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Gene: Sec16a (SEC16 homolog A, endoplasmic reticulum export factor) Ictidomys tridecemlineatus

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Symbol:

Sec16a

Name:

SEC16 homolog A, endoplasmic reticulum export factor

RGD ID:

12725280

Description:

INVOLVED IN substantia nigra development (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytosol (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum exit site (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	201,999,577 - 202,031,070 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	1,343,879 - 1,375,508 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	1,344,019 - 1,375,483 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec16a	Squirrel	Adams-Oliver Syndrome 5		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Adams-Oliver syndrome 5	ClinVar	PMID:16025100\|PMID:19597493\|PMID:19668216\|PMID:21457232\|PMID:22318994\|PMID:23034536\|PMID:23386033\|PMID:25132448\|PMID:25516202\|PMID:25963545\|PMID:26820064\|PMID:28125082\|PMID:28492532\|PMID:29907982
Sec16a	Squirrel	autosomal dominant intellectual developmental disorder 8		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder with or without hyperkinetic movements and seizures, autosomal more ...	ClinVar	PMID:28492532
Sec16a	Squirrel	autosomal dominant nocturnal frontal lobe epilepsy 5		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Autosomal dominant nocturnal frontal lobe epilepsy 5	ClinVar	PMID:28492532
Sec16a	Squirrel	developmental and epileptic encephalopathy 14		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 14 \| ClinVar Annotator: match by more ...	ClinVar	PMID:16025100\|PMID:19264732\|PMID:19597493\|PMID:19668216\|PMID:21457232\|PMID:22318994\|PMID:23034536\|PMID:23386033\|PMID:25132448\|PMID:25516202\|PMID:25963545\|PMID:26820064\|PMID:27891178\|PMID:28125082\|PMID:28492532
Sec16a	Squirrel	Ehlers-Danlos syndrome classic type 1		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome, classic type, 1	ClinVar	PMID:28492532\|PMID:29907982
Sec16a	Squirrel	epilepsy		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Seizure	ClinVar
Sec16a	Squirrel	Joubert syndrome 1		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:16025100\|PMID:19597493\|PMID:19668216\|PMID:21457232\|PMID:22318994\|PMID:23034536\|PMID:23386033\|PMID:25132448\|PMID:25516202\|PMID:25963545\|PMID:26820064\|PMID:28125082\|PMID:28492532
Sec16a	Squirrel	Kleefstra syndrome 1		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Kleefstra syndrome 1	ClinVar	PMID:19264732\|PMID:22318994\|PMID:22890305\|PMID:25741868\|PMID:27891178\|PMID:28492532\|PMID:31209758
Sec16a	Squirrel	Leigh disease		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Leigh syndrome	ClinVar	PMID:28492532
Sec16a	Squirrel	primary coenzyme Q10 deficiency 7		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome	ClinVar	PMID:28492532
Sec16a	Squirrel	Rafiq syndrome		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Rafiq syndrome	ClinVar	PMID:24566669\|PMID:28492532\|PMID:30982612
Sec16a	Squirrel	tuberous sclerosis 1		ISO	RGD:1354294	8554872	ClinVar Annotator: match by term: Tuberous sclerosis 1	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec16a	Squirrel	endoplasmic reticulum organization	involved_in	IEA	UniProtKB:E9QAT4\|UniProtKB:O15027\|ensembl:ENSMUSP00000109716\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	endoplasmic reticulum to Golgi vesicle-mediated transport	involved_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	Golgi organization	involved_in	IEA	PANTHER:PTN000333960	150520179		TreeGrafter	GO_REF:0000118
Sec16a	Squirrel	Golgi to plasma membrane transport	involved_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	protein exit from endoplasmic reticulum	involved_in	IEA	UniProtKB:E9QAT4\|ensembl:ENSMUSP00000109716	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	protein localization to endoplasmic reticulum exit site	involved_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	protein localization to endoplasmic reticulum exit site	involved_in	IEA	PANTHER:PTN000333960	150520179		TreeGrafter	GO_REF:0000118
Sec16a	Squirrel	protein localization to plasma membrane	involved_in	IEA	UniProtKB:E9QAT4\|ensembl:ENSMUSP00000109716	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	protein stabilization	involved_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653	150520179		UniProt	GO_REF:0000043
Sec16a	Squirrel	regulation of COPII vesicle coating	involved_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	response to endoplasmic reticulum stress	involved_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	substantia nigra development	involved_in	ISO	RGD:1354294	9068941	PMID:22926577	UniProt	PMID:22926577
Sec16a	Squirrel	vesicle-mediated transport	involved_in	IEA	UniProtKB-KW:KW-0931	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec16a	Squirrel	cytosol	located_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	endoplasmic reticulum	located_in	IEA	UniProtKB-KW:KW-0256	150520179		UniProt	GO_REF:0000043
Sec16a	Squirrel	endoplasmic reticulum	located_in	IEA	UniProtKB-SubCell:SL-0095	150520179		UniProt	GO_REF:0000044
Sec16a	Squirrel	endoplasmic reticulum exit site	located_in	IEA	ARBA:ARBA00028217	150520179		UniProt	GO_REF:0000117
Sec16a	Squirrel	endoplasmic reticulum exit site	located_in	IEA	PANTHER:PTN000333960	150520179		TreeGrafter	GO_REF:0000118
Sec16a	Squirrel	endoplasmic reticulum exit site	located_in	IEA	UniProtKB:E9QAT4\|UniProtKB:O15027\|ensembl:ENSMUSP00000109716\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	endoplasmic reticulum membrane	located_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	ER to Golgi transport vesicle membrane	located_in	IEA	PANTHER:PTN000333960	150520179		TreeGrafter	GO_REF:0000118
Sec16a	Squirrel	Golgi apparatus	located_in	IEA	UniProtKB-KW:KW-0333	150520179		UniProt	GO_REF:0000043
Sec16a	Squirrel	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	150520179		UniProt	GO_REF:0000044
Sec16a	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Sec16a	Squirrel	organelle membrane	located_in	IEA	UniProtKB:O15027\|ensembl:ENSP00000508822	150520179		Ensembl	GO_REF:0000107
Sec16a	Squirrel	perinuclear region of cytoplasm	located_in	IEA	UniProtKB:E9QAT4\|ensembl:ENSMUSP00000109716	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q9H8Y8	9068941	PMID:28067262	UniProt	PMID:28067262
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q01405	9068941	PMID:17428803	UniProt	PMID:17428803
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q5S006	9068941	PMID:25201882	UniProt	PMID:25201882
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:P61027	9068941	PMID:27354378	UniProt	PMID:27354378
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:P55735	9068941	PMID:19638414, PMID:25201882	UniProt	PMID:19638414\|PMID:25201882
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q6ZNJ1\|UniProtKB:Q96N67	9068941	PMID:29187380	IntAct	PMID:29187380
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q8BG47\|UniProtKB:Q8QZS5	9068941	PMID:29300766	UniProt	PMID:29300766
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:P55735\|UniProtKB:Q01405	9068941	PMID:17428803	UniProt	PMID:17428803
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q5S007	9068941	PMID:25201882, PMID:31046837	IntAct	PMID:25201882\|PMID:31046837
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q5JRA6	9068941	PMID:28442536	UniProt	PMID:28442536
Sec16a	Squirrel	protein binding	enables	ISO	UniProtKB:Q96JE7	9068941	PMID:22355596	UniProt	PMID:22355596

