PSMA8 (proteasome 20S subunit alpha 8) - Rat Genome Database

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Gene: PSMA8 (proteasome 20S subunit alpha 8) Sus scrofa
Analyze
Symbol: PSMA8
Name: proteasome 20S subunit alpha 8
RGD ID: 14151050
Description: INVOLVED IN meiotic cell cycle (inferred); proteasomal protein catabolic process (inferred); proteolysis involved in protein catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); proteasome complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome (prosome, macropain) subunit, alpha type, 8; proteasome subunit alpha 8; proteasome subunit alpha type-7-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6110,799,283 - 110,837,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16110,799,065 - 110,836,937 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26103,752,064 - 103,799,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:23550158   PMID:30032202  


Genomics

Comparative Map Data
PSMA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6110,799,283 - 110,837,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16110,799,065 - 110,836,937 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26103,752,064 - 103,799,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,133,869 - 26,193,355 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1826,133,852 - 26,193,355 (+)EnsemblGRCh38hg38GRCh38
GRCh371823,713,833 - 23,773,319 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361821,967,814 - 22,027,317 (+)NCBINCBI36Build 36hg18NCBI36
Build 341821,967,838 - 22,027,318NCBI
Celera1820,528,304 - 20,584,262 (+)NCBICelera
Cytogenetic Map18q11.2NCBI
HuRef1820,571,213 - 20,624,030 (+)NCBIHuRef
CHM1_11823,641,123 - 23,700,627 (+)NCBICHM1_1
T2T-CHM13v2.01826,328,519 - 26,387,998 (+)NCBIT2T-CHM13v2.0
Psma8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391814,839,192 - 14,895,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1814,839,208 - 14,895,358 (+)EnsemblGRCm39 Ensembl
GRCm381814,706,135 - 14,762,301 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1814,706,151 - 14,762,301 (+)EnsemblGRCm38mm10GRCm38
MGSCv371814,864,660 - 14,920,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361814,849,169 - 14,905,863 (+)NCBIMGSCv36mm8
Celera1814,934,136 - 14,984,486 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map188.25NCBI
Psma8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,138,226 - 6,202,802 (+)NCBIGRCr8
mRatBN7.2185,863,594 - 5,928,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,863,608 - 5,928,226 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,079,489 - 6,143,936 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0186,867,100 - 6,931,547 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,139,841 - 6,204,293 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,114,757 - 6,182,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,114,701 - 6,182,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,079,006 - 6,144,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,042,097 - 6,047,010 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,963,896 - 6,016,645 (+)NCBI
Celera185,893,308 - 5,957,752 (+)NCBICelera
Cytogenetic Map18p13NCBI
Psma8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540214,230,204 - 14,278,508 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540214,230,119 - 14,278,987 (+)NCBIChiLan1.0ChiLan1.0
PSMA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21743,562,767 - 43,620,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11829,255,363 - 29,312,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01819,391,216 - 19,447,259 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11823,001,111 - 23,056,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1823,000,562 - 23,057,399 (+)Ensemblpanpan1.1panPan2
PSMA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1762,432,477 - 62,472,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl762,432,949 - 62,472,879 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha761,866,416 - 61,906,879 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0762,482,417 - 62,522,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl762,482,889 - 62,603,858 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1762,154,155 - 62,194,668 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0762,167,303 - 62,207,856 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0762,470,446 - 62,510,942 (-)NCBIUU_Cfam_GSD_1.0
Psma8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,456,547 - 58,510,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365505,305,851 - 5,358,717 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365505,305,851 - 5,358,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11854,384,955 - 54,441,692 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1854,385,855 - 54,440,912 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605029,120,385 - 29,176,774 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psma8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247706,185,767 - 6,236,505 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247706,183,774 - 6,235,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PSMA8
600 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000004117   ⟹   ENSSSCP00000004025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6110,799,283 - 110,837,255 (+)Ensembl
RefSeq Acc Id: XM_021096195   ⟹   XP_020951854
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16110,799,067 - 110,836,937 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096196   ⟹   XP_020951855
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16110,799,065 - 110,836,517 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021096198   ⟹   XP_020951857
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16110,799,068 - 110,836,937 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020951855   ⟸   XM_021096196
- Peptide Label: isoform X2
- UniProtKB: A0A8D1JP35 (UniProtKB/TrEMBL),   A0A8D2BKW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951854   ⟸   XM_021096195
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VLE1 (UniProtKB/TrEMBL),   F1SBA5 (UniProtKB/TrEMBL),   A0A8D1JP35 (UniProtKB/TrEMBL),   A0A8D2BKW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951857   ⟸   XM_021096198
- Peptide Label: isoform X3
- UniProtKB: A0A8D1QPD5 (UniProtKB/TrEMBL),   A0A8D1D967 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004025   ⟸   ENSSSCT00000004117

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005026091 UniProtKB/TrEMBL
  ENSSSCG00015039853 UniProtKB/TrEMBL
  ENSSSCG00025051747 UniProtKB/TrEMBL
  ENSSSCG00030051997 UniProtKB/TrEMBL
  ENSSSCG00035027139 UniProtKB/TrEMBL
  ENSSSCG00040006740 UniProtKB/TrEMBL
  ENSSSCG00045039284 UniProtKB/TrEMBL
  ENSSSCG00050063002 UniProtKB/TrEMBL
  ENSSSCG00055014249 UniProtKB/TrEMBL
  ENSSSCG00060046219 UniProtKB/TrEMBL
  ENSSSCG00065072931 UniProtKB/TrEMBL
  ENSSSCG00070025344 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004117 ENTREZGENE
  ENSSSCT00000004117.5 UniProtKB/TrEMBL
  ENSSSCT00005041751.1 UniProtKB/TrEMBL
  ENSSSCT00005041765.1 UniProtKB/TrEMBL
  ENSSSCT00015053546.1 UniProtKB/TrEMBL
  ENSSSCT00015053605.1 UniProtKB/TrEMBL
  ENSSSCT00025070852.1 UniProtKB/TrEMBL
  ENSSSCT00025070914.1 UniProtKB/TrEMBL
  ENSSSCT00030072498.1 UniProtKB/TrEMBL
  ENSSSCT00030072504.1 UniProtKB/TrEMBL
  ENSSSCT00035035874.1 UniProtKB/TrEMBL
  ENSSSCT00035035878.1 UniProtKB/TrEMBL
  ENSSSCT00040008904.1 UniProtKB/TrEMBL
  ENSSSCT00040008913.1 UniProtKB/TrEMBL
  ENSSSCT00045068393.1 UniProtKB/TrEMBL
  ENSSSCT00045068400.1 UniProtKB/TrEMBL
  ENSSSCT00050085809.1 UniProtKB/TrEMBL
  ENSSSCT00050085810.1 UniProtKB/TrEMBL
  ENSSSCT00055028251.1 UniProtKB/TrEMBL
  ENSSSCT00055028301.1 UniProtKB/TrEMBL
  ENSSSCT00060062739.1 UniProtKB/TrEMBL
  ENSSSCT00060062757.1 UniProtKB/TrEMBL
  ENSSSCT00065100368.1 UniProtKB/TrEMBL
  ENSSSCT00065100384.1 UniProtKB/TrEMBL
  ENSSSCT00070050652.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_alpha-type UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
NCBI Gene PSMA8 ENTREZGENE
PANTHER PROTEASOME SUBUNIT ALPHA-TYPE 8 UniProtKB/TrEMBL
  PROTEASOME SUBUNIT ALPHA/BETA UniProtKB/TrEMBL
Pfam Proteasome UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/TrEMBL
PROSITE PROTEASOME_ALPHA_1 UniProtKB/TrEMBL
  PROTEASOME_ALPHA_2 UniProtKB/TrEMBL
SMART Proteasome_A_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A4X1VLE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1D967 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JP35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QPD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BKW8 ENTREZGENE, UniProtKB/TrEMBL
  F1SBA5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91902 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 PSMA8  proteasome 20S subunit alpha 8  PSMA8  proteasome subunit alpha 8  Symbol and/or name change 5135510 APPROVED