTGCTGGGAGGAGCCGCCGCCAGTCGCGCGGTCAGTGCCTCCCTC
CAGACTCGGGAGGGCCGAGGGGGCGCGGGAGAGAGCGCGGGCGGCCGCCGGGGCTGGTCGCCTG
CAGGGATGGGGGACGAGCGGCCCCACTACTACGGGAAACACGGAACGCCACAGAAGTATGATCC
CACTTTCAAAGGACCCATTTACAATAGGGGCTGCACGGATGTCATATGCTGTGTGTTCCTGCTC
CTGGCCATTGTGGGCTACGTGGCTGTAGGCATCATAGCCTGGACTCATGGAGACCCTCGAAAGG
TGATCTACCCCACTGATAGCCGGGGCGAGTTCTGCGGGCAGAAGGGCACAAAAAACGAGAACAA
ACCCTATCTGTTTTATTTCAACATTGTGAAATGTGCCAGCCCCCTGGTTCTGCTGGAATTCCAA
TGTCCCACCCCCCAGATCTGCGTGGAAAAATGCCCCGACCGCTACCTCACGTACCTGAATGCTC
GCAGCTCCCGGGACTTTGAGTACTATAAGCAGTTCTGTGTTCCTGGCTTCAAGAACAATAAAGG
AGTGGCTGAGGTGCTTCGAGATGGTGACTGCCCTGCTGTCCTCATCCCCAGCAAACCCTTGGCC
CGGAGATGCTTCCCCGCTATCCACGCCTACAAGGGTGTCCTGATGGTGGGCAATGAGACGACCT
ATGAGGATGGGCATGGCTCCCGGAAAAACATCACAGACCTGGTGGAGGGCGCCAAGAAAGCCAA
TGGAGTCCTAGAGGCGCGGCAACTCGCCATGCGCATATTTGAAGACTACACCGTCTCTTGGTAC
TGGATTATCATAGGCCTGGTCATTGCCATGGCGATGAGCCTCCTGTTCATCATCCTGCTTCGCT
TCCTGGCTGGTATTATGGTCTGGGTGATGATCATCATGGTGATTCTGGTGCTGGGCTACGGAAT
ATTTCACTGCTACATGGAGTACTCCCGACTGCGTGGTGAGGCCGGCTCTGATGTCTCTTTGGTG
GACCTCGGCTTTCAGACGGATTTCCGGGTGTACCTGCACTTACGGCAGACCTGGTTGGCCTTTA
TGATCATTCTGAGTATCCTTGAAGTCATTATCATCTTGCTGCTCATCTTTCTCCGGAAGAGAAT
TCTCATCGCGATTGCACTCATCAAAGAAGCCAGCAGGGCTGTGGGATACGTCATGTGCTCCTTG
CTCTACCCACTGGTCACCTTCTTCTTGCTGTGCCTCTGCATCGCCTACTGGGCCAGCACTGCTG
TCTTCCTGTCCACTTCCAACGAAGCGGTCTATAAGATCTTTGATGACAGCCCCTGCCCATTTAC
TGCGAAAACCTGCAACCCAGAGACCTTCCCCTCCTCCAATGAGTCCCGCCAATGCCCCAATGCC
CGTTGCCAGTTCGCCTTCTACGGTGGTGAGTCGGGCTACCACCGGGCCCTGCTGGGCCTGCAGA
TCTTCAATGCCTTCATGTTCTTCTGGTTGGCCAACTTCGTGCTGGCGCTGGGCCAGGTCACGCT
GGCCGGGGCCTTTGCCTCCTACTACTGGGCCCTGCGCAAGCCGGACGACCTGCCGGCCTTCCCG
CTCTTCTCTGCCTTTGGCCGGGCGCTCAGGTACCACACAGGCTCCCTGGCCTTTGGCGCGCTCA
TCCTGGCCATTGTGCAGATCATCCGTGTGATACTCGAGTACCTGGATCAGCGGCTGAAAGCTGC
AGAGAACAAGTTTGCCAAGTGCCTCATGACCTGTCTCAAATGCTGCTTCTGGTGCCTGGAGAAG
TTCATCAAATTCCTCAATAGGAATGCCTACATCATGATTGCCATCTACGGCACCAATTTCTGCA
CCTCGGCCAGGAATGCCTTCTTCCTGCTCATGAGAAACATCATCAGAGTGGCTGTCCTGGATAA
AGTTACTGACTTCCTCTTCCTGTTGGGCAAACTTCTGATCGTTGGTAGTGTGGGGATCCTGGCT
TTCTTCTTCTTCACCCACCGTATCAGGATCGTGCAGGATACAGCACCACCCCTCAATTATTACT
GGGTTCCTATACTGACGGTGATCGTTGGCTCCTACTTGATTGCACACGGTTTCTTCAGCGTCTA
TGGCATGTGTGTGGACACGCTGTTCCTCTGCTTCTTGGAGGACCTGGAGAGGAATGACGGCTCG
GCCGAGAGGCCTTACTTCATGTCTTCCACCCTCAAGAAACTCTTGAACAAGACCAACAAGAAGG
CAGCGGAGTCCTGAAGGCCCCGCGCTCCCCACCTCTCAAGGAGTCTCATGCCGCAGGGTGCTCA
GTAGCTGGGTCTGTTCCCCCAGCCCCTTGGGCTCACCCGAAGTCCTATCACTGCCGCTTTGCCC
CTCCCCATGAGCCAGATCCCACCAGTTTCTGGACGTGGAGAGTCTGGGGCATCTCCTTCTTATG
CCAAGGGGCGCTTGGAGTTTTCATGGCTGCCCCTCCAGACTGCGAGAAACAAGTAAAAACCCAT
TGGGGCCTCTTGATGTCTGGGATGGCACGTGGCCCGACCTCCGCAAGCTCCCTCATGCTTCCTG
TCCCCCGCTTACACGACAACGGGCCAGACCACAGGAAGGACGGTGTTTGTGTCTGAGGGAGCTG
CTGGCCACAGTGAACACCCACGTTTATTCCTGCCTGCTCCGGCCAGGACTGAACCCCTTCTCCA
CACCTGAACAGTTGGCTCAAGGGCCACCAGAAGCATTTCTTTATTATTATTATTTTTTAACCTG
GACATGCATTAAAGGGTCTATTAGCTTTCTTTCCGTCTGTCTCAACAGCTGAGATGGGGCCGCC
AAGGAGTGCCTTCCTTTTGCTCCCTCCTAGCTGGGAGTGACTGGGGTGGGAGTGTGTGTGCCCA
GGTGGGGGTGTCTCCTGGCTGGGAAGGAGGGAAAGGGAGGGAGAGTTTTGCGGGGGTTGGCAGT
GGAGAGCGGGCTGGAGAGGAGATGGCTAATAGCTGTTTAATGGAAACCTGCTGGGCTGGAGGGA
GTTAGGCTGAATTTCCCGACTTCCTCTGCCAGTTATTGACACAGCTCTCTTTGTAAGAGAGGAA
AGAAACTAAACCCACCCAAGGGATGATTGCAGGGGGAGAGGTGGAGGGCAGATGCCCTGGGCAA
ACCGGGCCCCTCTGCCCACACACCTCACTTGATCCTTTTGCCAAACTTGTCAAACTCAGGGGAA
CTGGCTTCCCAGTTGCCCCTTTGCCATATTCCAAGTCCCCCTCAGACTTCATGTCTCTGCTCAT
CAGCACTGTCCCAGGATCCTGGAGAGGGAGAACCCCTGGCCCCAGGGGAAAGAGGGGGGGTCTC
CCGTTTCCTGTGCCTGCACCAGCCCTGCCCCCATTGCGTCTGCACACCCCTGCGTGTAACTGCA
TTCCAACCACTAATAAAGTGCCTATTGTACAGGTC

hide sequence

RefSeq Acc Id:

XM_008961838 ⟹ XP_008960086

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	15,544,412 - 15,563,477 (+)	NCBI
NHGRI_mPanPan1	19	14,543,004 - 14,562,069 (+)	NCBI
Mhudiblu_PPA_v0	19	10,177,844 - 10,196,898 (+)	NCBI
PanPan1.1	19	10,839,144 - 10,857,693 (+)	NCBI

Sequence:

show sequence

GGGCCGCCCCGCCTGGCGCTGTGCTGGGAGGAGCCGCCGCCAGTCGCGCGGTCAGTGCCTCCCT
CCAGACTCGGGAGGGCCGAGGGGGCGCGGGAGAGAGCGCGGGCGGCCGCCGGGGCTGGTCGCCT
GCAGGGATGGGGGACGAGCGGCCCCACTACTACGGGAAACACGGAACGCCACAGAAGTATGATC
CCACTTTCAAAGGACCCATTTACAATAGGGGCTGCACGGATGTCATATGCTGTGTGTTCCTGCT
CCTGGCCATTGTGGGCTACGTGGCTGTAGGCATCATAGCCTGGACTCATGGAGACCCTCGAAAG
GTGATCTACCCCACTGATAGCCGGGGCGAGTTCTGCGGGCAGAAGGGCACAAAAAACGAGAACA
AACCCTATCTGTTTTATTTCAACATTGTGAAATGTGCCAGCCCCCTGGTTCTGCTGGAATTCCA
ATGTCCCACCCCCCAGATCTGCGTGGAAAAATGCCCCGACCGCTACCTCACGTACCTGAATGCT
CGCAGCTCCCGGGACTTTGAGTACTATAAGCAGTTCTGTGTTCCTGGCTTCAAGAACAATAAAG
GAGTGGCTGAGGTGCTTCGAGATGGTGACTGCCCTGCTGTCCTCATCCCCAGCAAACCCTTGGC
CCGGAGATGCTTCCCCGCTATCCACGCCTACAAGGGTGTCCTGATGGTGGGCAATGAGACGACC
TATGAGGATGGGCATGGCTCCCGGAAAAACATCACAGACCTGGTGGAGGGCGCCAAGAAAGCCA
ATGGAGTCCTAGAGGCGCGGCAACTCGCCATGCGCATATTTGAAGACTACACCGTCTCTTGGTA
CTGGATTATCATAGGCCTGGTCATTGCCATGGCGATGAGCCTCCTGTTCATCATCCTGCTTCGC
TTCCTGGCTGGTATTATGGTCTGGGTGATGATCATCATGGTGATTCTGGTGCTGGGCTACGGAA
TATTTCACTGCTACATGGAGTACTCCCGACTGCGTGGTGAGGCCGGCTCTGATGTCTCTTTGGT
GGACCTCGGCTTTCAGACGGATTTCCGGGTGTACCTGCACTTACGGCAGACCTGGTTGGCCTTT
ATGATCATTCTGAGTATCCTTGAAGTCATTATCATCTTGCTGCTCATCTTTCTCCGGAAGAGAA
TTCTCATCGCGATTGCACTCATCAAAGAAGCCAGCAGGGCTGTGGGATACGTCATGTGCTCCTT
GCTCTACCCACTGGTCACCTTCTTCTTGCTGTGCCTCTGCATCGCCTACTGGGCCAGCACTGCT
GTCTTCCTGTCCACTTCCAACGAAGCGGTCTATAAGATCTTTGATGACAGCCCCTGCCCATTTA
CTGCGAAAACCTGCAACCCAGAGACCTTCCCCTCCTCCAATGAGTCCCGCCAATGCCCCAATGC
CCGTTGCCAGTTCGCCTTCTACGGTGGTGAGTCGGGCTACCACCGGGCCCTGCTGGGCCTGCAG
ATCTTCAATGCCTTCATGTTCTTCTGGTTGGCCAACTTCGTGCTGGCGCTGGGCCAGGTCACGC
TGGCCGGGGCCTTTGCCTCCTACTACTGGGCCCTGCGCAAGCCGGACGACCTGCCGGCCTTCCC
GCTCTTCTCTGCCTTTGGCCGGGCGCTCAGGTACCACACAGGCTCCCTGGCCTTTGGCGCGCTC
ATCCTGGCCATTGTGCAGATCATCCGTGTGATACTCGAGTACCTGGATCAGCGGCTGAAAGCTG
CAGAGAACAAGTTTGCCAAGTGCCTCATGACCTGTCTCAAATGCTGCTTCTGGTGCCTGGAGAA
GTTCATCAAATTCCTCAATAGGAATGCCTACATCATGATTGCCATCTACGGCACCAATTTCTGC
ACCTCGGCCAGGAATGCCTTCTTCCTGCTCATGAGAAACATCATCAGAGTGGCTGTCCTGGATA
AAGTTACTGACTTCCTCTTCCTGTTGGGCAAACTTCTGATCGTTGGTAGTGTGGGGATCCTGGC
TTTCTTCTTCTTCACCCACCGTATCAGGATCGTGCAGGATACAGCACCACCCCTCAATTATTAC
TGGGTTCCTATACTGACGGTGATCGTTGGCTCCTACTTGATTGCACACGGTTTCTTCAGCGTCT
ATGGCATGTGTGTGGACACGCTGTTCCTCTGCTTCTGTGAGGACCTGGAAAGGAATGACGGCTC
TCAGGAGCGACCCTACTTCATGTCGCCCGAGCTGAGAGACATCCTGTTGAAGGGGAGTGCGGAG
GAGGGGAAGCGGGCAGAAGCCGAGGAGTAGAGATGGAGGACCTGGAGAGGAATGACGGCTCGGC
CGAGAGGCCTTACTTCATGTCTTCCACCCTCAAGAAACTCTTGAACAAGACCAACAAGAAGGCA
GCGGAGTCCTGAAGGCCCCGCGCTCCCCACCTCTCAAGGAGTCTCATGCCGCAGGGTGCTCAGT
AGCTGGGTCTGTTCCCCCAGCCCCTTGGGCTCACCCGAAGTCCTATCACTGCCGCTTTGCCCCT
CCCCATGAGCCAGATCCCACCAGTTTCTGGACGTGGAGAGTCTGGGGCATCTCCTTCTTATGCC
AAGGGGCGCTTGGAGTTTTCATGGCTGCCCCTCCAGACTGCGAGAAACAAGTAAAAACCCATTG
GGGCCTCTTGATGTCTGGGATGGCACGTGGCCCGACCTCCGCAAGCTCCCTCATGCTTCCTGTC
CCCCGCTTACACGACAACGGGCCAGACCACAGGAAGGACGGTGTTTGTGTCTGAGGGAGCTGCT
GGCCACAGTGAACACCCACGTTTATTCCTGCCTGCTCCGGCCAGGACTGAACCCCTTCTCCACA
CCTGAACAGTTGGCTCAAGGGCCACCAGAAGCATTTCTTTATTATTATTATTTTTTAACCTGGA
CATGCATTAAAGGGTCTATTAGCTTTCTTTCCGTCTGTCTCAACAGCTGAGATGGGGCCGCCAA
GGAGTGCCTTCCTTTTGCTCCCTCCTAGCTGGGAGTGACTGGGGTGGGAGTGTGTGTGCCCAGG
TGGGGGTGTCTCCTGGCTGGGAAGGAGGGAAAGGGAGGGAGAGTTTTGCGGGGGTTGGCAGTGG
AGAGCGGGCTGGAGAGGAGATGGCTAATAGCTGTTTAATGGAAACCTGCTGGGCTGGAGGGAGT
TAGGCTGAATTTCCCGACTTCCTCTGCCAGTTATTGACACAGCTCTCTTTGTAAGAGAGGAAAG
AAACTAAACCCACCCAAGGGATGATTGCAGGGGGAGAGGTGGAGGGCAGATGCCCTGGGCAAAC
CGGGCCCCTCTGCCCACACACCTCACTTGATCCTTTTGCCAAACTTGTCAAACTCAGGGGAACT
GGCTTCCCAGTTGCCCCTTTGCCATATTCCAAGTCCCCCTCAGACTTCATGTCTCTGCTCATCA
GCACTGTCCCAGGATCCTGGAGAGGGAGAACCCCTGGCCCCAGGGGAAAGAGGGGGGGTCTCCC
GTTTCCTGTGCCTGCACCAGCCCTGCCCCCATTGCGTCTGCACACCCCTGCGTGTAACTGCATT
CCAACCACTAATAAAGTGCCTATTGTACAGGTC

