Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rothmund-Thomson Syndrome Type 1 | | ISO | ANAPC1 (Homo sapiens) | 7240710 | | OMIM | | |
|
Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Rothmund-Thomson Syndrome Type 1 | | ISO | ANAPC1 (Homo sapiens) | 7240710 | | OMIM | | |
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:7929068 | PMID:8889548 | PMID:10349636 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11179667 | PMID:11861581 | PMID:12477932 | PMID:12520002 | PMID:14610273 | PMID:14744933 |
PMID:15782199 | PMID:16141072 | PMID:16141073 | PMID:18799693 | PMID:20360068 | PMID:21267068 | PMID:21873635 | PMID:22898775 | PMID:23263983 | PMID:26329581 | PMID:27568566 | PMID:28671696 |
PMID:32325033 | PMID:32434143 | PMID:32554809 | PMID:34942119 |
Anapc1 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ANAPC1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Anapc1 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Anapc1 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ANAPC1 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ANAPC1 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Anapc1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ANAPC1 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ANAPC1 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Anapc1 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Anapc1
2898 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH135847 |
|
||||||||||||||||||||||||||||||
AW547281 |
|
||||||||||||||||||||||||||||||
AI853536 |
|
||||||||||||||||||||||||||||||
X80169 |
|
||||||||||||||||||||||||||||||
UniSTS:234522 |
|
RefSeq Transcripts | NM_008569 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_011239332 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030248086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_004938638 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AK034858 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK052404 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK053383 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK054305 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK077847 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK085014 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK090134 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK149762 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK160209 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK161161 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK164804 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK203385 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL928910 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BB676785 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC057201 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC139002 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC145492 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BE987509 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466519 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X80169 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000014499 ⟹ ENSMUSP00000014499 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000110332 ⟹ ENSMUSP00000105961 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000110333 ⟹ ENSMUSP00000105962 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000123503 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000124418 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000134485 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000143007 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000145906 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000151171 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000154320 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000154995 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | NM_008569 ⟹ NP_032595 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_011239332 ⟹ XP_011237634 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
||||||||||||
Sequence: |
RefSeq Acc Id: | XM_030248086 ⟹ XP_030103946 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
||||||||||||
Sequence: |
RefSeq Acc Id: | XR_004938638 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
|
||||||||
Sequence: |
Protein RefSeqs | NP_032595 | (Get FASTA) | NCBI Sequence Viewer |
XP_011237634 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030103946 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH57201 | (Get FASTA) | NCBI Sequence Viewer |
AAI39003 | (Get FASTA) | NCBI Sequence Viewer | |
AAI45493 | (Get FASTA) | NCBI Sequence Viewer | |
BAC34976 | (Get FASTA) | NCBI Sequence Viewer | |
BAC37032 | (Get FASTA) | NCBI Sequence Viewer | |
BAE29068 | (Get FASTA) | NCBI Sequence Viewer | |
BAE37927 | (Get FASTA) | NCBI Sequence Viewer | |
CAA56450 | (Get FASTA) | NCBI Sequence Viewer | |
EDL28216 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000014499 | ||
ENSMUSP00000014499.4 | |||
ENSMUSP00000105961.2 | |||
ENSMUSP00000105962 | |||
ENSMUSP00000105962.2 | |||
GenBank Protein | P53995 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_032595 ⟸ NM_008569 |
- UniProtKB: | Q8BP33 (UniProtKB/Swiss-Prot), A2ATQ4 (UniProtKB/Swiss-Prot), Q8C772 (UniProtKB/Swiss-Prot), P53995 (UniProtKB/Swiss-Prot), B7ZNX2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_011237634 ⟸ XM_011239332 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A2ATQ5 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_030103946 ⟸ XM_030248086 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B7ZNX2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSMUSP00000105961 ⟸ ENSMUST00000110332 |
RefSeq Acc Id: | ENSMUSP00000105962 ⟸ ENSMUST00000110333 |
RefSeq Acc Id: | ENSMUSP00000014499 ⟸ ENSMUST00000014499 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P53995-F1-model_v2 | AlphaFold | P53995 | 1-1944 | view protein structure |
RGD ID: | 6830786 | ||||||||
Promoter ID: | MM_KWN:31652 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000110332, NM_008569, OTTMUST00000036388, UC008MGR.1 | ||||||||
Position: |
|
RGD ID: | 6878684 | ||||||||
Promoter ID: | EPDNEW_M2793 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Anapc1_1 | ||||||||
Description: | Mus musculus anaphase promoting complex subunit 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | MGI:103097 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000014355 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000014499 | ENTREZGENE |
ENSMUST00000014499.10 | UniProtKB/Swiss-Prot | |
ENSMUST00000110332.2 | UniProtKB/TrEMBL | |
ENSMUST00000110333 | ENTREZGENE | |
ENSMUST00000110333.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.25.10.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | Apc1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Apc1_3rd | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
APC1_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Apc1_MidN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Apc1_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ARM-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Proteasome/cyclosome_rpt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:17222 | UniProtKB/Swiss-Prot |
MGD | MGI:103097 | ENTREZGENE |
NCBI Gene | 17222 | ENTREZGENE |
PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR12827 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | ANAPC1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
APC1_3rd | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
APC1_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Apc1_MidN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PC_rep | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Anapc1 | PhenoGen |
UniProt | A2ATQ4 | ENTREZGENE |
A2ATQ5 | ENTREZGENE, UniProtKB/TrEMBL | |
APC1_MOUSE | UniProtKB/Swiss-Prot | |
B7ZNX2 | ENTREZGENE, UniProtKB/TrEMBL | |
P53995 | ENTREZGENE | |
Q3TP10_MOUSE | UniProtKB/TrEMBL | |
Q3UE43_MOUSE | UniProtKB/TrEMBL | |
Q6PG65_MOUSE | UniProtKB/TrEMBL | |
Q8BP33 | ENTREZGENE | |
Q8C772 | ENTREZGENE | |
UniProt Secondary | A2ATQ4 | UniProtKB/Swiss-Prot |
Q8BP33 | UniProtKB/Swiss-Prot | |
Q8C772 | UniProtKB/Swiss-Prot |