Usp22 (ubiquitin specific peptidase 22) - Rat Genome Database

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Gene: Usp22 (ubiquitin specific peptidase 22) Ictidomys tridecemlineatus
Analyze
Symbol: Usp22
Name: ubiquitin specific peptidase 22
RGD ID: 12727364
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN chromatin remodeling (inferred); G2/M transition of mitotic cell cycle (inferred); positive regulation of DNA-templated transcription (inferred); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; FOUND IN SAGA complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 22
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560262,248,926 - 62,287,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936741580,224 - 618,628 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936741580,230 - 618,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp22Squirrelchromatin remodeling involved_inIEAGO:0010485|GO:0140936150520179 GOCGO_REF:0000108
Usp22SquirrelG2/M transition of mitotic cell cycle involved_inIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelpositive regulation of DNA-templated transcription involved_inIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelpositive regulation of mitotic cell cycle involved_inIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelpositive regulation of type I interferon production involved_inIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelprotein deubiquitination involved_inIEAInterPro:IPR001394150520179 InterProGO_REF:0000002
Usp22Squirrelprotein deubiquitination involved_inIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelprotein deubiquitination acts_upstream_of_or_withinIEAUniProtKB:Q5DU02|ensembl:ENSMUSP00000041263150520179 EnsemblGO_REF:0000107
Usp22Squirrelproteolysis involved_inIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
Usp22Squirrelregulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp22SquirrelSAGA complex part_ofIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107

Molecular Function
1 to 20 of 23 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp22Squirrelcysteine-type deubiquitinase activity contributes_toISORGD:13212109068941 PMID:18206973UniProtKBPMID:18206973
Usp22Squirrelcysteine-type deubiquitinase activity enablesIEAUniRule:UR000880756150520179 UniProtGO_REF:0000104
Usp22Squirrelcysteine-type deubiquitinase activity enablesIEAEC:3.4.19.12150520179 UniProtGO_REF:0000003
Usp22Squirrelcysteine-type deubiquitinase activity enablesIEAUniProtKB:Q5DU02|UniProtKB:Q9UPT9|ensembl:ENSMUSP00000041263|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelcysteine-type deubiquitinase activity enablesIEAInterPro:IPR001394|InterPro:IPR018200150520179 InterProGO_REF:0000002
Usp22Squirrelcysteine-type peptidase activity enablesIEAUniProtKB-KW:KW-0788150520179 UniProtGO_REF:0000043
Usp22Squirrelenzyme binding enablesIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelhistone H2A deubiquitinase activity enablesIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelhistone H2B deubiquitinase activity enablesIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelhistone H4 acetyltransferase activity contributes_toIEAUniProtKB:Q9UPT9|ensembl:ENSP00000261497150520179 EnsemblGO_REF:0000107
Usp22Squirrelhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
Usp22Squirrelmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
Usp22Squirrelpeptidase activity enablesIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
Usp22Squirrelprotein binding enablesISOUniProtKB:Q96AE49068941 PMID:21779003IntActPMID:21779003
Usp22Squirrelprotein binding enablesISOUniProtKB:Q14CW9|UniProtKB:Q96GX29068941 PMID:27601583UniProtPMID:27601583
Usp22Squirrelprotein binding enablesISOUniProtKB:O95429|UniProtKB:Q14CW9|UniProtKB:Q5JR59-3|UniProtKB:Q9NRN79068941 PMID:32296183IntActPMID:32296183
Usp22Squirrelprotein binding enablesISOUniProtKB:Q14CW99068941 PMID:18206972UniProtPMID:18206972
Usp22Squirrelprotein binding enablesISOUniProtKB:Q96JN09068941 PMID:29628311ARUK-UCLPMID:29628311
Usp22Squirrelprotein binding enablesISOUniProtKB:Q134699068941 PMID:24561192IntActPMID:24561192
Usp22Squirrelprotein binding enablesISOUniProtKB:Q9NRN79068941 PMID:19615732, PMID:25416956, PMID:28514442, PMID:33961781IntActPMID:19615732|PMID:25416956|PMID:28514442|PMID:33961781
1 to 20 of 23 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Usp22Squirrelhistone modification pathway   ISORGD:13212109068941 RGDPMID:24647359|REF_RGD_ID:9479061
Usp22SquirrelRNA polymerase II transcription initiation pathway  ISORGD:13212109068941 RGDPMID:22426530|REF_RGD_ID:9681728
PMID:22301074  



Usp22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560262,248,926 - 62,287,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936741580,224 - 618,628 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936741580,230 - 618,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381720,999,596 - 21,043,419 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1720,999,596 - 21,043,760 (-)EnsemblGRCh38hg38GRCh38
GRCh371720,902,909 - 20,946,324 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361720,843,498 - 20,886,944 (-)NCBINCBI36Build 36hg18NCBI36
Build 341720,843,501 - 20,886,944NCBI
Celera1721,596,363 - 21,639,730 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1720,105,104 - 20,134,191 (-)NCBIHuRef
CHM1_11720,912,612 - 20,956,003 (-)NCBICHM1_1
T2T-CHM13v2.01720,948,437 - 20,992,181 (-)NCBIT2T-CHM13v2.0
Usp22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,042,607 - 61,065,885 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,042,611 - 61,065,881 (-)EnsemblGRCm39 Ensembl
GRCm381161,151,781 - 61,175,059 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,151,785 - 61,175,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,965,283 - 60,988,561 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,582,720 - 61,604,614 (-)NCBIMGSCv36mm8
MGSCv361160,969,222 - 60,991,116 (-)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
Usp22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,328,092 - 46,354,939 (-)NCBIGRCr8
mRatBN7.21045,828,619 - 45,855,468 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1045,828,622 - 45,855,497 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,533,750 - 50,557,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,024,143 - 50,048,217 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,527,710 - 45,551,785 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,429,201 - 47,453,298 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,429,002 - 47,453,442 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,203,849 - 47,227,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,303,727 - 47,327,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,315,918 - 47,341,370 (-)NCBI
Celera1045,085,173 - 45,109,272 (-)NCBICelera
Cytogenetic Map10q22NCBI
Usp22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955577978,152 - 1,002,480 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955577979,317 - 1,002,478 (-)NCBIChiLan1.0ChiLan1.0
USP22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21950,346,675 - 50,390,168 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11755,215,283 - 55,258,620 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01730,606,845 - 30,650,281 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11735,468,177 - 35,511,672 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1735,468,177 - 35,511,672 (+)Ensemblpanpan1.1panPan2
USP22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1542,493,776 - 42,519,740 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl542,496,472 - 42,540,378 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha542,586,089 - 42,678,063 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0542,555,402 - 42,647,432 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl542,594,246 - 42,647,601 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1542,521,953 - 42,613,962 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0542,469,373 - 42,561,372 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0542,661,849 - 42,753,883 (-)NCBIUU_Cfam_GSD_1.0
USP22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,271,641 - 61,308,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11261,273,939 - 61,308,381 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
USP22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11619,110,710 - 19,151,565 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1619,107,508 - 19,151,603 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660591,608,381 - 1,661,766 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248494,515,584 - 4,557,972 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248494,516,849 - 4,557,656 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005339442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000028952   ⟹   ENSSTOP00000020090
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936741580,224 - 618,628 (+)Ensembl
RefSeq Acc Id: XM_005339442   ⟹   XP_005339499
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560262,248,926 - 62,287,018 (-)NCBI
SpeTri2.0NW_004936741580,230 - 618,322 (+)NCBI
Sequence:
Protein RefSeqs XP_005339499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020090.2
GenBank Protein KAG3270353 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005339499   ⟸   XM_005339442
- UniProtKB: I3N6U4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000020090   ⟸   ENSSTOT00000028952
UBP-type   USP



1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000023814 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028952.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  Ub_carboxyl-term_hydrolase UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_UBP UniProtKB/TrEMBL
NCBI Gene Usp22 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
  zf-UBP UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
  ZF_UBP UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt I3N6U4 ENTREZGENE, UniProtKB/TrEMBL
1 to 23 of 23 rows