hide sequence

RefSeq Acc Id:

XM_008961840 ⟹ XP_008960088

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	15,520,900 - 15,563,477 (+)	NCBI
NHGRI_mPanPan1	19	14,519,485 - 14,562,069 (+)	NCBI
Mhudiblu_PPA_v0	19	10,154,320 - 10,196,898 (+)	NCBI
PanPan1.1	19	10,815,825 - 10,857,693 (+)	NCBI

Sequence:

show sequence

AAACGGAGCCTACGGAACGCCACAGAAGTATGATCCCACTTTCAAAGGACCCATTTACAATAGG
GGCTGCACGGATGTCATATGCTGTGTGTTCCTGCTCCTGGCCATTGTGGGCTACGTGGCTGTAG
GCATCATAGCCTGGACTCATGGAGACCCTCGAAAGGTGATCTACCCCACTGATAGCCGGGGCGA
GTTCTGCGGGCAGAAGGGCACAAAAAACGAGAACAAACCCTATCTGTTTTATTTCAACATTGTG
AAATGTGCCAGCCCCCTGGTTCTGCTGGAATTCCAATGTCCCACCCCCCAGATCTGCGTGGAAA
AATGCCCCGACCGCTACCTCACGTACCTGAATGCTCGCAGCTCCCGGGACTTTGAGTACTATAA
GCAGTTCTGTGTTCCTGGCTTCAAGAACAATAAAGGAGTGGCTGAGGTGCTTCGAGATGGTGAC
TGCCCTGCTGTCCTCATCCCCAGCAAACCCTTGGCCCGGAGATGCTTCCCCGCTATCCACGCCT
ACAAGGGTGTCCTGATGGTGGGCAATGAGACGACCTATGAGGATGGGCATGGCTCCCGGAAAAA
CATCACAGACCTGGTGGAGGGCGCCAAGAAAGCCAATGGAGTCCTAGAGGCGCGGCAACTCGCC
ATGCGCATATTTGAAGACTACACCGTCTCTTGGTACTGGATTATCATAGGCCTGGTCATTGCCA
TGGCGATGAGCCTCCTGTTCATCATCCTGCTTCGCTTCCTGGCTGGTATTATGGTCTGGGTGAT
GATCATCATGGTGATTCTGGTGCTGGGCTACGGAATATTTCACTGCTACATGGAGTACTCCCGA
CTGCGTGGTGAGGCCGGCTCTGATGTCTCTTTGGTGGACCTCGGCTTTCAGACGGATTTCCGGG
TGTACCTGCACTTACGGCAGACCTGGTTGGCCTTTATGATCATTCTGAGTATCCTTGAAGTCAT
TATCATCTTGCTGCTCATCTTTCTCCGGAAGAGAATTCTCATCGCGATTGCACTCATCAAAGAA
GCCAGCAGGGCTGTGGGATACGTCATGTGCTCCTTGCTCTACCCACTGGTCACCTTCTTCTTGC
TGTGCCTCTGCATCGCCTACTGGGCCAGCACTGCTGTCTTCCTGTCCACTTCCAACGAAGCGGT
CTATAAGATCTTTGATGACAGCCCCTGCCCATTTACTGCGAAAACCTGCAACCCAGAGACCTTC
CCCTCCTCCAATGAGTCCCGCCAATGCCCCAATGCCCGTTGCCAGTTCGCCTTCTACGGTGGTG
AGTCGGGCTACCACCGGGCCCTGCTGGGCCTGCAGATCTTCAATGCCTTCATGTTCTTCTGGTT
GGCCAACTTCGTGCTGGCGCTGGGCCAGGTCACGCTGGCCGGGGCCTTTGCCTCCTACTACTGG
GCCCTGCGCAAGCCGGACGACCTGCCGGCCTTCCCGCTCTTCTCTGCCTTTGGCCGGGCGCTCA
GGTACCACACAGGCTCCCTGGCCTTTGGCGCGCTCATCCTGGCCATTGTGCAGATCATCCGTGT
GATACTCGAGTACCTGGATCAGCGGCTGAAAGCTGCAGAGAACAAGTTTGCCAAGTGCCTCATG
ACCTGTCTCAAATGCTGCTTCTGGTGCCTGGAGAAGTTCATCAAATTCCTCAATAGGAATGCCT
ACATCATGATTGCCATCTACGGCACCAATTTCTGCACCTCGGCCAGGAATGCCTTCTTCCTGCT
CATGAGAAACATCATCAGAGTGGCTGTCCTGGATAAAGTTACTGACTTCCTCTTCCTGTTGGGC
AAACTTCTGATCGTTGGTAGTGTGGGGATCCTGGCTTTCTTCTTCTTCACCCACCGTATCAGGA
TCGTGCAGGATACAGCACCACCCCTCAATTATTACTGGGTTCCTATACTGACGGTGATCGTTGG
CTCCTACTTGATTGCACACGGTTTCTTCAGCGTCTATGGCATGTGTGTGGACACGCTGTTCCTC
TGCTTCTTGGAGGACCTGGAGAGGAATGACGGCTCGGCCGAGAGGCCTTACTTCATGTCTTCCA
CCCTCAAGAAACTCTTGAACAAGACCAACAAGAAGGCAGCGGAGTCCTGAAGGCCCCGCGCTCC
CCACCTCTCAAGGAGTCTCATGCCGCAGGGTGCTCAGTAGCTGGGTCTGTTCCCCCAGCCCCTT
GGGCTCACCCGAAGTCCTATCACTGCCGCTTTGCCCCTCCCCATGAGCCAGATCCCACCAGTTT
CTGGACGTGGAGAGTCTGGGGCATCTCCTTCTTATGCCAAGGGGCGCTTGGAGTTTTCATGGCT
GCCCCTCCAGACTGCGAGAAACAAGTAAAAACCCATTGGGGCCTCTTGATGTCTGGGATGGCAC
GTGGCCCGACCTCCGCAAGCTCCCTCATGCTTCCTGTCCCCCGCTTACACGACAACGGGCCAGA
CCACAGGAAGGACGGTGTTTGTGTCTGAGGGAGCTGCTGGCCACAGTGAACACCCACGTTTATT
CCTGCCTGCTCCGGCCAGGACTGAACCCCTTCTCCACACCTGAACAGTTGGCTCAAGGGCCACC
AGAAGCATTTCTTTATTATTATTATTTTTTAACCTGGACATGCATTAAAGGGTCTATTAGCTTT
CTTTCCGTCTGTCTCAACAGCTGAGATGGGGCCGCCAAGGAGTGCCTTCCTTTTGCTCCCTCCT
AGCTGGGAGTGACTGGGGTGGGAGTGTGTGTGCCCAGGTGGGGGTGTCTCCTGGCTGGGAAGGA
GGGAAAGGGAGGGAGAGTTTTGCGGGGGTTGGCAGTGGAGAGCGGGCTGGAGAGGAGATGGCTA
ATAGCTGTTTAATGGAAACCTGCTGGGCTGGAGGGAGTTAGGCTGAATTTCCCGACTTCCTCTG
CCAGTTATTGACACAGCTCTCTTTGTAAGAGAGGAAAGAAACTAAACCCACCCAAGGGATGATT
GCAGGGGGAGAGGTGGAGGGCAGATGCCCTGGGCAAACCGGGCCCCTCTGCCCACACACCTCAC
TTGATCCTTTTGCCAAACTTGTCAAACTCAGGGGAACTGGCTTCCCAGTTGCCCCTTTGCCATA
TTCCAAGTCCCCCTCAGACTTCATGTCTCTGCTCATCAGCACTGTCCCAGGATCCTGGAGAGGG
AGAACCCCTGGCCCCAGGGGAAAGAGGGGGGGTCTCCCGTTTCCTGTGCCTGCACCAGCCCTGC
CCCCATTGCGTCTGCACACCCCTGCGTGTAACTGCATTCCAACCACTAATAAAGTGCCTATTGT
ACAGGTC

hide sequence

RefSeq Acc Id:

XM_063599871 ⟹ XP_063455941

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	15,520,898 - 15,563,477 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003809628	(Get FASTA)	NCBI Sequence Viewer
	XP_008960086	(Get FASTA)	NCBI Sequence Viewer
	XP_008960088	(Get FASTA)	NCBI Sequence Viewer
	XP_063455941	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000033472.1
	ENSPPAP00000033475.1
	ENSPPAP00000033478.1
	ENSPPAP00000033483.1

RefSeq Acc Id:	XP_008960088 ⟸ XM_008961840
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9BUX0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGNETTYEDGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSL LFIILLRFLAGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHL RQTWLAFMIILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLVTFFLLCLCI AYWASTAVFLSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESRQCPNARCQFAFYGGESGYH RALLGLQIFNAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPLFSAFGRALRYHTG SLAFGALILAIVQIIRVILEYLDQRLKAAENKFAKCLMTCLKCCFWCLEKFIKFLNRNAYIMIA IYGTNFCTSARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDT APPLNYYWVPILTVIVGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKL LNKTNKKAAES hide sequence

RefSeq Acc Id:	XP_008960086 ⟸ XM_008961838
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9BYB4 (UniProtKB/TrEMBL), A0A2R9BUX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDERPHYYGKHGTPQKYDPTFKGPIYNRGCTDVICCVFLLLAIVGYVAVGIIAWTHGDPRKVI YPTDSRGEFCGQKGTKNENKPYLFYFNIVKCASPLVLLEFQCPTPQICVEKCPDRYLTYLNARS SRDFEYYKQFCVPGFKNNKGVAEVLRDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYE DGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFL AGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMI ILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLVTFFLLCLCIAYWASTAVF LSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESRQCPNARCQFAFYGGESGYHRALLGLQIF NAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPLFSAFGRALRYHTGSLAFGALIL AIVQIIRVILEYLDQRLKAAENKFAKCLMTCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTS ARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWV PILTVIVGSYLIAHGFFSVYGMCVDTLFLCFCEDLERNDGSQERPYFMSPELRDILLKGSAEEG KRAEAEE hide sequence

RefSeq Acc Id:	XP_003809628 ⟸ XM_003809580
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9BUX2 (UniProtKB/TrEMBL), A0A2R9BUX0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDERPHYYGKHGTPQKYDPTFKGPIYNRGCTDVICCVFLLLAIVGYVAVGIIAWTHGDPRKVI YPTDSRGEFCGQKGTKNENKPYLFYFNIVKCASPLVLLEFQCPTPQICVEKCPDRYLTYLNARS SRDFEYYKQFCVPGFKNNKGVAEVLRDGDCPAVLIPSKPLARRCFPAIHAYKGVLMVGNETTYE DGHGSRKNITDLVEGAKKANGVLEARQLAMRIFEDYTVSWYWIIIGLVIAMAMSLLFIILLRFL AGIMVWVMIIMVILVLGYGIFHCYMEYSRLRGEAGSDVSLVDLGFQTDFRVYLHLRQTWLAFMI ILSILEVIIILLLIFLRKRILIAIALIKEASRAVGYVMCSLLYPLVTFFLLCLCIAYWASTAVF LSTSNEAVYKIFDDSPCPFTAKTCNPETFPSSNESRQCPNARCQFAFYGGESGYHRALLGLQIF NAFMFFWLANFVLALGQVTLAGAFASYYWALRKPDDLPAFPLFSAFGRALRYHTGSLAFGALIL AIVQIIRVILEYLDQRLKAAENKFAKCLMTCLKCCFWCLEKFIKFLNRNAYIMIAIYGTNFCTS ARNAFFLLMRNIIRVAVLDKVTDFLFLLGKLLIVGSVGILAFFFFTHRIRIVQDTAPPLNYYWV PILTVIVGSYLIAHGFFSVYGMCVDTLFLCFLEDLERNDGSAERPYFMSSTLKKLLNKTNKKAA ES hide sequence

Ensembl Acc Id:

ENSPPAP00000033472 ⟸ ENSPPAT00000056348

Ensembl Acc Id:

ENSPPAP00000033483 ⟸ ENSPPAT00000056359

Ensembl Acc Id:

ENSPPAP00000033475 ⟸ ENSPPAT00000056351

Ensembl Acc Id:

ENSPPAP00000033478 ⟸ ENSPPAT00000056354

RefSeq Acc Id:	XP_063455941 ⟸ XM_063599871
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9BUX8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000039593	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000056348.1	UniProtKB/TrEMBL
	ENSPPAT00000056351.1	UniProtKB/TrEMBL
	ENSPPAT00000056354.1	UniProtKB/TrEMBL
	ENSPPAT00000056359.1	UniProtKB/TrEMBL
InterPro	Choline_transptr-like	UniProtKB/TrEMBL
KEGG Report	pps:100976174	UniProtKB/TrEMBL
NCBI Gene	SLC44A2	ENTREZGENE
PANTHER	CHOLINE TRANSPORTER-LIKE PROTEIN 2	UniProtKB/TrEMBL
	PTHR12385	UniProtKB/TrEMBL
Pfam	Choline_transpo	UniProtKB/TrEMBL
UniProt	A0A2R9BUX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BUX2	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BUX8	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9BYB4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-11-07	SLC44A2	solute carrier family 44 member 2 (CTL2 blood group)	SLC44A2	solute carrier family 44 member 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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