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Gene: Col4a2 (collagen type IV alpha 2 chain) Rattus norvegicus
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Symbol: Col4a2
Name: collagen type IV alpha 2 chain
Description: Predicted to have extracellular matrix structural constituent. Involved in aging and response to activity. Predicted to localize to the collagen type IV trimer and extracellular space. Human ortholog(s) of this gene implicated in atherosclerosis and porencephaly. Orthologous to human COL4A2 (collagen type IV alpha 2 chain); PARTICIPATES IN cell-extracellular matrix signaling pathway; Entamoebiasis pathway; small cell lung carcinoma pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; ammonium chloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: alpha-2 collagen type IV; collagen alpha-2(IV) chain; collagen, type IV, alpha 2; LOC306628; LOW QUALITY PROTEIN: collagen alpha-2(IV) chain; procollagen, type IV, alpha 2
Orthologs:
Homo sapiens (human) : COL4A2 (collagen type IV alpha 2 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col4a2 (collagen, type IV, alpha 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col4a2 (collagen type IV alpha 2 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL4A2 (collagen type IV alpha 2 chain)
Canis lupus familiaris (dog) : COL4A2 (collagen type IV alpha 2 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col4a2 (collagen type IV alpha 2 chain)
Sus scrofa (pig) : COL4A2 (collagen type IV alpha 2 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01683,386,388 - 83,522,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1683,387,364 - 83,438,561 (-)Ensembl
Rnor_5.01682,852,230 - 82,987,790 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,899,206 - 83,045,102 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11682,871,435 - 83,006,872 (-)NCBI
Celera1675,846,004 - 75,981,238 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col4a2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308085
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.