PMID:30032202

Sec16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	201,999,577 - 202,031,070 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	1,343,879 - 1,375,508 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	1,344,019 - 1,375,483 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEC16A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	136,440,105 - 136,484,740 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	136,440,096 - 136,483,759 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	139,334,557 - 139,378,235 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	138,454,369 - 138,497,328 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	109,849,015 - 109,891,964 (-)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	108,793,635 - 108,837,485 (-)	NCBI		HuRef
CHM1_1	9	139,482,991 - 139,526,945 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	148,669,197 - 148,713,859 (-)	NCBI		T2T-CHM13v2.0

Sec16a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	26,299,443 - 26,336,138 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	26,299,443 - 26,335,228 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	26,409,431 - 26,446,293 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	26,409,431 - 26,445,216 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	26,264,951 - 26,300,736 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	26,231,445 - 26,250,355 (-)	NCBI		MGSCv36	mm8
Celera	2	26,127,145 - 26,163,053 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	18.89	NCBI

Sec16a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	29,627,779 - 29,662,925 (-)	NCBI		GRCr8
mRatBN7.2	3	9,229,687 - 9,264,837 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	9,229,687 - 9,264,273 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	12,283,667 - 12,318,439 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	20,866,897 - 20,901,669 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	19,122,236 - 19,157,008 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	3,856,218 - 3,890,785 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	3,856,218 - 3,890,758 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	9,217,446 - 9,252,578 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	4,583,882 - 4,613,980 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	4,049,023 - 4,084,074 (-)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

Sec16a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	4,273,581 - 4,303,157 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	4,272,623 - 4,304,314 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEC16A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	2,897,588 - 2,943,143 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	2,899,923 - 2,945,478 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	107,516,556 - 107,560,930 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	136,493,957 - 136,533,672 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	136,493,957 - 136,533,655 (-)	Ensembl	panpan1.1		panPan2

SEC16A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	49,027,190 - 49,060,858 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	49,031,669 - 49,060,848 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	48,277,816 - 48,311,534 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	49,903,885 - 49,937,614 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	49,903,923 - 49,937,604 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	48,684,649 - 48,718,370 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	48,978,370 - 49,012,325 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	49,026,101 - 49,059,830 (+)	NCBI		UU_Cfam_GSD_1.0

SEC16A
(Sus scrofa - pig)

No map positions available.

SEC16A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	1,718,520 - 1,763,562 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	1,724,838 - 1,761,941 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	3,452,828 - 3,498,315 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sec16a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	1,594,899 - 1,629,409 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	1,595,021 - 1,628,985 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005336931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021734344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000014137 ⟹ ENSSTOP00000012664

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936669	1,343,879 - 1,375,508 (+)	Ensembl

RefSeq Acc Id:

XM_005336931 ⟹ XP_005336988

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	201,999,577 - 202,031,070 (-)	NCBI
SpeTri2.0	NW_004936669	1,344,019 - 1,375,483 (+)	NCBI

Sequence:

show sequence

TGCCTCAGCCCTCAAGTTGCTGGGATTACAGCTCAGATTAAGGAAAAAACTCTACCCTGCCTTCTCTGTAAGCAGCATCTCCTTGTGCAAGAGGTCAATTATGCAGCCACCACCCCAGGCAGTCCCAT
CTGGCATGGCTGGACCTCCTCCGGCTGGGAATCCTCGGAGCATGTTCTGGGCTAACAGCCCTCACAGGAGACCAGCCAGTAATAACATACCAGTGACTCCAATAAGTTTCCCATTGCAGCCAGTAACA
GATCCGTTTGCTTTTAGTAGACAGACGCTCCAAAATACACCATTGGGTGGTTCCTCTAAAAGTGACCTACCTATTTTGCATAGCTCAACCCTCCCAGCATTTTCTCAATGGCCTGGTTTGCCTGTGCC
TCACACAAATGCCGGGGATAGCTCCCAAGGACCCTACGAGCCTCTGCCAGGACCTCTGTCACAGCCTGGGCCAGAGGCCAGTCTCCTTCCTACTACATCCATCTCTTCTCTGCTGCCTGGGCCTGAGA
TGAACAGGAATTCGGAGGTTGGCTCCACCTCAGGGCCTGAAGTTCAGACTCTGCCACATCCACCTCATTACATTCCAGGAATGGGTCCTGACCAGTCTCAGGGGAGCCATCTGCATGGGAGTGGGTCT
GGACCTGATCAACCCTTGAATAAGTATACCCCACAAGATGGTGCTGTGGCCCCAGCAGCATCCCCTTTATTCTCCCAGCCTCAACAGATGCCAGGTCAGGGGGCACCAGTGTGGGGAAGCCCACAGCC
CTCCCATCAGCACCACTGCCCCTGCCCAGCAGGACTTGTTCAGAGCATAGGACCCCAGGCTCCCAGTGCTCCCCATTTTCCTGCTCCTTCCAACCTGCACCATGGTCTTGGCCAGGAGTCCCATAGCC
CACTTGTGTCTCCTCCAGAACATTTGGCTGCTGGTGGAGGGAATGAATCAGTCCGCCTGCCTAGTGGAAACCACTCAGCAAGTAACTTGCATCCTGAACATGCGCTGGGGCAGAATTCCAGAAGCAGG
AGTACATGGGCAAGCCAGGAATTCAGACAGAATCCAGCAGCGAATAAAGAGCATTTGCCAGACCCTGCCATTGTCAATACTCTCACTCAGGGAAATAGCCCCGAAAACCACGTGCACTATCCCTCAGC
AGCTGGGAGTAGTCGGTCCCCTCCAGAAACAGGCTCAGGAGTGCTCTCAATGTTTTTCCAAGGAGAAGAGACAGAAAATGAAGAGAATCTCTCATCTGAAAAAGCCTGCTCCTCTGGGAGGTTGGGCT
TCAATGATTTCTCCTCCAGTCCTGCACTGGGCCAGCCACTGCCCCCTGCACACGTAGCTGGTGGCACCTACCAGGCCTTTCCCAAAGGCCCCAACACTGAGGCCACACAGCAGGAAGGAGACACACAG
TCATATTTTTCTCACTCTGCAGGAATCCAGCATGATAAGCAGACCAGTAAAAGTGTTGCTTCTGTTGCCTGGGGTGATGCAGACAATGCTGGGGCTCATGATGCCAGTAGCTCACGATGTGAGAATGT
TGAGAACTTAGAATTCATTCAGAATCAAGAAGTTCTGCCAAGTGAGCCTGCAAGTTTGGACCCTTCCTCTCCCAGTGACCAGTTCCGACATGGGCCCCTTCCTGGACCAGCTGTGAGGCAGAGTGCTG
TGGGCCTCACCAGAGGTGAGGGGCTGAATCTCGAGGCTCCTGAGGCACCACTGCATCCCACACGATCTGACAGTGTGTCATCCAGCTATGGCAGCCAAAGCCATAGGAGTCTTCCAGGGTCAGCCAGA
TCGCAAGAGCCAGTAGGCACGTTCATTCAGCAAGAAGTAGGAAAACCTGAGCATGAAACTGCAGGAGGCTTTTTTAAGCAAATTGGTTCTTCTCCTATAGGAGGTGAGACAGATGAGACCACTGGAAA
CCAGAATTACCGGAGCAGCCTGTCCCAGCCCTCTACCCCAAGTCCCCCGAAACCTACAGGGATATTTCAGACAAGTGTAAATAGTTCTTTTGAACCAGTAAAATCCCACTTAGTTGGGGTAAAACCAG
TTGAGGCAGATCGCGCCAACGTGGTAGGTGAAGTAAGGGGGAGCCGAGACTGCCAGAAGCAGCATAGACCAGCTGCTGCTCCACCTGATGCCTCCCCAGGTAACCTGGAGCAGCCACCAGATAACATG
GAGACACTGTTTGCACCCCAGGCCTGTTCTCTGCCTCATACCACCACCACAGAAGCTGGGTATTTGCTTCCGCACACGGTGGGGCTACCTTTGGATGCTGGGCGCCCAACACCTGAGAAGAGGCCCTC
AGCCAGGGCCCAGGGGGCCACAAAGTGTGAGAGCCCAGCAACGACTTTGTGGGCACAAGATGAGCTGCCAGATTTTGGTGGCAATGTCCTTCTAGCCCCTGCTGCTCCTGCACTTTATGTTCCTGCAA
AACCTCAGCTGTTGGCAGTTGTGCAGCCTCCAGAAGAGGGGGTATCTATGCAGCAGTTGCGGAAGCCAGCTTCTGCCCAAGTTTTGCAGAGTCGAGTTGGCCTTGGTGCCTCTGAGAACCTTGAGAAC
CCTCCAAAGGTGGGAGATGAGGAAACCCTGCAGTCCCAGGCAGGTTCTGGTTATGTGAGTTTACTGTCCTCACCACCTACTGAGTCTCTGCAGAATCAGCCCGTCTTGATCGCCCAGCCTGATCAAAG
CTATAATTTGGCTCAGCCCATTAATTTTTCTGTGTCCTCACTGAATCCTAATGAGAAGAATCAGTCCTGGGGAGATGCTTTGGTGGCAGATAAATCCGCAGGAAGCAACCAGGCTCTCAGTGGTGATT
CTGGAGAACATGCTGCTTTGTCCAGGGTTCCAACAAGTGCTGTCACTGGCTTATCTCTGCCAAACAGTCTTACCCCGAGTAATGTCCCACATAGTTCTGGGTCTTCTGAAATGGTTGCTAATCAGCCT
GCCAGTTTGCTGGTTCAAACACCACCCCATCCAGTTCCAAAGAGTATGCTTCCAGAAAGTCAGAATACTCACAGTTCAGCAAAGGTCCTTCCTGAGTTTGTCAGCAGACCTACGGGAAGCACAATTGC
ATTGTCAGTTCCACCCACTCACGGTACTTCGGTATTTGGTAGTGATGAGGCAAATTCCTCCAGTAATCGGGAAGAAACTGTTGGTACTCTAGACTTGACTTTAAGTGGAGCTTCGGGAAATCCTGTGA
GAGTGTACAGCCCATCCCATCCTGATGGCCCAGCTTCCCAACAAGCCATTGCCAGTCATCCTAGACAGCCTGGGCCTGGGGCTCCTAACCCAGATCGTTTCTATCAGCAGGTGATGAAAGATGCACAA
GACCAGGCTGGCATAGAAAGAGCCCAGCCAGAGCTGGTACCTCCCCAGCCCCAGGCTTCTCTCCAGCATGTGCCCCAGGCGGCATTTCCAGAACCTTCAAATCCAGAAAGCCCTGCCATACAAGGACA
GTCCAAAAACTCAACCCACCCACCAACAAGCCCAGCCCCAGCTGAAACAGGTCAGAAGGTGCCTCCTCGGCCACCTCAGTCCTCAAGTGCATCTGCTGTGTCCACCAGCTCAAGTCAGGCAGCCGTCC
GTTCAGAGCAGCCATGGCCGCACCCACCTGCAAGTGCGTTTGGCCCACCACCTCAGGACCTGGCATCCTACTATTACTACAGGCCACTGTACGATGCTTGCCCGCCTCAGTACCCGCCGCCCTACCCT
CCAGAGGCTGGGACGGCCTCCCTTTATTACCAGGATATGTATGGCCTGTATGAACCTCGATACAGGCCCTATGACAACTCAGCACCTGCTTACACCGAGAATTACCGCTACTCGGAGCCTGAGCGACC
CAGCTCCCGAGCAAGTCACTGCTCTGACCGGCCCACTCCCAGGCAAGCATATCCTGAAGGGTACTATAATTCCAAGAGTGGATGGAGCAGTCAGAGTGATTACTATGCAAATTACTACTCGGGCCAGT
ATGATTACGGAGATCCAGGTCGCTGGGATCGCTACTATGGTTCTAGATTCAGGGATCCCCGCACTTGGGACCGAAGGTACTGGTATGATGCTGAGTATGACCCACACAGGAAGGAAAGCTATGCTTAT
GGAGACAGGCCTGAGAAATACGATGACCACTGGAGGTACGACCCTCGTTTCACAGGTAGCTTTGACGATGACACTGAGCCCCCCAGAGACCCTTATGGGGAGGAGGTGGATAGACGCAGTGTCCACAG
TGAGCACTCAGCCCGGAGCCTGCGCAGCGCACACAGTCTGCCCAGCCGCCGCAGCAGTCTCAGCTCCCATTCCCACCAGAGTCAGATTTTCAGAAGCCATAATGTGACTACTGGTTCCTTCGAGGTCC
CGCCTCCCCCAGGCTCCTTTCATGGCGATTATGCCTATGGCACCTACGGCAGCAATTTCGGCAGTGCCCATGGCTTTCCAGAGTATAGCTACCCTGCGGATACTGGCTGGCCTGCTGTGGATCAAGTT
CCATCAAGACCAACTTCTCCTGAAAAGTTTTCAGTGCCTCACATCTGTGCCAAGTTTGGTCCTGGTGGTCAGCTCATTAAAGTGATCCCCAACCTGCCTTCGGAAGGACAGCCTGCTCTGGTGGAGAT
CCACAGCATGGAGACCTTGCTGCAGCACACGCCTGAGCAGGAGGAGCTGCGCTCATTCCCAGGGCCGCTTGGCAAAGACGACACCCATAAAGTGGATGTTATTAATTTTGCCCAGAACAAGGCTACAA
AATGTTTGCAGAATGAAAATTTAATGGACAAAGAGTCTGCAAGTCTCCTTTGGAATCTCATCATTCTGCTGTGCAGACAGAATGGGACCGTGGTGGGAACAGACATCGCAGAGCTTCTGTTGCGTGAC
CACAGGACGGTGTGGCTCCCAGGGAAGTCACCCAACGAGGCTAACCTGATAGACTTCACTAACGAGGCTGTGGAGCAGGTGCAGGAGGAGGAGTCTGGTGAGGCCCAGCTCTCTTTTCTCACGGACAG
TCAGACTGCCAGCACCAGCACGCTAGAGAAGGAGACAGAGCGGTTCCGAGAGCTGCTGCTCTATGGCCGCAAGAAGGATGCTTTAGAGTCTGCAATGAAAAATGGCTTATGGGGTCACGCTCTGCTAC
TTGCAAGTAAGATGGACAGCCGGACACACGCCCGCGTCATGACCAGGTTTGCCAACAGCCTTCCGATCAATGACCCTCTGCAGACGGTCTACCAGCTCATGTCTGGGCGGATGCCTGCTGCATCCACG
TGTTGTGGGGACGAGAAGTGGGGAGATTGGAGGCCACATCTTGCTATGGTTTTGTCCAACTTGAACAACAACATGGACGTCGAGTCCAGGACCATGGCTACGATGGGCGATACCCTAGCCTCCAAAGG
CCTCTTAGATGCTGCACACTTCTGCTACCTTATGGCCCAGGTTGGATTTGGGGTTTATACAAAGAAAACTACAAAACTTGTCTTGATTGGATCAAATCACAGTTTGCCGTTTTTAAAGTTTGCCACAA
ACGAGGCTATTCAGAGGACAGAAGCCTACGAATATGCCCAGTCACTTGGGGCCCAGACCAGCGCCTTACCTCATTTCCAGGTGTTTAAGTTTATCTACTCCTGCCGCCTGGCTGAGATGGGGCTCGCG
ACGCAGGCCTTCCATTACTGTGAGGTGATCGCCAAGAGCATCCTGACACAGCCCGCCGCATACTCTGCAGTGCTCATCAGCCAGCTGGTACAGATGTCTTCCCAGTTGCGCCTCTTCGATCCTCAGCT
GAGGGAAAAACCGGAGGAGGAGTCCTTTATTGAGCCTGCCTGGCTGGTGCAGCTGCAGCGTGTGGAGAGGCAGATCCAGGAGGGTGCTGTGCCATGGAATCAGGATGGGGCCGACCCCCAGGAGTGCC
CCAGCACTCCAGGCTCTGAGGTGGATCAGTTGGATGCCCCAGTGCAGGGTCAGCCATCGGGGTTGGGTGCTGACCAGCCCCTGCTGATGCCGAGCACCGAGCCCTCCAGCCAGGGTGTGCATCTGCTG
GCCTCAGCTCCACAGATGCTCCCTGATGGCCAGCTGGCCCACTCTGCCAGGGTGCCGATGTTCCCAGTGTCACCACCCACAGGAGCCCTGGAGTCAGGTCCTGGCTGTGGACCCCCAGTGTCTGCAGT
TGGCTTCTCAGAGCCCTCCAGACCTGATCCTGCAGCTTTGTACACGGGGCTGGGGTTGCCACCTGGTGTACCATCTCTCCAGGAAAGTGGCTCCCTGCTCCAGGAGTCCAGAAGCCTGGACCCAGGAA
TGGTGCCACAGGATGCGCCTGTTGGGAATGTGTTTCCCAAGCCAAGTGAGGAGGACTTCGGTGGAAACTTTGCTGACCTGGGCTCCTCTAGGACAGCACAGGATGCAGAGACTCCTCCAGCCTGGGAT
CCCACCAGCTCAGCGTCAGCACAATCTGCTTCTTCTCTGTCACCTGCTTCTGAAACAAAGAGGCCTGCACATGTGGCCAGAAAGGAGACCAAGGAACCCAAGAAGAGTGAGTCCTGGTTCTCTCGTTG
GCTACCTGGGAAAAAAAGGACAGAAGCTTACTTGCCAGATGACAAGAACAAGTCGATTGTTTGGGATGAAAAGAAGAACCAGTGGGTGAATTTGAATGAGCCAGAGGAGGAGAAGAAGGCTCCACCCC
CACCTCCAACATCGCTGCCCAGGGCTTCACATGTGGCTCCCCCTGGGCTTACAGGCCCTCCCACAGCCTCCGTGAACATGTTTTCTAGAAAAGCAGGCGGATCCAGAGCTCGCTATGTGGATGTGTTG
AACCCAAGTGGGGCCTCGCGGGGTGAGCCAGCTCCTGCTCCTGCAGATTTCTTTGCTCCGCTTGCTCCCCTGCCGATTCCTTCTAACCTGTTTACACCAAGCCCAGATGCCGAGGAACCACATCTTGC
TGAAGGAGCTGGCAGGGTAGGACCAGGGCCAGCTGGGGCTCAGGCCAATTTAGAGCCCACCACAGAACCCAAGGCTCCTGGTGACCACTGCCCTGCAGGGAATCCTCCCAGTGGAACTGTGCCCTTCT
ATAGCCCTTCCCAGTTGGCACAGGCCTCCACCAGCTCAGGGAGCTCAAGGCCAGGGAGGATTGGCCAGAGGAAATACCCAGCACTGAACTAGAGTCATCCCCTTTTGGATTTGCACTTGGAACCCTGA
GATGAATGTTCTCCACCATGAACTGGACGGACTGCCTAGGGTCTCCTGCCCCCAGTGGACATGGCAGTACCTCAGAGCCGGTCATACTGTGCATCTCCTCCTTACCGTCCATCTCTATGAATTATTGC
AAAATTAATTCCATGGTTCCTTTCAGATGCTGGATAGAGTGAATCTGATTCATTTTTACACGAAAGCACGGTGTTCCTTTCCTAGTAACTTAGGGTGATCTGAGAATGTGACGCTCTGAGCCTCTTGA
CCACATCCCATGAAGCAAGGCTGGATGGGGGTTGCCACATGAGGCGGTCGATGCTCCTGGGAAACCAGGGCCTTGCTCCAACCACCTGACAATTATTGCAAATGAACCTACAATTCCTTGAGGATGTT
GAGAAAAAAGACCTAAGAGGAGCCTCGGCCTCGCACCTTGCAGGTGCTCACAGCTGGGGAGTGCATTTCTCTCTGGTAATGAAGATATTTCCAGCCTAATTGGGATGCCTGACCTGGTCACTAGGAGG
AGCCCCAGAGAGCTGATGTAACCAGCCAGTGTGGGTCTCCCTTCCTGAGTGTTAGCTTGCACAGACACCTGGCCAAGGAGCTGTGCAGGCTGCACCCATGTGCCGTGCCCCTTGGTTGGTGTGCACCA
ACCAAGTTGGTACATCTTGAAGGGAGGGGCTTGGAGTTTTCCCGACAGACCTCTGGAGCCTTGGTCTCTGCCCCAAGTGGAGACCTTCAGTAGCTTCAGGCCCACCAGGCCTCCCACTCTTCCCAGAC
AGCTTTAAGGCTTCACCGACTGTTCTTAAAACTCCTTATTCTTGTTGATCTAGAGACTGAAGGAAAGGGGAGATTTAAATATTTATAAAAATCAGTAGGTAATAATTTGGGTAGGTCCTGCTGGGGGA
ACATAAACGGTTTGGCATTTTTGAGTTAAGTGTAGAGATTGTAGAATGTGGAATTAGCACAGCCCTTCCCAGTTTTCTAGTTTACTTCATCATCTAGGAAAGACCCCCAGAAAGTTTCCAGACTGCTT
CCCAGGCCAGTGTGCCTGGACCCACCAGTTCCCACCACTGAGAGGTGTGCCTGCAGGGACCCTCGCCCTCCAGAGCATCCCTGCTCAGGATGTGACTGCCTGCCACTTGATCCAGGAAGCTCCCTCCG
AGGTGGGAGCTGCTATTTTTCCTAAATGCAAATTGTTAAATAAACTATTTTGGGCTCTCAAGTA

hide sequence

RefSeq Acc Id:

XM_021734344 ⟹ XP_021590019

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	201,999,577 - 202,031,070 (-)	NCBI
SpeTri2.0	NW_004936669	1,344,019 - 1,375,483 (+)	NCBI

Sequence:

show sequence

TGCCTCAGCCCTCAAGTTGCTGGGATTACAGCTCAGATTAAGGAAAAAACTCTACCCTGCCTTC
TCTGTAAGCAGCATCTCCTTGTGCAAGAGGTCAATTATGCAGCCACCACCCCAGGCAGTCCCATCTGGCATGGCTGGACCTCCTCCGGCTGGGAATCCTCGGAGCATGTTCTGGGCTAACAGCCCTCA
CAGGAGACCAGCCAGTAATAACATACCAGTGACTCCAATAAGTTTCCCATTGCAGCCAGTAACAGATCCGTTTGCTTTTAGTAGACAGACGCTCCAAAATACACCATTGGGTGGTTCCTCTAAAAGTG
ACCTACCTATTTTGCATAGCTCAACCCTCCCAGCATTTTCTCAATGGCCTGGTTTGCCTGTGCCTCACACAAATGCCGGGGATAGCTCCCAAGGACCCTACGAGCCTCTGCCAGGACCTCTGTCACAG
CCTGGGCCAGAGGCCAGTCTCCTTCCTACTACATCCATCTCTTCTCTGCTGCCTGGGCCTGAGATGAACAGGAATTCGGAGGTTGGCTCCACCTCAGGGCCTGAAGTTCAGACTCTGCCACATCCACC
TCATTACATTCCAGGAATGGGTCCTGACCAGTCTCAGGGGAGCCATCTGCATGGGAGTGGGTCTGGACCTGATCAACCCTTGAATAAGTATACCCCACAAGATGGTGCTGTGGCCCCAGCAGCATCCC
CTTTATTCTCCCAGCCTCAACAGATGCCAGGTCAGGGGGCACCAGTGTGGGGAAGCCCACAGCCCTCCCATCAGCACCACTGCCCCTGCCCAGCAGGACTTGTTCAGAGCATAGGACCCCAGGCTCCC
AGTGCTCCCCATTTTCCTGCTCCTTCCAACCTGCACCATGGTCTTGGCCAGGAGTCCCATAGCCCACTTGTGTCTCCTCCAGAACATTTGGCTGCTGGTGGAGGGAATGAATCAGTCCGCCTGCCTAG
TGGAAACCACTCAGCAAGTAACTTGCATCCTGAACATGCGCTGGGGCAGAATTCCAGAAGCAGGAGTACATGGGCAAGCCAGGAATTCAGACAGAATCCAGCAGCGAATAAAGAGCATTTGCCAGACC
CTGCCATTGTCAATACTCTCACTCAGGGAAATAGCCCCGAAAACCACGTGCACTATCCCTCAGCAGCTGGGAGTAGTCGGTCCCCTCCAGAAACAGGCTCAGGAGTGCTCTCAATGTTTTTCCAAGGA
GAAGAGACAGAAAATGAAGAGAATCTCTCATCTGAAAAAGCCTGCTCCTCTGGGAGGTTGGGCTTCAATGATTTCTCCTCCAGTCCTGCACTGGGCCAGCCACTGCCCCCTGCACACGTAGCTGGTGG
CACCTACCAGGCCTTTCCCAAAGGCCCCAACACTGAGGCCACACAGCAGGAAGGAGACACACAGTCATATTTTTCTCACTCTGCAGGAATCCAGCATGATAAGCAGACCAGTAAAAGTGTTGCTTCTG
TTGCCTGGGGTGATGCAGACAATGCTGGGGCTCATGATGCCAGTAGCTCACGATGTGAGAATGTTGAGAACTTAGAATTCATTCAGAATCAAGAAGTTCTGCCAAGTGAGCCTGCAAGTTTGGACCCT
TCCTCTCCCAGTGACCAGTTCCGACATGGGCCCCTTCCTGGACCAGCTGTGAGGCAGAGTGCTGTGGGCCTCACCAGAGGTGAGGGGCTGAATCTCGAGGCTCCTGAGGCACCACTGCATCCCACACG
ATCTGACAGTGTGTCATCCAGCTATGGCAGCCAAAGCCATAGGAGTCTTCCAGGGTCAGCCAGATCGCAAGAGCCAGTAGGCACGTTCATTCAGCAAGAAGTAGGAAAACCTGAGCATGAAACTGCAG
GAGGCTTTTTTAAGCAAATTGGTTCTTCTCCTATAGGAGGTGAGACAGATGAGACCACTGGAAACCAGAATTACCGGAGCAGCCTGTCCCAGCCCTCTACCCCAAGTCCCCCGAAACCTACAGGGATA
TTTCAGACAAGTGTAAATAGTTCTTTTGAACCAGTAAAATCCCACTTAGTTGGGGTAAAACCAGTTGAGGCAGATCGCGCCAACGTGGTAGGTGAAGTAAGGGGGAGCCGAGACTGCCAGAAGCAGCA
TAGACCAGCTGCTGCTCCACCTGATGCCTCCCCAGGTAACCTGGAGCAGCCACCAGATAACATGGAGACACTGTTTGCACCCCAGGCCTGTTCTCTGCCTCATACCACCACCACAGAAGCTGGGTATT
TGCTTCCGCACACGGTGGGGCTACCTTTGGATGCTGGGCGCCCAACACCTGAGAAGAGGCCCTCAGCCAGGGCCCAGGGGGCCACAAAGTGTGAGAGCCCAGCAACGACTTTGTGGGCACAAGATGAG
CTGCCAGATTTTGGTGGCAATGTCCTTCTAGCCCCTGCTGCTCCTGCACTTTATGTTCCTGCAAAACCTCAGCTGTTGGCAGTTGTGCAGCCTCCAGAAGAGGGGGTATCTATGCAGCAGTTGCGGAA
GCCAGCTTCTGCCCAAGTTTTGCAGAGTCGAGTTGGCCTTGGTGCCTCTGAGAACCTTGAGAACCCTCCAAAGGTGGGAGATGAGGAAACCCTGCAGTCCCAGGCAGGTTCTGGTTATGTGAGTTTAC
TGTCCTCACCACCTACTGAGTCTCTGCAGAATCAGCCCGTCTTGATCGCCCAGCCTGATCAAAGCTATAATTTGGCTCAGCCCATTAATTTTTCTGTGTCCTCACTGAATCCTAATGAGAAGAATCAG
TCCTGGGGAGATGCTTTGGTGGCAGATAAATCCGCAGGAAGCAACCAGGCTCTCAGTGGTGATTCTGGAGAACATGCTGCTTTGTCCAGGGTTCCAACAAGTGCTGTCACTGGCTTATCTCTGCCAAA
CAGTCTTACCCCGAGTAATGTCCCACATAGTTCTGGGTCTTCTGAAATGGTTGCTAATCAGCCTGCCAGTTTGCTGGTTCAAACACCACCCCATCCAGTTCCAAAGAGTATGCTTCCAGAAAGTCAGA
ATACTCACAGTTCAGCAAAGGTCCTTCCTGAGTTTGTCAGCAGACCTACGGGAAGCACAATTGCATTGTCAGTTCCACCCACTCACGGTACTTCGGTATTTGGTAGTGATGAGGCAAATTCCTCCAGT
AATCGGGAAGAAACTGTTGGTACTCTAGACTTGACTTTAAGTGGAGCTTCGGGAAATCCTGTGAGAGTGTACAGCCCATCCCATCCTGATGGCCCAGCTTCCCAACAAGCCATTGCCAGTCATCCTAG
ACAGCCTGGGCCTGGGGCTCCTAACCCAGATCGTTTCTATCAGCAGGTGATGAAAGATGCACAAGACCAGGCTGGCATAGAAAGAGCCCAGCCAGAGCTGGTACCTCCCCAGCCCCAGGCTTCTCTCC
AGCATGTGCCCCAGGCGGCATTTCCAGAACCTTCAAATCCAGAAAGCCCTGCCATACAAGGACAGTCCAAAAACTCAACCCACCCACCAACAAGCCCAGCCCCAGCTGAAACAGGTCAGAAGGTGCCT
CCTCGGCCACCTCAGTCCTCAAGTGCATCTGCTGTGTCCACCAGCTCAAGTCAGGCAGCCGTCCGTTCAGAGCAGCCATGGCCGCACCCACCTGCAAGTGCGTTTGGCCCACCACCTCAGGACCTGGC
ATCCTACTATTACTACAGGCCACTGTACGATGCTTGCCCGCCTCAGTACCCGCCGCCCTACCCTCCAGAGGCTGGGACGGCCTCCCTTTATTACCAGGATATGTATGGCCTGTATGAACCTCGATACA
GGCCCTATGACAACTCAGCACCTGCTTACACCGAGAATTACCGCTACTCGGAGCCTGAGCGACCCAGCTCCCGAGCAAGTCACTGCTCTGACCGGCCCACTCCCAGGCAAGCATATCCTGAAGGGTAC
TATAATTCCAAGAGTGGATGGAGCAGTCAGAGTGATTACTATGCAAATTACTACTCGGGCCAGTATGATTACGGAGATCCAGGTCGCTGGGATCGCTACTATGGTTCTAGATTCAGGGATCCCCGCAC
TTGGGACCGAAGGCCTGAGAAATACGATGACCACTGGAGGTACGACCCTCGTTTCACAGGTAGCTTTGACGATGACACTGAGCCCCCCAGAGACCCTTATGGGGAGGAGGTGGATAGACGCAGTGTCC
ACAGTGAGCACTCAGCCCGGAGCCTGCGCAGCGCACACAGTCTGCCCAGCCGCCGCAGCAGTCTCAGCTCCCATTCCCACCAGAGTCAGATTTTCAGAAGCCATAATGTGACTACTGGTTCCTTCGAG
GTCCCGCCTCCCCCAGGCTCCTTTCATGGCGATTATGCCTATGGCACCTACGGCAGCAATTTCGGCAGTGCCCATGGCTTTCCAGAGTATAGCTACCCTGCGGATACTGGCTGGCCTGCTGTGGATCA
AGTTCCATCAAGACCAACTTCTCCTGAAAAGTTTTCAGTGCCTCACATCTGTGCCAAGTTTGGTCCTGGTGGTCAGCTCATTAAAGTGATCCCCAACCTGCCTTCGGAAGGACAGCCTGCTCTGGTGG
AGATCCACAGCATGGAGACCTTGCTGCAGCACACGCCTGAGCAGGAGGAGCTGCGCTCATTCCCAGGGCCGCTTGGCAAAGACGACACCCATAAAGTGGATGTTATTAATTTTGCCCAGAACAAGGCT
ACAAAATGTTTGCAGAATGAAAATTTAATGGACAAAGAGTCTGCAAGTCTCCTTTGGAATCTCATCATTCTGCTGTGCAGACAGAATGGGACCGTGGTGGGAACAGACATCGCAGAGCTTCTGTTGCG
TGACCACAGGACGGTGTGGCTCCCAGGGAAGTCACCCAACGAGGCTAACCTGATAGACTTCACTAACGAGGCTGTGGAGCAGGTGCAGGAGGAGGAGTCTGGTGAGGCCCAGCTCTCTTTTCTCACGG
ACAGTCAGACTGCCAGCACCAGCACGCTAGAGAAGGAGACAGAGCGGTTCCGAGAGCTGCTGCTCTATGGCCGCAAGAAGGATGCTTTAGAGTCTGCAATGAAAAATGGCTTATGGGGTCACGCTCTG
CTACTTGCAAGTAAGATGGACAGCCGGACACACGCCCGCGTCATGACCAGGTTTGCCAACAGCCTTCCGATCAATGACCCTCTGCAGACGGTCTACCAGCTCATGTCTGGGCGGATGCCTGCTGCATC
CACGTGTTGTGGGGACGAGAAGTGGGGAGATTGGAGGCCACATCTTGCTATGGTTTTGTCCAACTTGAACAACAACATGGACGTCGAGTCCAGGACCATGGCTACGATGGGCGATACCCTAGCCTCCA
AAGGCCTCTTAGATGCTGCACACTTCTGCTACCTTATGGCCCAGGTTGGATTTGGGGTTTATACAAAGAAAACTACAAAACTTGTCTTGATTGGATCAAATCACAGTTTGCCGTTTTTAAAGTTTGCC
ACAAACGAGGCTATTCAGAGGACAGAAGCCTACGAATATGCCCAGTCACTTGGGGCCCAGACCAGCGCCTTACCTCATTTCCAGGTGTTTAAGTTTATCTACTCCTGCCGCCTGGCTGAGATGGGGCT
CGCGACGCAGGCCTTCCATTACTGTGAGGTGATCGCCAAGAGCATCCTGACACAGCCCGCCGCATACTCTGCAGTGCTCATCAGCCAGCTGGTACAGATGTCTTCCCAGTTGCGCCTCTTCGATCCTC
AGCTGAGGGAAAAACCGGAGGAGGAGTCCTTTATTGAGCCTGCCTGGCTGGTGCAGCTGCAGCGTGTGGAGAGGCAGATCCAGGAGGGTGCTGTGCCATGGAATCAGGATGGGGCCGACCCCCAGGAG
TGCCCCAGCACTCCAGGCTCTGAGGTGGATCAGTTGGATGCCCCAGTGCAGGGTCAGCCATCGGGGTTGGGTGCTGACCAGCCCCTGCTGATGCCGAGCACCGAGCCCTCCAGCCAGGGTGTGCATCT
GCTGGCCTCAGCTCCACAGATGCTCCCTGATGGCCAGCTGGCCCACTCTGCCAGGGTGCCGATGTTCCCAGTGTCACCACCCACAGGAGCCCTGGAGTCAGGTCCTGGCTGTGGACCCCCAGTGTCTG
CAGTTGGCTTCTCAGAGCCCTCCAGACCTGATCCTGCAGCTTTGTACACGGGGCTGGGGTTGCCACCTGGTGTACCATCTCTCCAGGAAAGTGGCTCCCTGCTCCAGGAGTCCAGAAGCCTGGACCCA
GGAATGGTGCCACAGGATGCGCCTGTTGGGAATGTGTTTCCCAAGCCAAGTGAGGAGGACTTCGGTGGAAACTTTGCTGACCTGGGCTCCTCTAGGACAGCACAGGATGCAGAGACTCCTCCAGCCTG
GGATCCCACCAGCTCAGCGTCAGCACAATCTGCTTCTTCTCTGTCACCTGCTTCTGAAACAAAGAGGCCTGCACATGTGGCCAGAAAGGAGACCAAGGAACCCAAGAAGAGTGAGTCCTGGTTCTCTC
GTTGGCTACCTGGGAAAAAAAGGACAGAAGCTTACTTGCCAGATGACAAGAACAAGTCGATTGTTTGGGATGAAAAGAAGAACCAGTGGGTGAATTTGAATGAGCCAGAGGAGGAGAAGAAGGCTCCA
CCCCCACCTCCAACATCGCTGCCCAGGGCTTCACATGTGGCTCCCCCTGGGCTTACAGGCCCTCCCACAGCCTCCGTGAACATGTTTTCTAGAAAAGCAGGCGGATCCAGAGCTCGCTATGTGGATGT
GTTGAACCCAAGTGGGGCCTCGCGGGGTGAGCCAGCTCCTGCTCCTGCAGATTTCTTTGCTCCGCTTGCTCCCCTGCCGATTCCTTCTAACCTGTTTACACCAAGCCCAGATGCCGAGGAACCACATC
TTGCTGAAGGAGCTGGCAGGGTAGGACCAGGGCCAGCTGGGGCTCAGGCCAATTTAGAGCCCACCACAGAACCCAAGGCTCCTGGTGACCACTGCCCTGCAGGGAATCCTCCCAGTGGAACTGTGCCC
TTCTATAGCCCTTCCCAGTTGGCACAGGCCTCCACCAGCTCAGGGAGCTCAAGGCCAGGGAGGATTGGCCAGAGGAAATACCCAGCACTGAACTAGAGTCATCCCCTTTTGGATTTGCACTTGGAACC
CTGAGATGAATGTTCTCCACCATGAACTGGACGGACTGCCTAGGGTCTCCTGCCCCCAGTGGACATGGCAGTACCTCAGAGCCGGTCATACTGTGCATCTCCTCCTTACCGTCCATCTCTATGAATTA
TTGCAAAATTAATTCCATGGTTCCTTTCAGATGCTGGATAGAGTGAATCTGATTCATTTTTACACGAAAGCACGGTGTTCCTTTCCTAGTAACTTAGGGTGATCTGAGAATGTGACGCTCTGAGCCTC
TTGACCACATCCCATGAAGCAAGGCTGGATGGGGGTTGCCACATGAGGCGGTCGATGCTCCTGGGAAACCAGGGCCTTGCTCCAACCACCTGACAATTATTGCAAATGAACCTACAATTCCTTGAGGA
TGTTGAGAAAAAAGACCTAAGAGGAGCCTCGGCCTCGCACCTTGCAGGTGCTCACAGCTGGGGAGTGCATTTCTCTCTGGTAATGAAGATATTTCCAGCCTAATTGGGATGCCTGACCTGGTCACTAG
GAGGAGCCCCAGAGAGCTGATGTAACCAGCCAGTGTGGGTCTCCCTTCCTGAGTGTTAGCTTGCACAGACACCTGGCCAAGGAGCTGTGCAGGCTGCACCCATGTGCCGTGCCCCTTGGTTGGTGTGC
ACCAACCAAGTTGGTACATCTTGAAGGGAGGGGCTTGGAGTTTTCCCGACAGACCTCTGGAGCCTTGGTCTCTGCCCCAAGTGGAGACCTTCAGTAGCTTCAGGCCCACCAGGCCTCCCACTCTTCCC
AGACAGCTTTAAGGCTTCACCGACTGTTCTTAAAACTCCTTATTCTTGTTGATCTAGAGACTGAAGGAAAGGGGAGATTTAAATATTTATAAAAATCAGTAGGTAATAATTTGGGTAGGTCCTGCTGG
GGGAACATAAACGGTTTGGCATTTTTGAGTTAAGTGTAGAGATTGTAGAATGTGGAATTAGCACAGCCCTTCCCAGTTTTCTAGTTTACTTCATCATCTAGGAAAGACCCCCAGAAAGTTTCCAGACT
GCTTCCCAGGCCAGTGTGCCTGGACCCACCAGTTCCCACCACTGAGAGGTGTGCCTGCAGGGACCCTCGCCCTCCAGAGCATCCCTGCTCAGGATGTGACTGCCTGCCACTTGATCCAGGAAGCTCCC
TCCGAGGTGGGAGCTGCTATTTTTCCTAAATGCAAATTGTTAAATAAACTATTTTGGGCTCTCAAGTA

hide sequence

RefSeq Acc Id:

XM_040286637 ⟹ XP_040142571

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	201,999,577 - 202,031,070 (-)	NCBI


Protein RefSeqs	XP_005336988	(Get FASTA)	NCBI Sequence Viewer
	XP_021590019	(Get FASTA)	NCBI Sequence Viewer
	XP_040142571	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000012664.3
GenBank Protein	KAG3288363	(Get FASTA)	NCBI Sequence Viewer
	KAG3288364	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005336988 ⟸ XM_005336931
- Peptide Label:	isoform X1
- UniProtKB:	I3MMC1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPPPQAVPSGMAGPPPAGNPRSMFWANSPHRRPASNNIPVTPISFPLQPVTDPFAFSRQTLQNTPLGGSSKSDLPILHSSTLPAFSQWPGLPVPHTNAGDSSQGPYEPLPGPLSQPGPEASLLPTTS ISSLLPGPEMNRNSEVGSTSGPEVQTLPHPPHYIPGMGPDQSQGSHLHGSGSGPDQPLNKYTPQDGAVAPAASPLFSQPQQMPGQGAPVWGSPQPSHQHHCPCPAGLVQSIGPQAPSAPHFPAPSNLH HGLGQESHSPLVSPPEHLAAGGGNESVRLPSGNHSASNLHPEHALGQNSRSRSTWASQEFRQNPAANKEHLPDPAIVNTLTQGNSPENHVHYPSAAGSSRSPPETGSGVLSMFFQGEETENEENLSSE KACSSGRLGFNDFSSSPALGQPLPPAHVAGGTYQAFPKGPNTEATQQEGDTQSYFSHSAGIQHDKQTSKSVASVAWGDADNAGAHDASSSRCENVENLEFIQNQEVLPSEPASLDPSSPSDQFRHGPL PGPAVRQSAVGLTRGEGLNLEAPEAPLHPTRSDSVSSSYGSQSHRSLPGSARSQEPVGTFIQQEVGKPEHETAGGFFKQIGSSPIGGETDETTGNQNYRSSLSQPSTPSPPKPTGIFQTSVNSSFEPV KSHLVGVKPVEADRANVVGEVRGSRDCQKQHRPAAAPPDASPGNLEQPPDNMETLFAPQACSLPHTTTTEAGYLLPHTVGLPLDAGRPTPEKRPSARAQGATKCESPATTLWAQDELPDFGGNVLLAP AAPALYVPAKPQLLAVVQPPEEGVSMQQLRKPASAQVLQSRVGLGASENLENPPKVGDEETLQSQAGSGYVSLLSSPPTESLQNQPVLIAQPDQSYNLAQPINFSVSSLNPNEKNQSWGDALVADKSA GSNQALSGDSGEHAALSRVPTSAVTGLSLPNSLTPSNVPHSSGSSEMVANQPASLLVQTPPHPVPKSMLPESQNTHSSAKVLPEFVSRPTGSTIALSVPPTHGTSVFGSDEANSSSNREETVGTLDLT LSGASGNPVRVYSPSHPDGPASQQAIASHPRQPGPGAPNPDRFYQQVMKDAQDQAGIERAQPELVPPQPQASLQHVPQAAFPEPSNPESPAIQGQSKNSTHPPTSPAPAETGQKVPPRPPQSSSASAV STSSSQAAVRSEQPWPHPPASAFGPPPQDLASYYYYRPLYDACPPQYPPPYPPEAGTASLYYQDMYGLYEPRYRPYDNSAPAYTENYRYSEPERPSSRASHCSDRPTPRQAYPEGYYNSKSGWSSQSD YYANYYSGQYDYGDPGRWDRYYGSRFRDPRTWDRRYWYDAEYDPHRKESYAYGDRPEKYDDHWRYDPRFTGSFDDDTEPPRDPYGEEVDRRSVHSEHSARSLRSAHSLPSRRSSLSSHSHQSQIFRSH NVTTGSFEVPPPPGSFHGDYAYGTYGSNFGSAHGFPEYSYPADTGWPAVDQVPSRPTSPEKFSVPHICAKFGPGGQLIKVIPNLPSEGQPALVEIHSMETLLQHTPEQEELRSFPGPLGKDDTHKVDV INFAQNKATKCLQNENLMDKESASLLWNLIILLCRQNGTVVGTDIAELLLRDHRTVWLPGKSPNEANLIDFTNEAVEQVQEEESGEAQLSFLTDSQTASTSTLEKETERFRELLLYGRKKDALESAMK NGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMATMGDTLASKGLLDAAHFCYLMAQVGFGVYTKKTTKLVLIGSNH SLPFLKFATNEAIQRTEAYEYAQSLGAQTSALPHFQVFKFIYSCRLAEMGLATQAFHYCEVIAKSILTQPAAYSAVLISQLVQMSSQLRLFDPQLREKPEEESFIEPAWLVQLQRVERQIQEGAVPWN QDGADPQECPSTPGSEVDQLDAPVQGQPSGLGADQPLLMPSTEPSSQGVHLLASAPQMLPDGQLAHSARVPMFPVSPPTGALESGPGCGPPVSAVGFSEPSRPDPAALYTGLGLPPGVPSLQESGSLL QESRSLDPGMVPQDAPVGNVFPKPSEEDFGGNFADLGSSRTAQDAETPPAWDPTSSASAQSASSLSPASETKRPAHVARKETKEPKKSESWFSRWLPGKKRTEAYLPDDKNKSIVWDEKKNQWVNLNE PEEEKKAPPPPPTSLPRASHVAPPGLTGPPTASVNMFSRKAGGSRARYVDVLNPSGASRGEPAPAPADFFAPLAPLPIPSNLFTPSPDAEEPHLAEGAGRVGPGPAGAQANLEPTTEPKAPGDHCPAG NPPSGTVPFYSPSQLAQASTSSGSSRPGRIGQRKYPALN hide sequence

RefSeq Acc Id:

XP_021590019 ⟸ XM_021734344

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQPPPQAVPSGMAGPPPAGNPRSMFWANSPHRRPASNNIPVTPISFPLQPVTDPFAFSRQTLQN
TPLGGSSKSDLPILHSSTLPAFSQWPGLPVPHTNAGDSSQGPYEPLPGPLSQPGPEASLLPTTSISSLLPGPEMNRNSEVGSTSGPEVQTLPHPPHYIPGMGPDQSQGSHLHGSGSGPDQPLNKYTPQ
DGAVAPAASPLFSQPQQMPGQGAPVWGSPQPSHQHHCPCPAGLVQSIGPQAPSAPHFPAPSNLHHGLGQESHSPLVSPPEHLAAGGGNESVRLPSGNHSASNLHPEHALGQNSRSRSTWASQEFRQNP
AANKEHLPDPAIVNTLTQGNSPENHVHYPSAAGSSRSPPETGSGVLSMFFQGEETENEENLSSEKACSSGRLGFNDFSSSPALGQPLPPAHVAGGTYQAFPKGPNTEATQQEGDTQSYFSHSAGIQHD
KQTSKSVASVAWGDADNAGAHDASSSRCENVENLEFIQNQEVLPSEPASLDPSSPSDQFRHGPLPGPAVRQSAVGLTRGEGLNLEAPEAPLHPTRSDSVSSSYGSQSHRSLPGSARSQEPVGTFIQQE
VGKPEHETAGGFFKQIGSSPIGGETDETTGNQNYRSSLSQPSTPSPPKPTGIFQTSVNSSFEPVKSHLVGVKPVEADRANVVGEVRGSRDCQKQHRPAAAPPDASPGNLEQPPDNMETLFAPQACSLP
HTTTTEAGYLLPHTVGLPLDAGRPTPEKRPSARAQGATKCESPATTLWAQDELPDFGGNVLLAPAAPALYVPAKPQLLAVVQPPEEGVSMQQLRKPASAQVLQSRVGLGASENLENPPKVGDEETLQS
QAGSGYVSLLSSPPTESLQNQPVLIAQPDQSYNLAQPINFSVSSLNPNEKNQSWGDALVADKSAGSNQALSGDSGEHAALSRVPTSAVTGLSLPNSLTPSNVPHSSGSSEMVANQPASLLVQTPPHPV
PKSMLPESQNTHSSAKVLPEFVSRPTGSTIALSVPPTHGTSVFGSDEANSSSNREETVGTLDLTLSGASGNPVRVYSPSHPDGPASQQAIASHPRQPGPGAPNPDRFYQQVMKDAQDQAGIERAQPEL
VPPQPQASLQHVPQAAFPEPSNPESPAIQGQSKNSTHPPTSPAPAETGQKVPPRPPQSSSASAVSTSSSQAAVRSEQPWPHPPASAFGPPPQDLASYYYYRPLYDACPPQYPPPYPPEAGTASLYYQD
MYGLYEPRYRPYDNSAPAYTENYRYSEPERPSSRASHCSDRPTPRQAYPEGYYNSKSGWSSQSDYYANYYSGQYDYGDPGRWDRYYGSRFRDPRTWDRRPEKYDDHWRYDPRFTGSFDDDTEPPRDPY
GEEVDRRSVHSEHSARSLRSAHSLPSRRSSLSSHSHQSQIFRSHNVTTGSFEVPPPPGSFHGDYAYGTYGSNFGSAHGFPEYSYPADTGWPAVDQVPSRPTSPEKFSVPHICAKFGPGGQLIKVIPNL
PSEGQPALVEIHSMETLLQHTPEQEELRSFPGPLGKDDTHKVDVINFAQNKATKCLQNENLMDKESASLLWNLIILLCRQNGTVVGTDIAELLLRDHRTVWLPGKSPNEANLIDFTNEAVEQVQEEES
GEAQLSFLTDSQTASTSTLEKETERFRELLLYGRKKDALESAMKNGLWGHALLLASKMDSRTHARVMTRFANSLPINDPLQTVYQLMSGRMPAASTCCGDEKWGDWRPHLAMVLSNLNNNMDVESRTM
ATMGDTLASKGLLDAAHFCYLMAQVGFGVYTKKTTKLVLIGSNHSLPFLKFATNEAIQRTEAYEYAQSLGAQTSALPHFQVFKFIYSCRLAEMGLATQAFHYCEVIAKSILTQPAAYSAVLISQLVQM
SSQLRLFDPQLREKPEEESFIEPAWLVQLQRVERQIQEGAVPWNQDGADPQECPSTPGSEVDQLDAPVQGQPSGLGADQPLLMPSTEPSSQGVHLLASAPQMLPDGQLAHSARVPMFPVSPPTGALES
GPGCGPPVSAVGFSEPSRPDPAALYTGLGLPPGVPSLQESGSLLQESRSLDPGMVPQDAPVGNVFPKPSEEDFGGNFADLGSSRTAQDAETPPAWDPTSSASAQSASSLSPASETKRPAHVARKETKE
PKKSESWFSRWLPGKKRTEAYLPDDKNKSIVWDEKKNQWVNLNEPEEEKKAPPPPPTSLPRASHVAPPGLTGPPTASVNMFSRKAGGSRARYVDVLNPSGASRGEPAPAPADFFAPLAPLPIPSNLFT
PSPDAEEPHLAEGAGRVGPGPAGAQANLEPTTEPKAPGDHCPAGNPPSGTVPFYSPSQLAQASTSSGSSRPGRIGQRKYPALN

hide sequence

RefSeq Acc Id:	XP_040142571 ⟸ XM_040286637
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000012664 ⟸ ENSSTOT00000014137

Protein Domains

Ancestral coatomer element 1 Sec16/Sec31 Sec16 central conserved

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000014119	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000014137.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.1030	UniProtKB/TrEMBL
InterPro	ACE1_Sec16_Sec31	UniProtKB/TrEMBL
	Sec16_CCD	UniProtKB/TrEMBL
NCBI Gene	Sec16a	ENTREZGENE
PANTHER	PROTEIN TRANSPORT PROTEIN SEC16A	UniProtKB/TrEMBL
	PTHR13402	UniProtKB/TrEMBL
Pfam	Sec16	UniProtKB/TrEMBL
	Sec16_C	UniProtKB/TrEMBL
UniProt	I3MMC1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar