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Gene: Cfap70 (cilia and flagella associated protein 70) Rattus norvegicus

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Symbol:

Cfap70

Name:

cilia and flagella associated protein 70

RGD ID:

1307577

Description:

Predicted to be involved in cilium assembly and cilium movement. Predicted to act upstream of or within several processes, including maintenance of cell number; single fertilization; and spermatid development. Predicted to be located in axoneme; ciliary basal body; and sperm flagellum. Predicted to be part of outer dynein arm. Predicted to be active in cytoplasm; manchette; and motile cilium. Human ortholog(s) of this gene implicated in spermatogenic failure 41. Orthologous to human CFAP70 (cilia and flagella associated protein 70); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cilia- and flagella-associated protein 70; LOC361006; tetratricopeptide repeat domain 18; tetratricopeptide repeat protein 18; Ttc18

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,901,544 - 3,967,224 (+)	NCBI		GRCr8
mRatBN7.2	15	3,852,381 - 3,918,036 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,852,509 - 3,918,014 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	3,862,663 - 3,928,143 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,249,087 - 5,314,568 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,861,481 - 3,926,964 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,285,049 - 4,350,707 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,285,052 - 4,350,714 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	8,386,331 - 8,452,205 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	4,079,765 - 4,112,202 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	4,083,325 - 4,148,781 (+)	NCBI
Celera	15	677,033 - 742,609 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap70	Rat	spermatogenic failure 41		ISO	CFAP70 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spermatogenic failure 41	ClinVar	PMID:31621862

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap70	Rat	oligoasthenoteratozoospermia		ISS	Cfap70 (Mus musculus)	13592920		MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap70	Rat	spermatogenic failure 41		ISO	CFAP70 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap70	Rat	17alpha-ethynylestradiol	decreases expression	EXP		6480464	Ethinyl Estradiol results in decreased expression of CFAP70 mRNA	CTD	PMID:29097150
Cfap70	Rat	17beta-estradiol	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Estradiol results in decreased expression of CFAP70 mRNA	CTD	PMID:31614463
Cfap70	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of CFAP70 mRNA	CTD	PMID:22298810
Cfap70	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of CFAP70 mRNA	CTD	PMID:33956508
Cfap70	Rat	3,4-methylenedioxymethamphetamine	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of CFAP70 mRNA	CTD	PMID:20188158
Cfap70	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Cfap70 (Mus musculus)	6480464	bisphenol S results in increased expression of CFAP70 mRNA	CTD	PMID:30951980
Cfap70	Rat	aflatoxin B1	affects expression	ISO	CFAP70 (Homo sapiens)	6480464	Aflatoxin B1 affects the expression of CFAP70 protein	CTD	PMID:20106945
Cfap70	Rat	aflatoxin B1	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of CFAP70 mRNA	CTD	PMID:22100608
Cfap70	Rat	aristolochic acid A	increases expression	ISO	CFAP70 (Homo sapiens)	6480464	aristolochic acid I results in increased expression of CFAP70 mRNA	CTD	PMID:33212167
Cfap70	Rat	avobenzone	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	avobenzone results in decreased expression of CFAP70 mRNA	CTD	PMID:31016361
Cfap70	Rat	benzo[a]pyrene	affects methylation	ISO	CFAP70 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of CFAP70 intron	CTD	PMID:30157460
Cfap70	Rat	benzo[a]pyrene	increases methylation	ISO	CFAP70 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of CFAP70 5' UTR	CTD	PMID:27901495
Cfap70	Rat	benzo[a]pyrene	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of CFAP70 mRNA	CTD	PMID:32234424
Cfap70	Rat	benzo[e]pyrene	increases methylation	ISO	CFAP70 (Homo sapiens)	6480464	benzo(e)pyrene results in increased methylation of CFAP70 intron	CTD	PMID:30157460
Cfap70	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	Cfap70 (Mus musculus)	6480464	Diethylhexyl Phthalate results in increased expression of CFAP70 mRNA	CTD	PMID:34319233
Cfap70	Rat	bisphenol A	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	bisphenol A results in decreased expression of CFAP70 mRNA	CTD	PMID:26063408
Cfap70	Rat	bisphenol A	increases methylation	ISO	CFAP70 (Homo sapiens)	6480464	bisphenol A results in increased methylation of CFAP70 gene	CTD	PMID:31601247
Cfap70	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CFAP70 mRNA	CTD	PMID:29097150 and PMID:30816183
Cfap70	Rat	bisphenol F	increases expression	ISO	Cfap70 (Mus musculus)	6480464	bisphenol F results in increased expression of CFAP70 mRNA	CTD	PMID:30951980
Cfap70	Rat	butanal	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	butyraldehyde results in decreased expression of CFAP70 mRNA	CTD	PMID:26079696
Cfap70	Rat	butane-2,3-dione	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Diacetyl results in decreased expression of CFAP70 mRNA	CTD	PMID:30710127
Cfap70	Rat	cadmium dichloride	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of CFAP70 mRNA	CTD	PMID:38382870
Cfap70	Rat	carbon nanotube	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Cfap70	Rat	chlorpyrifos	increases expression	ISO	Cfap70 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of CFAP70 mRNA	CTD	PMID:37019170
Cfap70	Rat	copper atom	multiple interactions	ISO	CFAP70 (Homo sapiens)	6480464	[NSC 689534 binds to Copper] which results in increased expression of CFAP70 mRNA	CTD	PMID:20971185
Cfap70	Rat	copper(0)	multiple interactions	ISO	CFAP70 (Homo sapiens)	6480464	[NSC 689534 binds to Copper] which results in increased expression of CFAP70 mRNA	CTD	PMID:20971185
Cfap70	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of CFAP70 mRNA	CTD	PMID:26577399
Cfap70	Rat	cyclosporin A	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of CFAP70 mRNA	CTD	PMID:20106945
Cfap70	Rat	Dibutyl phosphate	affects expression	ISO	CFAP70 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of CFAP70 mRNA	CTD	PMID:37042841
Cfap70	Rat	diquat	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	Diquat results in decreased expression of CFAP70 mRNA	CTD	PMID:36851058
Cfap70	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of CFAP70 mRNA	CTD	PMID:29391264
Cfap70	Rat	genistein	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	Genistein results in decreased expression of CFAP70 mRNA	CTD	PMID:32186404
Cfap70	Rat	hydroquinone O-beta-D-glucopyranoside	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Arbutin results in decreased expression of CFAP70 mRNA	CTD	PMID:17103032
Cfap70	Rat	lead diacetate	increases expression	EXP		6480464	lead acetate results in increased expression of CFAP70 mRNA	CTD	PMID:22641619
Cfap70	Rat	lipopolysaccharide	multiple interactions	ISO	CFAP70 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of CFAP70 mRNA	CTD	PMID:35811015
Cfap70	Rat	methapyrilene	increases methylation	ISO	CFAP70 (Homo sapiens)	6480464	Methapyrilene results in increased methylation of CFAP70 intron	CTD	PMID:30157460
Cfap70	Rat	methylmercury chloride	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of CFAP70 mRNA	CTD	PMID:28001369
Cfap70	Rat	N-Nitrosopyrrolidine	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in decreased expression of CFAP70 mRNA	CTD	PMID:32234424
Cfap70	Rat	nickel atom	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	Nickel results in decreased expression of CFAP70 mRNA	CTD	PMID:24768652 and PMID:25583101
Cfap70	Rat	niclosamide	increases expression	ISO	CFAP70 (Homo sapiens)	6480464	Niclosamide results in increased expression of CFAP70 mRNA	CTD	PMID:36318118
Cfap70	Rat	pentane-2,3-dione	decreases expression	ISO	CFAP70 (Homo sapiens)	6480464	2 and 3-pentanedione results in decreased expression of CFAP70 mRNA	CTD	PMID:30710127
Cfap70	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of CFAP70 mRNA	CTD	PMID:37995155
Cfap70	Rat	propanal	increases expression	ISO	CFAP70 (Homo sapiens)	6480464	propionaldehyde results in increased expression of CFAP70 mRNA	CTD	PMID:26079696
Cfap70	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	CFAP70 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of CFAP70 mRNA	CTD	PMID:35811015
Cfap70	Rat	S-(1,2-dichlorovinyl)-L-cysteine	increases expression	ISO	CFAP70 (Homo sapiens)	6480464	S-(1 and 2-dichlorovinyl)cysteine results in increased expression of CFAP70 mRNA	CTD	PMID:35811015
Cfap70	Rat	sodium arsenite	increases expression	ISO	CFAP70 (Homo sapiens)	6480464	sodium arsenite results in increased expression of CFAP70 mRNA	CTD	PMID:38568856
Cfap70	Rat	sodium arsenite	increases expression	ISO	Cfap70 (Mus musculus)	6480464	sodium arsenite results in increased expression of CFAP70 mRNA	CTD	PMID:37682722
Cfap70	Rat	sunitinib	increases expression	ISO	CFAP70 (Homo sapiens)	6480464	Sunitinib results in increased expression of CFAP70 mRNA	CTD	PMID:31533062
Cfap70	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of CFAP70 mRNA	CTD	PMID:34492290
Cfap70	Rat	titanium dioxide	decreases expression	ISO	Cfap70 (Mus musculus)	6480464	titanium dioxide results in decreased expression of CFAP70 mRNA	CTD	PMID:23557971
Cfap70	Rat	titanium dioxide	increases expression	ISO	Cfap70 (Mus musculus)	6480464	titanium dioxide results in increased expression of CFAP70 mRNA	CTD	PMID:35295148
Cfap70	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of CFAP70 mRNA	CTD	PMID:33387578

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap70	Rat	cell morphogenesis	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	cell morphogenesis	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	cilium assembly	involved_in	IBA	MGI:1923920 and PANTHER:PTN002349052	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cfap70	Rat	cilium assembly	involved_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	cilium assembly	involved_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:30158508	RGD	PMID:30158508
Cfap70	Rat	cilium movement	involved_in	IBA	MGI:1923920 and PANTHER:PTN002349052	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cfap70	Rat	cilium movement	involved_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	cilium movement	involved_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:30158508	RGD	PMID:30158508
Cfap70	Rat	cilium organization	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	cilium organization	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	flagellated sperm motility	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	flagellated sperm motility	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	gene expression	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	gene expression	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	homeostasis of number of cells	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	homeostasis of number of cells	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	maintenance of cell number	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	maintenance of cell number	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	manchette assembly	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	manchette assembly	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	protein localization	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	protein localization	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	protein-containing complex assembly	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	protein-containing complex assembly	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	single fertilization	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	single fertilization	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	sperm flagellum assembly	acts_upstream_of_or_within	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	sperm flagellum assembly	acts_upstream_of_or_within	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap70	Rat	axoneme	located_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:30158508	RGD	PMID:30158508
Cfap70	Rat	axoneme	located_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	ciliary basal body	located_in	ISO	CFAP70 (Homo sapiens)	1624291	PMID:31621862	RGD	PMID:31621862
Cfap70	Rat	cytoplasm	is_active_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	cytoplasm	is_active_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	manchette	is_active_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:37352829	RGD	PMID:37352829
Cfap70	Rat	manchette	is_active_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	motile cilium	located_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:30158508	RGD	PMID:30158508
Cfap70	Rat	motile cilium	located_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	motile cilium	is_active_in	IBA	MGI:1923920 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cfap70	Rat	outer dynein arm	part_of	ISO	CFAP70 (Homo sapiens)	1624291	PMID:31621862	RGD	PMID:31621862
Cfap70	Rat	sperm flagellum	located_in	ISO	Cfap70 (Mus musculus)	1624291	PMID:30158508	RGD	PMID:30158508
Cfap70	Rat	sperm flagellum	located_in	IEA	UniProtKB:D3YVL2 and ensembl:ENSMUSP00000056869	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap70	Rat	sperm flagellum	located_in	ISO	CFAP70 (Homo sapiens)	1624291	PMID:31621862 and PMID:37934199	RGD	PMID:31621862 and PMID:37934199

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:19056867	PMID:30158508	PMID:31621862

Cfap70
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,901,544 - 3,967,224 (+)	NCBI		GRCr8
mRatBN7.2	15	3,852,381 - 3,918,036 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,852,509 - 3,918,014 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	3,862,663 - 3,928,143 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,249,087 - 5,314,568 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,861,481 - 3,926,964 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,285,049 - 4,350,707 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,285,052 - 4,350,714 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	8,386,331 - 8,452,205 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	4,079,765 - 4,112,202 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	4,083,325 - 4,148,781 (+)	NCBI
Celera	15	677,033 - 742,609 (-)	NCBI		Celera
Cytogenetic Map	15	p16	NCBI

CFAP70
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,253,762 - 73,362,979 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,253,762 - 73,358,864 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	75,013,520 - 75,118,622 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	74,683,526 - 74,788,618 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	74,683,529 - 74,788,618	NCBI
Celera	10	68,299,139 - 68,404,237 (-)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	69,007,376 - 69,112,474 (-)	NCBI		HuRef
CHM1_1	10	75,295,233 - 75,400,378 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,125,143 - 74,236,682 (-)	NCBI		T2T-CHM13v2.0

Cfap70
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,444,258 - 20,502,332 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,444,261 - 20,502,294 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	20,394,190 - 20,452,264 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,394,193 - 20,452,226 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	21,213,412 - 21,271,447 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,182,745 - 19,240,774 (-)	NCBI		MGSCv36	mm8
Celera	14	16,775,029 - 16,833,441 (-)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.53	NCBI

Cfap70
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955437	18,424,568 - 18,480,327 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFAP70
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,429,689 - 85,535,071 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,435,012 - 85,540,394 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	69,801,407 - 69,906,688 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	72,260,229 - 72,364,848 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	72,260,229 - 72,360,714 (-)	Ensembl	panpan1.1		panPan2

CFAP70
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	23,830,335 - 23,926,922 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	23,830,336 - 23,924,350 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	23,968,485 - 24,064,708 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	24,111,719 - 24,207,085 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	24,111,720 - 24,204,484 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	24,009,301 - 24,104,612 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,208,588 - 24,305,064 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,564,592 - 24,659,955 (-)	NCBI		UU_Cfam_GSD_1.0

Cfap70
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	57,188,073 - 57,292,057 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936521	5,680,846 - 5,785,818 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP70
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	76,075,275 - 76,198,778 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	76,075,269 - 76,199,898 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,200,158 - 82,324,346 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP70
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	57,917,170 - 58,019,298 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	57,930,772 - 58,019,372 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	18,499,595 - 18,603,712 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap70
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	6,923,632 - 6,973,670 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	6,923,431 - 6,977,007 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cfap70
238 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	129
Count of miRNA genes:	84
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000009332, ENSRNOT00000035303, ENSRNOT00000035345
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2266368	22711984	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1058250	14481294	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	29912054	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001108370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003751430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003752779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005493747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ150649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035345 ⟹ ENSRNOP00000030551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,852,509 - 3,918,014 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,285,052 - 4,350,714 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111064 ⟹ ENSRNOP00000095268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,852,509 - 3,918,014 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114948 ⟹ ENSRNOP00000091914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,852,509 - 3,918,014 (+)	Ensembl

RefSeq Acc Id:

NM_001108370 ⟹ NP_001101840

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,733 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,852,509 - 3,918,036 (+)	NCBI

RefSeq Acc Id:

XM_006251665 ⟹ XP_006251727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,544 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,852,389 - 3,918,036 (+)	NCBI
Rnor_6.0	15	4,285,049 - 4,350,707 (+)	NCBI
Rnor_5.0	15	8,386,331 - 8,452,205 (+)	NCBI

Sequence:

show sequence

CGAGAGTTAGCTGGTTGCTATAGTTACAGAAAACAGCCGGCGTCTGTCTCAGGCCAGGTTGAAATTCTCGCTCAGCCCAAGATCCTGCTTCATCCAGAGCCGGGTCCAGTCCCATCTCCTATCCCCAA
GTCGATGGTTGTGGCCCCCCTCTGAGCCTGTGACTAGGAACGGATGCCTCGTTGATCGCATGAGCAAGAGTTGGGTACTTGTGCAAGGTCACAGTTACTCAGTAGGAAAGTCGTCAATCTCCACGTCT
GGGACTGTGGATCTGGTTCAGTGAAGTGTTTCCACTGCGTGCGTGGGGCGCAAGGCCAAAGAAGACCAGAGAGACTTGACCAAGTGCTGACATGGACCAGCCGTCCAGCGCAGTGAGAACCGTGAACA
TTACTGTGACAAATGGATATGACTTGAAAGGCTTCAAAGGAGACACCCCAGTTACTTTTGTCCGTGCAGAATTCAATCAGGCAGTTCTCGGAGACTCTTCAAAAATCACTGTCTCTCCAGAAGGAACT
GCAAAATACAATTTTACTTGCAACATTGACCTCAACCCAGATGGGGGAGTTACTGTAGATGACCTCGCCCACAAACCGTTATTCCTAACGGTGACTGAAGTTTTACCAAGGGAAAAGAAACAGAAAGA
TGAGAAGACCTTAACTCTTGGCCAGGCTGTGGTGGATCTTCTTCCTTTACTAGAAGGAGAGGAGTCATTTGAAACGACGGTCCCATTACACCCCGTGCAGGGGTCACCCTTGGAAACTACTTTGCCAG
GCTCTAAGCCATGCAGTCTTGATGTGAAGGTATTTGTGACAGAGCCCTTACTGACCCCAGCCCAGGTCGCAGCAAGCAATCTCCTGAAGGTCACGCTGGAGGCGGCCTATTCCGTGCCTGAGTCCTTC
ATGCCAGTCGGGCCTCAGCAGAACTACATGGTTGGTCTGCAAGTCCCGTCGGTCGGAGAGAAGGACTACTCTATGATATTCAAGAACGGGAATCTGAAGCTCGGCGGGGAAAGAGAGCCTGTTCCCAG
GCCTAAAAAATGGCCTATCGCTAACATTCTTGCTCCTGGAGCTAATAACATCCCTGACGAGTTCATTGTTGGGGGGCCCTATGAGGAAGAGGAAGGAGAACTCAACCACCCTGAGGACAGAGAATTAA
GGAACCAAGCCGAATGCCTGAAGAAGAGGATTGTCTGGGACCTGGAAAGTCGCTGCTTCCTCCATCCCTCTGCTGTTGCAAGTTTTCAGAAGCGAATTGCTGATTGCCGACTCTGGCCCGTGGAGATC
ACAAGAGTGCCTTTGATCGTTGTACCCAAAGCCAAGCCAGGCAAACTTGAGAAGATCGAAGATGAAAACCAGCTGTCCTTTCACGGCGTGGCCTACGTCAACATGGTCCCACTCCTGTATCCCGGAGT
GAAGAGGATACGAGGGGCTTTTCATGTGTACCCCTACCTGGACGGGACAGTCTTCGAGAAGACCAAGTGCTTGTTCAGCTTGTTCAGGGACACTGGGCACCATTTGGTTCACAATAACAAAGCAGGAG
GACTTAACTCCCCGCTGTCCAAACCTCTCTCCAAGAATCTGAAAGAAGAGAGAACAGGGAAAGACAAGGACATAGACGGACGGCCTCGGCTGGGAGAGTTGCAAGCACCGAGTATAAAATCGCAGAGC
TCGGACACCCCTCTGGAAAGCGAAGCGCCTCTAAGCCACAATCTCGAAGGACAGCAATACGTGGAGGCGGGGACGTACATCGTCCTGGAGATCCAGCTGGACAAAGCCCTGGTACCAAAGCGGATGCC
GGAGGAACTGGCCAGAAGGGTCAAGGATATGATACCCCCGAGGCCACCTCTCACCCGTCGGACAGGGGGAGCTCAGAAGGCGGTGAGTGACTACCACTCGCAGATCAAGAGCATCTCTAGAGCCATTC
TGAATGAGTACCACCGCATGTTTGGGAAGCACCGGCCGAAAGAGGAGAGCGACATAGACAATGAGACCATGGAGGAGCAGAAATGCCAGCTCAACTATGAGCTCAATTGCTCTGGAAAGTACTTTGCT
TTCAAAGAACAGCTCAAGCACGCTGTGGTAAAGATCGTGAGAGAGAAATACTTGAAGACAACAGCATTCGAGAGCCAGGAGGAACTGCAGACGTTCATCAGTGAACTTTATGTGTTCTTGGTAGATCA
GATGCATGTGGCCCTGAACCAGGCCATGCCAGAAGACGCCCCAAGCAGCACCTCAACGATTCAGACGAGCAGTGAGCAGCTTCGGCTCTTCGCGTTCGAGGCAGAAGTCGACGAGAAGTTTGAAATGG
CAGCAGTGTATTATGAAGAGAGGTTGGTCCGGGAACCCCAGAACCTGGAAAACTGGCTGGATTATGGTTCTTTCTGCCTCCTCACTGAAGACAACATCAAAGCACAGGAGTGCTTCCGGAAAGCCCTT
TCTCTGAATGAGAGTCACGTTCACAGCCTGTTGCTGTGCGGTGTCCTGGCTGTCTTGTTGGAGAACTATGAGCAAGCAGAGATCTTCTTTGAGGATGCTACATGCTTGGAACCTACCAATGTCGTTGC
CTGGACTTTACTCGGACTGTTCTACGAGATTCAGAATAACGACATTCGGATGGAAATGGCGTTCCACGAGGCCTTCAAACAGCTCCAGGCACGAACCCTGCAGACAAAGCTGAAGAGCACGGCTACCG
TCCAGAACATTGAGGAAGGAGTGAAGACAGAGCCCAGCTTTGGCCCTTGGGGGATCACACAGGAGTCCTCCACAGCCATCAAGTCAGAAGGCCAAACAGGGATAAGGCCCAGGACCTCACACCCGCTG
AGTCCTCGCCCCACCGTGGAGCTGCATCCTCAACCCCAAGGACCAAACACTGCTTTGTCCAGTCTAGACGAGTTTTTGGAAGAATCATCTAAGGCGCAGTCTGACTCACAAGAGCCAATAATCACTGT
ACAACCTCTGGAGTCCTCCCTTACACAGAAGTCATCCAATGCCCTGCTAAAGGAGCTGACATCCAAAAAAGAAACATCAAAATGCCAAGATTCATCAGCCTTTTTCTCTCCTACCCACCAAGCTATTC
CCCAGCCCCCTGTGACGATCTTCATGGAGACCATTCGCTTCTTGATGAAGGTCAATGCTGTCCAGTTCGTGCACCGAGTGCTGGCACATGAGCTTCTGTGCCCTCAAGGAGGACCTAGTTGTGAGTAT
TATCTGGTTCTGGCCCAGACACACCTTCTCAAGAAGGACTTCGCCAAGACAGAGGAGTACCTGCAGCAGGCAGCACAGATGGACTACCTGAACCCCAACGTCTGGGGTGTGAAGGGCCATCTCTACTT
CCTGAGTGGAAACCATGCCGAGGCCAAAGAGTGCTACGAGAGAACTGTTAGCTTTGTGGTAGATGCTTCTGAGATGCACTTCATCTTCCTGCGCCTGGGACACATCTACCTGGAAGAGAAAGAGTATG
ATAACGCAAAGAGAACATACATGCAAGCCTGTAAGAGATCGCCTTCGTGCCTCACTTGGCTTGGACTAGGAATCGCCTGTTACCGGCTGGAGGAGCTCACTGAAGCTGAGGATGCTCTGTCTGAAGCC
AATGCATTGAATAACTGCAACGCGGAGGTGTGGGCCTATCTGGCTCTGGTCTGCCTGAAGGTTGGACGACAACTAGAAGCTGAGCAGGCTTATAAGTACACAGTAAAGCTGAAACTGAAAGACCAGGC
TCTGCTTGAAGAAATCCACAGTGTACAGGAAATGGTTGGCTTTGGAAATCCATCTTTCTGACGTTCTTACAAGTGGATATTTAATATAGAACCCCAAGCCTCTCTCCTTCCCAAATTGTCACCAGATG
AAACCCGCCCATCCCTCCCACCCTTTGTTTGTTGGCTGTTAGATCACATTAAAAAAACCCAAAAACTCAAAA

hide sequence

RefSeq Acc Id:

XM_006251666 ⟹ XP_006251728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,598 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,852,381 - 3,918,036 (+)	NCBI
Rnor_6.0	15	4,285,065 - 4,350,707 (+)	NCBI
Rnor_5.0	15	8,386,331 - 8,452,205 (+)	NCBI

Sequence:

show sequence

GCTATAGTTACAGAAAACAGCCGGCGTCTGTCTCAGGTAGGATAGTTATTCCCTTTCCGAGGCTATAGCTGTCACTCCCACTCCCCAGATCTTTTCTTCCAGGATTCATACCACTTTCCCTTCTGCTA
AGGCCAGGTTGAAATTCTCGCTCAGCCCAAGATCCTGCTTCATCCAGAGCCGGGTCCAGTCCCATCTCCTATCCCCAAGTCGATGGTTGTGGCCCCCCTCTGAGCCTGTGACTAGGAACGGATGCCTC
GTTGATCGCATGAGCAAGAGTTGGGTACTTGTGCAAGGTCACAGTTACTCAGTAGGAAAGTCGTCAATCTCCACGTCTGGGACTGTGGATCTGGTTCAGTGAAGTGTTTCCACTGCGTGCGTGGGGCG
CAAGGCCAAAGAAGACCAGAGAGACTTGACCAAGTGCTGACATGGACCAGCCGTCCAGCGCAGTGAGAACCGTGAACATTACTGTGACAAATGGATATGACTTGAAAGGCTTCAAAGGAGACACCCCA
GTTACTTTTGTCCGTGCAGAATTCAATCAGGCAGTTCTCGGAGACTCTTCAAAAATCACTGTCTCTCCAGAAGGAACTGCAAAATACAATTTTACTTGCAACATTGACCTCAACCCAGATGGGGGAGT
TACTGTAGATGACCTCGCCCACAAACCGTTATTCCTAACGGTGACTGAAGTTTTACCAAGGGAAAAGAAACAGAAAGATGAGAAGACCTTAACTCTTGGCCAGGCTGTGGTGGATCTTCTTCCTTTAC
TAGAAGGAGAGGAGTCATTTGAAACGACGGTCCCATTACACCCCGTGCAGGGGTCACCCTTGGAAACTACTTTGCCAGGCTCTAAGCCATGCAGTCTTGATGTGAAGGTATTTGTGACAGAGCCCTTA
CTGACCCCAGCCCAGGTCGCAGCAAGCAATCTCCTGAAGGTCACGCTGGAGGCGGCCTATTCCGTGCCTGAGTCCTTCATGCCAGTCGGGCCTCAGCAGAACTACATGGTTGGTCTGCAAGTCCCGTC
GGTCGGAGAGAAGGACTACTCTATGATATTCAAGAACGGGAATCTGAAGCTCGGCGGGGAAAGAGAGCCTGTTCCCAGGCCTAAAAAATGGCCTATCGCTAACATTCTTGCTCCTGGAGCTAATAACA
TCCCTGACGAGTTCATTGTTGGGGGGCCCTATGAGGAAGAGGAAGGAGAACTCAACCACCCTGAGGACAGAGAATTAAGGAACCAAGCCGAATGCCTGAAGAAGAGGATTGTCTGGGACCTGGAAAGT
CGCTGCTTCCTCCATCCCTCTGCTGTTGCAAGTTTTCAGAAGCGAATTGCTGATTGCCGACTCTGGCCCGTGGAGATCACAAGAGTGCCTTTGATCGTTGTACCCAAAGCCAAGCCAGGCAAACTTGA
GAAGATCGAAGATGAAAACCAGCTGTCCTTTCACGGCGTGGCCTACGTCAACATGGTCCCACTCCTGTATCCCGGAGTGAAGAGGATACGAGGGGCTTTTCATGTGTACCCCTACCTGGACGGGACAG
TCTTCGAGAAGACCAAGTGCTTGTTCAGCTTGTTCAGGGACACTGGGCACCATTTGGTTCACAATAACAAAGCAGGAGGACTTAACTCCCCGCTGTCCAAACCTCTCTCCAAGAATCTGAAAGAAGAG
AGAACAGGGAAAGACAAGGACATAGACGGACGGCCTCGGCTGGGAGAGTTGCAAGCACCGAGTATAAAATCGCAGAGCTCGGACACCCCTCTGGAAAGCGAAGCGCCTCTAAGCCACAATCTCGAAGG
ACAGCAATACGTGGAGGCGGGGACGTACATCGTCCTGGAGATCCAGCTGGACAAAGCCCTGGTACCAAAGCGGATGCCGGAGGAACTGGCCAGAAGGGTCAAGGATATGATACCCCCGAGGCCACCTC
TCACCCGTCGGACAGGGGGAGCTCAGAAGGCGGTGAGTGACTACCACTCGCAGATCAAGAGCATCTCTAGAGCCATTCTGAATGAGTACCACCGCATGTTTGGGAAGCACCGGCCGAAAGAGGAGAGC
GACATAGACAATGAGACCATGGAGGAGCAGAAATGCCAGCTCAACTATGAGCTCAATTGCTCTGGAAAGTACTTTGCTTTCAAAGAACAGCTCAAGCACGCTGTGGTAAAGATCGTGAGAGAGAAATA
CTTGAAGACAACAGCATTCGAGAGCCAGGAGGAACTGCAGACGTTCATCAGTGAACTTTATGTGTTCTTGGTAGATCAGATGCATGTGGCCCTGAACCAGGCCATGCCAGAAGACGCCCCAAGCAGCA
CCTCAACGATTCAGACGAGCAGTGAGCAGCTTCGGCTCTTCGCGTTCGAGGCAGAAGTCGACGAGAAGTTTGAAATGGCAGCAGTGTATTATGAAGAGAGGTTGGTCCGGGAACCCCAGAACCTGGAA
AACTGGCTGGATTATGGTTCTTTCTGCCTCCTCACTGAAGACAACATCAAAGCACAGGAGTGCTTCCGGAAAGCCCTTTCTCTGAATGAGAGTCACGTTCACAGCCTGTTGCTGTGCGGTGTCCTGGC
TGTCTTGTTGGAGAACTATGAGCAAGCAGAGATCTTCTTTGAGGATGCTACATGCTTGGAACCTACCAATGTCGTTGCCTGGACTTTACTCGGACTGTTCTACGAGATTCAGAATAACGACATTCGGA
TGGAAATGGCGTTCCACGAGGCCTTCAAACAGCTCCAGGCACGAACCCTGCAGACAAAGCTGAAGAGCACGGCTACCGTCCAGAACATTGAGGAAGGAGTGAAGACAGAGCCCAGCTTTGGCCCTTGG
GGGATCACACAGGAGTCCTCCACAGCCATCAAGTCAGAAGGCCAAACAGGGATAAGGCCCAGGACCTCACACCCGCTGAGTCCTCGCCCCACCGTGGAGCTGCATCCTCAACCCCAAGGACCAAACAC
TGCTTTGTCCAGTCTAGACGAGTTTTTGGAAGAATCATCTAAGGCGCAGTCTGACTCACAAGAGCCAATAATCACTGTACAACCTCTGGAGTCCTCCCTTACACAGAAGTCATCCAATGCCCTGCTAA
AGGAGCTGACATCCAAAAAAGCTATTCCCCAGCCCCCTGTGACGATCTTCATGGAGACCATTCGCTTCTTGATGAAGGTCAATGCTGTCCAGTTCGTGCACCGAGTGCTGGCACATGAGCTTCTGTGC
CCTCAAGGAGGACCTAGTTGTGAGTATTATCTGGTTCTGGCCCAGACACACCTTCTCAAGAAGGACTTCGCCAAGACAGAGGAGTACCTGCAGCAGGCAGCACAGATGGACTACCTGAACCCCAACGT
CTGGGGTGTGAAGGGCCATCTCTACTTCCTGAGTGGAAACCATGCCGAGGCCAAAGAGTGCTACGAGAGAACTGTTAGCTTTGTGGTAGATGCTTCTGAGATGCACTTCATCTTCCTGCGCCTGGGAC
ACATCTACCTGGAAGAGAAAGAGTATGATAACGCAAAGAGAACATACATGCAAGCCTGTAAGAGATCGCCTTCGTGCCTCACTTGGCTTGGACTAGGAATCGCCTGTTACCGGCTGGAGGAGCTCACT
GAAGCTGAGGATGCTCTGTCTGAAGCCAATGCATTGAATAACTGCAACGCGGAGGTGTGGGCCTATCTGGCTCTGGTCTGCCTGAAGGTTGGACGACAACTAGAAGCTGAGCAGGCTTATAAGTACAC
AGTAAAGCTGAAACTGAAAGACCAGGCTCTGCTTGAAGAAATCCACAGTGTACAGGAAATGGTTGGCTTTGGAAATCCATCTTTCTGACGTTCTTACAAGTGGATATTTAATATAGAACCCCAAGCCT
CTCTCCTTCCCAAATTGTCACCAGATGAAACCCGCCCATCCCTCCCACCCTTTGTTTGTTGGCTGTTAGATCACATTAAAAAAACCCAAAAACTCAAAA

hide sequence

RefSeq Acc Id:

XM_006251667 ⟹ XP_006251729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,598 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,852,382 - 3,918,036 (+)	NCBI
Rnor_6.0	15	4,285,065 - 4,350,707 (+)	NCBI
Rnor_5.0	15	8,386,331 - 8,452,205 (+)	NCBI

Sequence:

show sequence

GCTATAGTTACAGAAAACAGCCGGCGTCTGTCTCAGGTAGGATAGTTATTCCCTTTCCGAGGCTATAGCTGTCACTCCCACTCCCCAGATCTTTTCTTCCAGGATTCATACCACTTTCCCTTCTGCTA
AGGCCAGGTTGAAATTCTCGCTCAGCCCAAGATCCTGCTTCATCCAGAGCCGGGTCCAGTCCCATCTCCTATCCCCAAGTCGATGGTTGTGGCCCCCCTCTGAGCCTGTGACTAGGAACGGATGCCTC
GTTGATCGCATGAGCAAGAGTTGGGTACTTGTGCAAGGTCACAGTTACTCAGTAGGAAAGTCGTCAATCTCCACGTCTGGGACTGTGGATCTGGTTCAGTGAAGTGTTTCCACTGCGTGCGTGGGGCG
CAAGGCCAAAGAAGACCAGAGAGACTTGACCAAGTGCTGACATGGACCAGCCGTCCAGCGCAGTGAGAACCGTGAACATTACTGTGACAAATGGATATGACTTGAAAGGCTTCAAAGGAGACACCCCA
GTTACTTTTGTCCGTGCAGAATTCAATCAGGCAGTTCTCGGAGACTCTTCAAAAATCACTGTCTCTCCAGAAGGAACTGCAAAATACAATTTTACTTGCAACATTGACCTCAACCCAGATGGGGGAGT
TACTGTAGATGACCTCGCCCACAAACCGTTATTCCTAACGGTGACTGAAGTTTTACCAAGGGAAAAGAAACAGAAAGATGAGAAGACCTTAACTCTTGGCCAGGCTGTGGTGGATCTTCTTCCTTTAC
TAGAAGGAGAGGAGTCATTTGAAACGACGGTCCCATTACACCCCGTGCAGGGGTCACCCTTGGAAACTACTTTGCCAGGCTCTAAGCCATGCAGTCTTGATGTGAAGGTATTTGTGACAGAGCCCTTA
CTGACCCCAGCCCAGGTCGCAGCAAGCAATCTCCTGAAGGTCACGCTGGAGGCGGCCTATTCCGTGCCTGAGTCCTTCATGCCAGTCGGGCCTCAGCAGAACTACATGGTTGGTCTGCAAGTCCCGTC
GGTCGGAGAGAAGGACTACTCTATGATATTCAAGAACGGGAATCTGAAGCTCGGCGGGGAAAGAGAGCCTGTTCCCAGGCCTAAAAAATGGCCTATCGCTAACATTCTTGCTCCTGGAGCTAATAACA
TCCCTGACGAGTTCATTGTTGGGGGGCCCTATGAGGAAGAGGAAGGAGAACTCAACCACCCTGAGGACAGAGAATTAAGGAACCAAGCCGAATGCCTGAAGAAGAGGATTGTCTGGGACCTGGAAAGT
CGCTGCTTCCTCCATCCCTCTGCTGTTGCAAGTTTTCAGAAGCGAATTGCTGATTGCCGACTCTGGCCCGTGGAGATCACAAGAGTGCCTTTGATCGTTGTACCCAAAGCCAAGCCAGGCAAACTTGA
GAAGATCGAAGATGAAAACCAGCTGTCCTTTCACGGCGTGGCCTACGTCAACATGGTCCCACTCCTGTATCCCGGAGTGAAGAGGATACGAGGGGCTTTTCATGTGTACCCCTACCTGGACGGGACAG
TCTTCGAGAAGACCAAGTGCTTGTTCAGCTTGTTCAGGGACACTGGGCACCATTTGGTTCACAATAACAAAGCAGGAGGACTTAACTCCCCGCTGTCCAAACCTCTCTCCAAGAATCTGAAAGAAGAG
AGAACAGGGAAAGACAAGGACATAGACGGACGGCCTCGGCTGGGAGAGTTGCAAGCACCGAGTATAAAATCGCAGAGCTCGGACACCCCTCTGGAAAGCGAAGCGCCTCTAAGCCACAATCTCGAAGG
ACAGCAATACGTGGAGGCGGGGACGTACATCGTCCTGGAGATCCAGCTGGACAAAGCCCTGGTACCAAAGCGGATGCCGGAGGAACTGGCCAGAAGGGTCAAGGATATGATACCCCCGAGGCCACCTC
TCACCCGTCGGACAGGGGGAGCTCAGAAGGCGGTGAGTGACTACCACTCGCAGATCAAGAGCATCTCTAGAGCCATTCTGAATGAGTACCACCGCATGTTTGGGAAGCACCGGCCGAAAGAGGAGAGC
GACATAGACAATGAGACCATGGAGGAGCAGAAATGCCAGCTCAACTATGAGCTCAATTGCTCTGGAAAGTACTTTGCTTTCAAAGAACAGCTCAAGCACGCTGTGGTAAAGATCGTGAGAGAGAAATA
CTTGAAGACAACAGCATTCGAGAGCCAGGAGGAACTGCAGACGTTCATCAGTGAACTTTATGTGTTCTTGGTAGATCAGATGCATGTGGCCCTGAACCAGGCCATGCCAGAAGACGCCCCAAGCAGCA
CCTCAACGATTCAGACGAGCAGTGAGCAGCTTCGGCTCTTCGCGTTCGAGGCAGAAGTCGACGAGAAGTTTGAAATGGCAGCAGTGTATTATGAAGAGAGGTTGGTCCGGGAACCCCAGAACCTGGAA
AACTGGCTGGATTATGGTTCTTTCTGCCTCCTCACTGAAGACAACATCAAAGCACAGGAGTGCTTCCGGAAAGCCCTTTCTCTGAATGAGAGTCACGTTCACAGCCTGTTGCTGTGCGGTGTCCTGGC
TGTCTTGTTGGAGAACTATGAGCAAGCAGAGATCTTCTTTGAGGATGCTACATGCTTGGAACCTACCAATGTCGTTGCCTGGACTTTACTCGGACTGTTCTACGAGATTCAGAATAACGACATTCGGA
TGGAAATGGCGTTCCACGAGGCCTTCAAACAGCTCCAGGCACGAACCCTGCAGACAAAGCTGAAGAGCACGGCTACCGTCCAGAACATTGAGGAAGGAGTGAAGACAGAGCCCAGCTTTGGCCCTTGG
GGGATCACACAGGAGTCCTCCACAGCCATCAAGTCAGAAGGCCAAACAGGACCAAACACTGCTTTGTCCAGTCTAGACGAGTTTTTGGAAGAATCATCTAAGGCGCAGTCTGACTCACAAGAGCCAAT
AATCACTGTACAACCTCTGGAGTCCTCCCTTACACAGAAGTCATCCAATGCCCTGCTAAAGGAGCTGACATCCAAAAAAGAAACATCAAAATGCCAAGATTCATCAGCCTTTTTCTCTCCTACCCACC
AAGCTATTCCCCAGCCCCCTGTGACGATCTTCATGGAGACCATTCGCTTCTTGATGAAGGTCAATGCTGTCCAGTTCGTGCACCGAGTGCTGGCACATGAGCTTCTGTGCCCTCAAGGAGGACCTAGT
TGTGAGTATTATCTGGTTCTGGCCCAGACACACCTTCTCAAGAAGGACTTCGCCAAGACAGAGGAGTACCTGCAGCAGGCAGCACAGATGGACTACCTGAACCCCAACGTCTGGGGTGTGAAGGGCCA
TCTCTACTTCCTGAGTGGAAACCATGCCGAGGCCAAAGAGTGCTACGAGAGAACTGTTAGCTTTGTGGTAGATGCTTCTGAGATGCACTTCATCTTCCTGCGCCTGGGACACATCTACCTGGAAGAGA
AAGAGTATGATAACGCAAAGAGAACATACATGCAAGCCTGTAAGAGATCGCCTTCGTGCCTCACTTGGCTTGGACTAGGAATCGCCTGTTACCGGCTGGAGGAGCTCACTGAAGCTGAGGATGCTCTG
TCTGAAGCCAATGCATTGAATAACTGCAACGCGGAGGTGTGGGCCTATCTGGCTCTGGTCTGCCTGAAGGTTGGACGACAACTAGAAGCTGAGCAGGCTTATAAGTACACAGTAAAGCTGAAACTGAA
AGACCAGGCTCTGCTTGAAGAAATCCACAGTGTACAGGAAATGGTTGGCTTTGGAAATCCATCTTTCTGACGTTCTTACAAGTGGATATTTAATATAGAACCCCAAGCCTCTCTCCTTCCCAAATTGT
CACCAGATGAAACCCGCCCATCCCTCCCACCCTTTGTTTGTTGGCTGTTAGATCACATTAAAAAAACCCAAAAACTCAAAA

hide sequence

RefSeq Acc Id:

XM_039093437 ⟹ XP_038949365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,597 - 3,963,899 (+)	NCBI
mRatBN7.2	15	3,852,381 - 3,913,570 (+)	NCBI

RefSeq Acc Id:

XM_039093438 ⟹ XP_038949366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,918,861 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,871,598 - 3,918,036 (+)	NCBI

RefSeq Acc Id:

XM_039093439 ⟹ XP_038949367

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,597 - 3,952,490 (+)	NCBI
mRatBN7.2	15	3,852,381 - 3,903,297 (+)	NCBI

RefSeq Acc Id:

XM_039093440 ⟹ XP_038949368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,920,943 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,871,601 - 3,918,036 (+)	NCBI

RefSeq Acc Id:

XM_039093441 ⟹ XP_038949369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,921,485 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,872,286 - 3,918,036 (+)	NCBI

RefSeq Acc Id:

XM_039093442 ⟹ XP_038949370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,933,224 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,884,013 - 3,918,036 (+)	NCBI

RefSeq Acc Id:

XM_039093443 ⟹ XP_038949371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,932,423 - 3,967,224 (+)	NCBI
mRatBN7.2	15	3,883,231 - 3,918,036 (+)	NCBI

RefSeq Acc Id:

XM_063274374 ⟹ XP_063130444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,544 - 3,967,224 (+)	NCBI

RefSeq Acc Id:

XM_063274375 ⟹ XP_063130445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,544 - 3,967,224 (+)	NCBI

RefSeq Acc Id:

XM_063274376 ⟹ XP_063130446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,594 - 3,967,224 (+)	NCBI

RefSeq Acc Id:

XM_063274377 ⟹ XP_063130447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,544 - 3,967,224 (+)	NCBI

RefSeq Acc Id:

XM_063274378 ⟹ XP_063130448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,928,234 - 3,967,224 (+)	NCBI

RefSeq Acc Id:

XM_063274379 ⟹ XP_063130449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,597 - 3,947,987 (+)	NCBI

RefSeq Acc Id:

XR_005493747

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,598 - 3,966,475 (+)	NCBI
mRatBN7.2	15	3,852,381 - 3,917,284 (+)	NCBI

RefSeq Acc Id:

XR_010057834

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,901,598 - 3,966,475 (+)	NCBI


Protein RefSeqs	NP_001101840	(Get FASTA)	NCBI Sequence Viewer
	XP_006251727	(Get FASTA)	NCBI Sequence Viewer
	XP_006251728	(Get FASTA)	NCBI Sequence Viewer
	XP_006251729	(Get FASTA)	NCBI Sequence Viewer
	XP_038949365	(Get FASTA)	NCBI Sequence Viewer
	XP_038949366	(Get FASTA)	NCBI Sequence Viewer
	XP_038949367	(Get FASTA)	NCBI Sequence Viewer
	XP_038949368	(Get FASTA)	NCBI Sequence Viewer
	XP_038949369	(Get FASTA)	NCBI Sequence Viewer
	XP_038949370	(Get FASTA)	NCBI Sequence Viewer
	XP_038949371	(Get FASTA)	NCBI Sequence Viewer
	XP_063130444	(Get FASTA)	NCBI Sequence Viewer
	XP_063130445	(Get FASTA)	NCBI Sequence Viewer
	XP_063130446	(Get FASTA)	NCBI Sequence Viewer
	XP_063130447	(Get FASTA)	NCBI Sequence Viewer
	XP_063130448	(Get FASTA)	NCBI Sequence Viewer
	XP_063130449	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86223	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030551
	ENSRNOP00000030551.5
	ENSRNOP00000091914
	ENSRNOP00000091914.1
	ENSRNOP00000095268.1

RefSeq Acc Id:	XP_006251728 ⟸ XM_006251666
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AND1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQPSSAVRTVNITVTNGYDLKGFKGDTPVTFVRAEFNQAVLGDSSKITVSPEGTAKYNFTCNIDLNPDGGVTVDDLAHKPLFLTVTEVLPREKKQKDEKTLTLGQAVVDLLPLLEGEESFETTVPLH PVQGSPLETTLPGSKPCSLDVKVFVTEPLLTPAQVAASNLLKVTLEAAYSVPESFMPVGPQQNYMVGLQVPSVGEKDYSMIFKNGNLKLGGEREPVPRPKKWPIANILAPGANNIPDEFIVGGPYEEE EGELNHPEDRELRNQAECLKKRIVWDLESRCFLHPSAVASFQKRIADCRLWPVEITRVPLIVVPKAKPGKLEKIEDENQLSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLDGTVFEKTKCLFSLFRD TGHHLVHNNKAGGLNSPLSKPLSKNLKEERTGKDKDIDGRPRLGELQAPSIKSQSSDTPLESEAPLSHNLEGQQYVEAGTYIVLEIQLDKALVPKRMPEELARRVKDMIPPRPPLTRRTGGAQKAVSD YHSQIKSISRAILNEYHRMFGKHRPKEESDIDNETMEEQKCQLNYELNCSGKYFAFKEQLKHAVVKIVREKYLKTTAFESQEELQTFISELYVFLVDQMHVALNQAMPEDAPSSTSTIQTSSEQLRLF AFEAEVDEKFEMAAVYYEERLVREPQNLENWLDYGSFCLLTEDNIKAQECFRKALSLNESHVHSLLLCGVLAVLLENYEQAEIFFEDATCLEPTNVVAWTLLGLFYEIQNNDIRMEMAFHEAFKQLQA RTLQTKLKSTATVQNIEEGVKTEPSFGPWGITQESSTAIKSEGQTGIRPRTSHPLSPRPTVELHPQPQGPNTALSSLDEFLEESSKAQSDSQEPIITVQPLESSLTQKSSNALLKELTSKKAIPQPPV TIFMETIRFLMKVNAVQFVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKTEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKECYERTVSFVVDASEMHFIFLRLGHIYLEEKEYDNAKR TYMQACKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNCNAEVWAYLALVCLKVGRQLEAEQAYKYTVKLKLKDQALLEEIHSVQEMVGFGNPSF hide sequence

RefSeq Acc Id:	XP_006251729 ⟸ XM_006251667
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AH20 (UniProtKB/TrEMBL), A0A8I6AND1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQPSSAVRTVNITVTNGYDLKGFKGDTPVTFVRAEFNQAVLGDSSKITVSPEGTAKYNFTCNIDLNPDGGVTVDDLAHKPLFLTVTEVLPREKKQKDEKTLTLGQAVVDLLPLLEGEESFETTVPLH PVQGSPLETTLPGSKPCSLDVKVFVTEPLLTPAQVAASNLLKVTLEAAYSVPESFMPVGPQQNYMVGLQVPSVGEKDYSMIFKNGNLKLGGEREPVPRPKKWPIANILAPGANNIPDEFIVGGPYEEE EGELNHPEDRELRNQAECLKKRIVWDLESRCFLHPSAVASFQKRIADCRLWPVEITRVPLIVVPKAKPGKLEKIEDENQLSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLDGTVFEKTKCLFSLFRD TGHHLVHNNKAGGLNSPLSKPLSKNLKEERTGKDKDIDGRPRLGELQAPSIKSQSSDTPLESEAPLSHNLEGQQYVEAGTYIVLEIQLDKALVPKRMPEELARRVKDMIPPRPPLTRRTGGAQKAVSD YHSQIKSISRAILNEYHRMFGKHRPKEESDIDNETMEEQKCQLNYELNCSGKYFAFKEQLKHAVVKIVREKYLKTTAFESQEELQTFISELYVFLVDQMHVALNQAMPEDAPSSTSTIQTSSEQLRLF AFEAEVDEKFEMAAVYYEERLVREPQNLENWLDYGSFCLLTEDNIKAQECFRKALSLNESHVHSLLLCGVLAVLLENYEQAEIFFEDATCLEPTNVVAWTLLGLFYEIQNNDIRMEMAFHEAFKQLQA RTLQTKLKSTATVQNIEEGVKTEPSFGPWGITQESSTAIKSEGQTGPNTALSSLDEFLEESSKAQSDSQEPIITVQPLESSLTQKSSNALLKELTSKKETSKCQDSSAFFSPTHQAIPQPPVTIFMET IRFLMKVNAVQFVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKTEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKECYERTVSFVVDASEMHFIFLRLGHIYLEEKEYDNAKRTYMQAC KRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNCNAEVWAYLALVCLKVGRQLEAEQAYKYTVKLKLKDQALLEEIHSVQEMVGFGNPSF hide sequence

RefSeq Acc Id:	XP_006251727 ⟸ XM_006251665
- Peptide Label:	isoform X1
- UniProtKB:	D4A513 (UniProtKB/TrEMBL), A0A8I6AND1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQPSSAVRTVNITVTNGYDLKGFKGDTPVTFVRAEFNQAVLGDSSKITVSPEGTAKYNFTCNIDLNPDGGVTVDDLAHKPLFLTVTEVLPREKKQKDEKTLTLGQAVVDLLPLLEGEESFETTVPLH PVQGSPLETTLPGSKPCSLDVKVFVTEPLLTPAQVAASNLLKVTLEAAYSVPESFMPVGPQQNYMVGLQVPSVGEKDYSMIFKNGNLKLGGEREPVPRPKKWPIANILAPGANNIPDEFIVGGPYEEE EGELNHPEDRELRNQAECLKKRIVWDLESRCFLHPSAVASFQKRIADCRLWPVEITRVPLIVVPKAKPGKLEKIEDENQLSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLDGTVFEKTKCLFSLFRD TGHHLVHNNKAGGLNSPLSKPLSKNLKEERTGKDKDIDGRPRLGELQAPSIKSQSSDTPLESEAPLSHNLEGQQYVEAGTYIVLEIQLDKALVPKRMPEELARRVKDMIPPRPPLTRRTGGAQKAVSD YHSQIKSISRAILNEYHRMFGKHRPKEESDIDNETMEEQKCQLNYELNCSGKYFAFKEQLKHAVVKIVREKYLKTTAFESQEELQTFISELYVFLVDQMHVALNQAMPEDAPSSTSTIQTSSEQLRLF AFEAEVDEKFEMAAVYYEERLVREPQNLENWLDYGSFCLLTEDNIKAQECFRKALSLNESHVHSLLLCGVLAVLLENYEQAEIFFEDATCLEPTNVVAWTLLGLFYEIQNNDIRMEMAFHEAFKQLQA RTLQTKLKSTATVQNIEEGVKTEPSFGPWGITQESSTAIKSEGQTGIRPRTSHPLSPRPTVELHPQPQGPNTALSSLDEFLEESSKAQSDSQEPIITVQPLESSLTQKSSNALLKELTSKKETSKCQD SSAFFSPTHQAIPQPPVTIFMETIRFLMKVNAVQFVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKTEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKECYERTVSFVVDASEMHFIFL RLGHIYLEEKEYDNAKRTYMQACKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNCNAEVWAYLALVCLKVGRQLEAEQAYKYTVKLKLKDQALLEEIHSVQEMVGFGNPSF hide sequence

Ensembl Acc Id:

ENSRNOP00000030551 ⟸ ENSRNOT00000035345

RefSeq Acc Id:	XP_038949365 ⟸ XM_039093437
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AND1 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A513-F1-model_v2	AlphaFold	D4A513	1-1141	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699568

Promoter ID:

EPDNEW_R10089

Type:

initiation region

Name:

Cfap70_1

Description:

cilia and flagella associated protein 70

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	4,285,074 - 4,285,134	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-14537	BioCyc
Ensembl Genes	ENSRNOG00000007046	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035345	ENTREZGENE
	ENSRNOT00000035345.8	UniProtKB/TrEMBL
	ENSRNOT00000111064.1	UniProtKB/TrEMBL
	ENSRNOT00000114948	ENTREZGENE
	ENSRNOT00000114948.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	CFAP70	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
NCBI Gene	361006	ENTREZGENE
PANTHER	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70	UniProtKB/TrEMBL
	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70	UniProtKB/TrEMBL
Pfam	TPR_8	UniProtKB/TrEMBL
PhenoGen	Cfap70	PhenoGen
PROSITE	TPR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007046	RatGTEx
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8I6AH20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AND1	ENTREZGENE, UniProtKB/TrEMBL
	D4A513	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-09-11	Cfap70	cilia and flagella associated protein 70	Ttc18	tetratricopeptide repeat domain 18	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ttc18	tetratricopeptide repeat domain 18	Ttc18_predicted	tetratricopeptide repeat domain 18 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ttc18_predicted	tetratricopeptide repeat domain 18 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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