Sec16a (SEC16 homolog A, endoplasmic reticulum export factor) - Rat Genome Database

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Gene: Sec16a (SEC16 homolog A, endoplasmic reticulum export factor) Chinchilla lanigera
Analyze
Symbol: Sec16a
Name: SEC16 homolog A, endoplasmic reticulum export factor
RGD ID: 8901273
Description: INVOLVED IN endoplasmic reticulum organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi to plasma membrane transport (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SEC16 homolog A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,273,581 - 4,303,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,272,623 - 4,304,314 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sec16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,273,581 - 4,303,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,272,623 - 4,304,314 (+)NCBIChiLan1.0ChiLan1.0
SEC16A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,440,105 - 136,484,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,440,096 - 136,483,759 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,334,557 - 139,378,235 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,454,369 - 138,497,328 (-)NCBINCBI36Build 36hg18NCBI36
Celera9109,849,015 - 109,891,964 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,793,635 - 108,837,485 (-)NCBIHuRef
CHM1_19139,482,991 - 139,526,945 (-)NCBICHM1_1
T2T-CHM13v2.09148,669,197 - 148,713,859 (-)NCBIT2T-CHM13v2.0
Sec16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,299,443 - 26,336,138 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,299,443 - 26,335,228 (-)EnsemblGRCm39 Ensembl
GRCm38226,409,431 - 26,446,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,409,431 - 26,445,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,264,951 - 26,300,736 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,231,445 - 26,250,355 (-)NCBIMGSCv36mm8
Celera226,127,145 - 26,163,053 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.89NCBI
Sec16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,627,779 - 29,662,925 (-)NCBIGRCr8
mRatBN7.239,229,687 - 9,264,837 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,229,687 - 9,264,273 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,283,667 - 12,318,439 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,866,897 - 20,901,669 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,122,236 - 19,157,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,856,218 - 3,890,785 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,856,218 - 3,890,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,217,446 - 9,252,578 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,583,882 - 4,613,980 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera34,049,023 - 4,084,074 (-)NCBICelera
Cytogenetic Map3p13NCBI
SEC16A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,897,588 - 2,943,143 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,899,923 - 2,945,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,516,556 - 107,560,930 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,493,957 - 136,533,672 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,493,957 - 136,533,655 (-)Ensemblpanpan1.1panPan2
SEC16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,027,190 - 49,060,858 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,031,669 - 49,060,848 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,277,816 - 48,311,534 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,903,885 - 49,937,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,903,923 - 49,937,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,684,649 - 48,718,370 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,978,370 - 49,012,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,026,101 - 49,059,830 (+)NCBIUU_Cfam_GSD_1.0
Sec16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,999,577 - 202,031,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,343,879 - 1,375,508 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,344,019 - 1,375,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC16A
(Sus scrofa - pig)		 No map positions available.
SEC16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,718,520 - 1,763,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,724,838 - 1,761,941 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,452,828 - 3,498,315 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,594,899 - 1,629,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,595,021 - 1,628,985 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011584   ⟹   ENSCLAP00000011447
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555134,273,581 - 4,303,157 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011585   ⟹   ENSCLAP00000011448
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555134,273,581 - 4,303,157 (+)Ensembl
RefSeq Acc Id: XM_005408487   ⟹   XP_005408544
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,273,640 - 4,304,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408488   ⟹   XP_005408545
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,273,640 - 4,304,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506686   ⟹   XP_013362140
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,272,623 - 4,304,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506687   ⟹   XP_013362141
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,273,640 - 4,304,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506688   ⟹   XP_013362142
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,273,254 - 4,304,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506689   ⟹   XP_013362143
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,273,169 - 4,304,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506690   ⟹   XP_013362144
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,273,640 - 4,304,314 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005408544   ⟸   XM_005408487
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408545   ⟸   XM_005408488
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YNE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362140   ⟸   XM_013506686
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362143   ⟸   XM_013506689
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362142   ⟸   XM_013506688
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362141   ⟸   XM_013506687
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362144   ⟸   XM_013506690
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000011447   ⟸   ENSCLAT00000011584
RefSeq Acc Id: ENSCLAP00000011448   ⟸   ENSCLAT00000011585
Protein Domains
Ancestral coatomer element 1 Sec16/Sec31   Sec16 central conserved


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011584 ENTREZGENE
  ENSCLAT00000011584.1 UniProtKB/TrEMBL
  ENSCLAT00000011585 ENTREZGENE
  ENSCLAT00000011585.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.1030 UniProtKB/TrEMBL
InterPro ACE1_Sec16_Sec31 UniProtKB/TrEMBL
  Sec16 UniProtKB/TrEMBL
  Sec16_CCD UniProtKB/TrEMBL
NCBI Gene Sec16a ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC16A UniProtKB/TrEMBL
  PTHR13402 UniProtKB/TrEMBL
Pfam Sec16 UniProtKB/TrEMBL
  Sec16_C UniProtKB/TrEMBL
UniProt A0A8C2V7S4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YNE5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Sec16a  SEC16 homolog A, endoplasmic reticulum export factor    SEC16 homolog A (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED