Anapc1 (anaphase promoting complex subunit 1) - Rat Genome Database

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Gene: Anapc1 (anaphase promoting complex subunit 1) Rattus norvegicus
Analyze
Symbol: Anapc1
Name: anaphase promoting complex subunit 1
RGD ID: 1306629
Description: Predicted to enable molecular adaptor activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process; metaphase/anaphase transition of mitotic cell cycle; and protein K11-linked ubiquitination. Predicted to be located in nucleus. Predicted to be part of anaphase-promoting complex. Human ortholog(s) of this gene implicated in Rothmund-Thomson syndrome. Orthologous to human ANAPC1 (anaphase promoting complex subunit 1); PARTICIPATES IN cell cycle pathway, mitotic; ubiquitin/proteasome degradation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: anaphase-promoting complex subunit 1; LOC311412
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23115,850,117 - 115,930,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3115,850,185 - 115,930,273 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3119,747,340 - 119,827,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03128,342,890 - 128,422,697 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03126,003,396 - 126,083,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03121,147,484 - 121,226,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,147,547 - 121,226,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03128,786,183 - 128,864,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43116,212,111 - 116,299,282 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13116,120,249 - 116,203,526 (-)NCBI
Celera3114,679,748 - 114,759,543 (-)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-nitrophenol  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butan-1-ol  (ISO)
butanal  (ISO)
caffeine  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glyphosate  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
Lasiocarpine  (ISO)
menadione  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
riddelliine  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
topotecan  (EXP)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14744933   PMID:16364912   PMID:18485873  


Genomics

Comparative Map Data
Anapc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23115,850,117 - 115,930,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3115,850,185 - 115,930,273 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3119,747,340 - 119,827,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03128,342,890 - 128,422,697 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03126,003,396 - 126,083,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03121,147,484 - 121,226,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,147,547 - 121,226,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03128,786,183 - 128,864,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43116,212,111 - 116,299,282 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13116,120,249 - 116,203,526 (-)NCBI
Celera3114,679,748 - 114,759,543 (-)NCBICelera
Cytogenetic Map3q36NCBI
ANAPC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382111,766,231 - 111,884,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2111,611,639 - 111,884,690 (-)EnsemblGRCh38hg38GRCh38
GRCh372112,525,217 - 112,641,770 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362112,243,109 - 112,358,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 342112,242,872 - 112,357,972NCBI
Celera2106,403,649 - 106,465,406 (+)NCBICelera
Cytogenetic Map2q13NCBI
HuRef2105,096,022 - 105,155,075 (-)NCBIHuRef
CHM1_12112,530,036 - 112,646,728 (-)NCBICHM1_1
T2T-CHM13v2.02112,191,142 - 112,310,602 (-)NCBIT2T-CHM13v2.0
Anapc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392128,452,003 - 128,529,558 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2128,452,024 - 128,529,311 (-)EnsemblGRCm39 Ensembl
GRCm382128,610,083 - 128,687,406 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2128,610,104 - 128,687,391 (-)EnsemblGRCm38mm10GRCm38
MGSCv372128,435,819 - 128,513,131 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362128,304,145 - 128,378,821 (-)NCBIMGSCv36mm8
Celera2129,840,854 - 129,918,028 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.63NCBI
Anapc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554702,183,766 - 2,262,900 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554702,182,163 - 2,262,804 (+)NCBIChiLan1.0ChiLan1.0
ANAPC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12A16,194,907 - 16,313,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A90,143,737 - 90,262,215 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A112,983,873 - 113,036,429 (-)NCBIpanpan1.1PanPan1.1panPan2
ANAPC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11736,210,026 - 36,313,785 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1736,198,631 - 36,312,442 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1735,980,284 - 36,083,761 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01736,988,225 - 37,088,308 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1736,988,257 - 37,088,316 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11736,104,805 - 36,208,349 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01736,176,899 - 36,280,433 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01736,389,150 - 36,492,743 (-)NCBIUU_Cfam_GSD_1.0
Anapc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629281,614,798 - 81,672,714 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936783511,713 - 590,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936783509,287 - 591,153 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANAPC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl344,509,680 - 44,605,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1344,483,961 - 44,605,035 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2346,249,472 - 46,326,362 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANAPC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11414,841,351 - 14,958,734 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1414,841,197 - 14,958,743 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660804,732,844 - 4,851,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anapc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624749460,699 - 569,545 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624749458,670 - 570,799 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Anapc1
397 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:260
Count of miRNA genes:184
Interacting mature miRNAs:214
Transcripts:ENSRNOT00000055875
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)3115638168135181505Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat

Markers in Region
D3Uwm4  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera3114,742,602 - 114,742,771UniSTS
Cytogenetic Map3q36UniSTS
D3Got233  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.03128,830,213 - 128,830,361NCBIRnor5.0
RGSC_v3.43116,251,635 - 116,251,861UniSTSRGSC3.4
Celera3114,715,348 - 114,715,572UniSTS
Cytogenetic Map3q36UniSTS
BF391263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23115,856,599 - 115,856,699 (+)MAPPERmRatBN7.2
Rnor_6.03121,153,962 - 121,154,061NCBIRnor6.0
Rnor_5.03128,858,099 - 128,858,198UniSTSRnor5.0
RGSC_v3.43116,218,526 - 116,218,625UniSTSRGSC3.4
Celera3114,686,163 - 114,686,262UniSTS
RH 3.4 Map3995.5UniSTS
Cytogenetic Map3q36UniSTS
RH133802  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23115,852,330 - 115,852,537 (+)MAPPERmRatBN7.2
Rnor_6.03121,149,693 - 121,149,899NCBIRnor6.0
Rnor_5.03128,862,261 - 128,862,467UniSTSRnor5.0
RGSC_v3.43116,214,257 - 116,214,463UniSTSRGSC3.4
Celera3114,681,894 - 114,682,100UniSTS
RH 3.4 Map3993.5UniSTS
Cytogenetic Map3q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 35 19 19 19 2 2 74 34 41 11 2
Low 15 22 22 22 6 9 1 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000055875   ⟹   ENSRNOP00000052727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3115,850,185 - 115,930,273 (-)Ensembl
Rnor_6.0 Ensembl3121,147,547 - 121,226,125 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099712   ⟹   ENSRNOP00000087529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3115,850,185 - 115,930,239 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111998   ⟹   ENSRNOP00000085653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3115,850,185 - 115,930,273 (-)Ensembl
RefSeq Acc Id: NM_001107771   ⟹   NP_001101241
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,850,185 - 115,930,239 (-)NCBI
Rnor_6.03121,147,547 - 121,226,125 (-)NCBI
Rnor_5.03128,786,183 - 128,864,679 (+)NCBI
RGSC_v3.43116,212,111 - 116,299,282 (-)RGD
Celera3114,679,748 - 114,759,543 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234973   ⟹   XP_006235035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,850,117 - 115,929,757 (-)NCBI
Rnor_6.03121,147,484 - 121,225,783 (-)NCBI
Rnor_5.03128,786,183 - 128,864,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762177   ⟹   XP_008760399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23115,850,117 - 115,930,259 (-)NCBI
Rnor_6.03121,147,484 - 121,225,889 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001101241 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235035 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760399 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL80137 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000052727
  ENSRNOP00000052727.4
  ENSRNOP00000085653.1
  ENSRNOP00000087529.1
RefSeq Acc Id: NP_001101241   ⟸   NM_001107771
- UniProtKB: A6HQ36 (UniProtKB/TrEMBL),   A0A8I6A4J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235035   ⟸   XM_006234973
- Peptide Label: isoform X1
- UniProtKB: A6HQ36 (UniProtKB/TrEMBL),   A0A8I6A4J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760399   ⟸   XM_008762177
- Peptide Label: isoform X1
- UniProtKB: A6HQ36 (UniProtKB/TrEMBL),   A0A8I6A4J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000052727   ⟸   ENSRNOT00000055875
RefSeq Acc Id: ENSRNOP00000087529   ⟸   ENSRNOT00000099712
RefSeq Acc Id: ENSRNOP00000085653   ⟸   ENSRNOT00000111998
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M801-F1-model_v2 AlphaFold F1M801 1-1944 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692413
Promoter ID:EPDNEW_R2938
Type:multiple initiation site
Name:Anapc1_1
Description:anaphase promoting complex subunit 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03121,226,132 - 121,226,192EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306629 AgrOrtholog
BioCyc Gene G2FUF-47940 BioCyc
Ensembl Genes ENSRNOG00000016965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055875 ENTREZGENE
  ENSRNOT00000055875.4 UniProtKB/TrEMBL
  ENSRNOT00000099712.1 UniProtKB/TrEMBL
  ENSRNOT00000111998.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro Apc1 UniProtKB/TrEMBL
  Apc1_3rd UniProtKB/TrEMBL
  APC1_C UniProtKB/TrEMBL
  Apc1_MidN UniProtKB/TrEMBL
  Apc1_N UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  Proteasome/cyclosome_rpt UniProtKB/TrEMBL
KEGG Report rno:311412 UniProtKB/TrEMBL
NCBI Gene 311412 ENTREZGENE
PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 1 UniProtKB/TrEMBL
  PTHR12827 UniProtKB/TrEMBL
Pfam Apc1 UniProtKB/TrEMBL
  APC1_3rd UniProtKB/TrEMBL
  APC1_C UniProtKB/TrEMBL
  Apc1_MidN UniProtKB/TrEMBL
  PC_rep UniProtKB/TrEMBL
PhenoGen Anapc1 PhenoGen
RatGTEx ENSRNOG00000016965 RatGTEx
UniProt A0A8I6A3X6_RAT UniProtKB/TrEMBL
  A0A8I6A4J8 ENTREZGENE, UniProtKB/TrEMBL
  A6HQ36 ENTREZGENE, UniProtKB/TrEMBL
  F1M801_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Anapc1  anaphase promoting complex subunit 1   Anapc1_predicted  anaphase promoting complex subunit 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Anapc1_predicted  anaphase promoting complex subunit 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED