Psma8 (proteasome 20S subunit alpha 8) - Rat Genome Database

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Gene: Psma8 (proteasome 20S subunit alpha 8) Ictidomys tridecemlineatus
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Symbol: Psma8
Name: proteasome 20S subunit alpha 8
RGD ID: 12725358
Description: INVOLVED IN meiotic cell cycle (inferred); proteasomal protein catabolic process (inferred); regulation of meiosis I (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); proteasome complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit alpha 8; proteasome subunit alpha 8, transcript variant X1; proteasome subunit alpha 8, transcript variant X2; proteasome subunit alpha 8, transcript variant X3; proteasome subunit alpha type-7-like; proteasome subunit alpha-type 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,456,547 - 58,510,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365505,305,851 - 5,358,717 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365505,305,851 - 5,358,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psma8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,456,547 - 58,510,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365505,305,851 - 5,358,717 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365505,305,851 - 5,358,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,133,869 - 26,193,355 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1826,133,852 - 26,193,355 (+)EnsemblGRCh38hg38GRCh38
GRCh371823,713,833 - 23,773,319 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361821,967,814 - 22,027,317 (+)NCBINCBI36Build 36hg18NCBI36
Build 341821,967,838 - 22,027,318NCBI
Celera1820,528,304 - 20,584,262 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1820,571,213 - 20,624,030 (+)NCBIHuRef
CHM1_11823,641,123 - 23,700,627 (+)NCBICHM1_1
T2T-CHM13v2.01826,328,519 - 26,387,998 (+)NCBIT2T-CHM13v2.0
Psma8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391814,839,192 - 14,895,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1814,839,208 - 14,895,358 (+)EnsemblGRCm39 Ensembl
GRCm381814,706,135 - 14,762,301 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1814,706,151 - 14,762,301 (+)EnsemblGRCm38mm10GRCm38
MGSCv371814,864,660 - 14,920,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361814,849,169 - 14,905,863 (+)NCBIMGSCv36mm8
Celera1814,934,136 - 14,984,486 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map188.25NCBI
Psma8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,138,226 - 6,202,802 (+)NCBIGRCr8
mRatBN7.2185,863,594 - 5,928,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,863,608 - 5,928,226 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,079,489 - 6,143,936 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0186,867,100 - 6,931,547 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,139,841 - 6,204,293 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,114,757 - 6,182,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,114,701 - 6,182,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,079,006 - 6,144,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,042,097 - 6,047,010 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,963,896 - 6,016,645 (+)NCBI
Celera185,893,308 - 5,957,752 (+)NCBICelera
Cytogenetic Map18p13NCBI
Psma8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540214,230,204 - 14,278,508 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540214,230,119 - 14,278,987 (+)NCBIChiLan1.0ChiLan1.0
PSMA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21743,562,767 - 43,620,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11829,255,363 - 29,312,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01819,391,216 - 19,447,259 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11823,001,111 - 23,056,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1823,000,562 - 23,057,399 (+)Ensemblpanpan1.1panPan2
PSMA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1762,432,477 - 62,472,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl762,432,949 - 62,472,879 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha761,866,416 - 61,906,879 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0762,482,417 - 62,522,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl762,482,889 - 62,603,858 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1762,154,155 - 62,194,668 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0762,167,303 - 62,207,856 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0762,470,446 - 62,510,942 (-)NCBIUU_Cfam_GSD_1.0
PSMA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6110,799,283 - 110,837,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16110,799,065 - 110,836,937 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26103,752,064 - 103,799,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11854,384,955 - 54,441,692 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1854,385,855 - 54,440,912 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605029,120,385 - 29,176,774 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247706,185,767 - 6,236,505 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247706,183,774 - 6,235,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000015710   ⟹   ENSSTOP00000014063
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365505,305,851 - 5,358,717 (+)Ensembl
RefSeq Acc Id: XM_005329049   ⟹   XP_005329106
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494458,456,547 - 58,510,336 (-)NCBI
SpeTri2.0NW_0049365505,305,851 - 5,358,717 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329106 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014063.3
GenBank Protein KAG3294053 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294054 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294055 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005329106   ⟸   XM_005329049
- UniProtKB: I3MQ79 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000014063   ⟸   ENSSTOT00000015710
Protein Domains
Proteasome alpha-type subunits


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015708 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015710.3 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_alpha UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
NCBI Gene Psma8 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA-TYPE 8 UniProtKB/TrEMBL
  PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/TrEMBL
PROSITE PROTEASOME_ALPHA_1 UniProtKB/TrEMBL
  PROTEASOME_ALPHA_2 UniProtKB/TrEMBL
SMART Proteasome_A_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt I3MQ79 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Psma8  proteasome 20S subunit alpha 8  Psma8  proteasome subunit alpha 8  Symbol and/or name change 5135510 APPROVED