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Gene: Lrrc47 (leucine rich repeat containing 47) Ictidomys tridecemlineatus

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Symbol:

Lrrc47

Name:

leucine rich repeat containing 47

RGD ID:

12718639

Description:

ENCODES a protein that exhibits phenylalanine-tRNA ligase activity (inferred); RNA binding (inferred); INVOLVED IN phenylalanyl-tRNA aminoacylation (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Goldberg-Shprintzen syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 47

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	29,326,815 - 29,336,188 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	129,724 - 139,468 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	129,781 - 139,139 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc47	Squirrel	chromosome 1p36 deletion syndrome		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar
Lrrc47	Squirrel	Ehlers-Danlos syndrome spondylodysplastic type 2		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome, spondylodysplastic type, 2	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Lrrc47	Squirrel	Goldberg-Shprintzen syndrome		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090\|PMID:28492532\|PMID:31602316
Lrrc47	Squirrel	immunodeficiency 16		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Combined immunodeficiency due to OX40 deficiency	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Lrrc47	Squirrel	immunodeficiency 38		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Lrrc47	Squirrel	Joubert syndrome 25		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Joubert syndrome 25	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Lrrc47	Squirrel	Neurodevelopmental Disorders		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Lrrc47	Squirrel	Peroxisome Biogenesis Disorder, Complementation Group 7		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorder, complementation group 7	ClinVar	PMID:10862081\|PMID:19492091\|PMID:21031596\|PMID:26477546\|PMID:28492532\|PMID:31674007\|PMID:9683594
Lrrc47	Squirrel	Shprintzen-Goldberg Craniosynostosis		ISO	RGD:1603205	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090\|PMID:28492532\|PMID:31602316

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc47	Squirrel	phenylalanyl-tRNA aminoacylation	involved_in	IEA	InterPro:IPR045060	150520179		InterPro	GO_REF:0000002

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lrrc47	Squirrel	phenylalanine-tRNA ligase activity	enables	IEA	PANTHER:PTN000101821	150520179		TreeGrafter	GO_REF:0000118
Lrrc47	Squirrel	phenylalanine-tRNA ligase activity	enables	IEA	InterPro:IPR005146\|InterPro:IPR045060	150520179		InterPro	GO_REF:0000002
Lrrc47	Squirrel	protein binding	enables	ISO	UniProtKB:P04591-PRO_0000038596	9068941	PMID:22190034	IntAct	PMID:22190034
Lrrc47	Squirrel	RNA binding	enables	IEA	InterPro:IPR005146	150520179		InterPro	GO_REF:0000002

PMID:22301074	PMID:30032202

Lrrc47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	29,326,815 - 29,336,188 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	129,724 - 139,468 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	129,781 - 139,139 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	3,778,559 - 3,796,498 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	3,778,559 - 3,796,498 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	3,695,123 - 3,713,062 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	3,686,644 - 3,702,928 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	2,950,824 - 2,967,113 (-)	NCBI		Celera
Cytogenetic Map	1	p36.32	NCBI
HuRef	1	2,991,976 - 3,008,273 (-)	NCBI		HuRef
CHM1_1	1	3,683,800 - 3,700,087 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	3,290,152 - 3,308,095 (-)	NCBI		T2T-CHM13v2.0

Lrrc47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	154,096,260 - 154,105,969 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	154,096,188 - 154,105,970 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	154,011,803 - 154,021,512 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	154,011,731 - 154,021,513 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	153,385,912 - 153,395,621 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	152,855,603 - 152,865,312 (+)	NCBI		MGSCv36	mm8
Celera	4	156,299,232 - 156,308,982 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	83.79	NCBI

Lrrc47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	169,852,926 - 169,862,598 (+)	NCBI		GRCr8
mRatBN7.2	5	164,570,539 - 164,580,174 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	164,570,435 - 164,580,174 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	167,274,646 - 167,284,281 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	169,096,056 - 169,105,691 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	169,058,504 - 169,068,139 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	171,297,850 - 171,307,682 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	171,297,850 - 171,307,682 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	174,789,385 - 174,799,217 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	170,798,638 - 170,808,075 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	170,809,132 - 170,817,648 (+)	NCBI
Celera	5	162,782,523 - 162,792,158 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Lrrc47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	7,880,259 - 7,889,274 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	7,880,259 - 7,890,709 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC47
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	224,512,320 - 224,528,635 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	223,156,378 - 223,172,677 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	2,451,747 - 2,468,043 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	3,573,386 - 3,589,523 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

LRRC47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	58,286,909 - 58,297,961 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	58,288,392 - 58,297,996 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	58,297,340 - 58,308,300 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	58,494,439 - 58,505,422 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	58,495,866 - 58,505,437 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	58,502,183 - 58,513,143 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	58,371,127 - 58,382,049 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	58,761,350 - 58,772,306 (-)	NCBI		UU_Cfam_GSD_1.0

LRRC47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	65,260,793 - 65,271,729 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	65,261,990 - 65,271,745 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	59,996,805 - 59,999,528 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	127,881,446 - 127,896,138 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	127,881,473 - 127,895,959 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	32,092,831 - 32,108,227 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	6,740,983 - 6,750,877 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	6,741,029 - 6,749,919 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005339214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000024714 ⟹ ENSSTOP00000018970

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936737	129,795 - 137,557 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000036098 ⟹ ENSSTOP00000024159

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936737	129,724 - 139,468 (+)	Ensembl

RefSeq Acc Id:

XM_005339214 ⟹ XP_005339271

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	29,326,815 - 29,336,188 (-)	NCBI
SpeTri2.0	NW_004936737	129,781 - 139,139 (+)	NCBI

Sequence:

show sequence

CAGGCGGCGGCGCGATGGCGGCGGCGGCTGTGTCCGAGCCCTGGCCGGAGCTGGAGCTTGCGGAGCGTGAGCGGCGGCGCGAGCTGCTGCTGACGGGCCCGGGGCTGGAGGAGCGGGTGCGGGCGGCG
GGCGGGCGGCTGCCGCCACGGCTCTTCACGCTGCCGCTGCTGCACTACCTGGAGGTGAGCGGCTGTGGCAGCCTGCGCGCGCCGGGGCCGGGCCTGGCGCAGGGCCTGCCGCAGCTGCACAGCCTCGT
GCTGCGGCGCAATGCGCTGGGGCCCGGCCTGAGCCCTGAGCTGGGCCCGCTGCTAGCGCTGCGCGTGCTCGACCTGTCGGGCAACGCGCTGGAGGCGCTGCCGCCGGGCCAGGGCCTGGGCCCCGCGG
AGCCGCCGGGGCTGCCGCAGCTGCAGAGCCTCAACCTCAGCGGCAACCGGCTGCGCGAGCTGCCCGCCGACCTGGCGCGCTGCGCCCCGCGCCTGCAGAGCCTCAACCTCACCGGCAACTGCCTGGAC
GCCTTCCCCGCCGCGCTCTTCAGCCCCGGCGCGCTGCCCCTGCTCAGCGAGTTGGCGGCCGCAGACAATTGCCTGCGAGAGCTCAGCCCCGACATCGCGCACCTGGCCTCACTCAAGACCCTGGACCT
CTCCAACAATCAGCTAAGCGAGATCCCTGCCGAGCTGGCCGACTGCCCCAAGCTCAAGGAGGTCAACTTCCGAGGGAACAAGCTTCGAGACAAGCGCCTAGAGAAGATGGTCAGCGGCTGCCAGACCA
AGTCCATCCTGGAGTACCTGCGTGTTGGCGGCCGGGGCTGTGGCCGGGGCAGCGGCCGGGGCAAGGGCAGGGCAGAGGGTGCTGAGAAGGAAGACGGCGGGAAGAAGAGGAGGGAGCGGAAGCAGAGG
CGGGAGAGTGGCGAGGGGGAGGAGGAAGCCACTGATGCCGCCAGGCTGCTGCTCAGGGTCCTCCATGTCTCTGAAAACCCCTCACCCCTGACGGTCAGAGTGAGCCCCGAGGTCAGGGACGTGCGGCC
ATACATCGTGGGGGCTGTTGTGCGGGGCATGGACCTGCGGCCTGGAAACGCACTCAAGCGCTTCCTGACCTCCCAGACCAGACTCCACGAAGACCTCTGTGGGAAGAGGACGGCAGCCACCATTGCCA
CCCATGACCTGCGTGCCCTGCGGGGACCCTTGCTGTATGCCACTCAGCCACCCCAGGACCTCAAGATTGTCCCCTTGGGGCGGAAGGAAGCCAAGGCCAAGGAGCTGGTGCGGCAGCTGCAGCTGGAG
GCTGAGGAGCAGCGGAAGCAGAAGAAGAGGCAGAGCGTCTCGGGGCTGCACCGGTACCTTCACTTACTGGACGGGAAGGAGAATTACCCTTGTCTCATGGACGCAGATGGAGATGTGATTTCTTTCCC
ACCAATAACGAACAGTGAGAAGACAAAGATTAAGAAGACGACTAGTGATCTGTTCTTGGAAGTGACCAGTGCCACTAGTCTGCAGATTTGCAAAGATGTCATGGACACCCTCATTCTGAAAATGGCAG
AAATGAACAAATACACTTCAGAAAATAAAGAGGAGGGATCACTCTCGGATACGGAAGCCGATGCAGTTTCTGGACAACTCTCGGATCCTCAAGTGAATCCTGGTGCTGGGAAGGATGGACAGTCCCCC
CTGGTGGTGGAGCAGGTTCGCGTGGTGGACCTGGAGGGGAGCTTGAAGGTGGTGTACCCATCTAAGGCTGACCTGGCTGCAGCTCCTCCCCATGTTACCGTCCTTCGCTGACAGGCCAAACTGGGCTC
AAGCCAGCAGGCCATCCGTCACGTGCGCCTGGTTTTACGGGGTTTGTGAGTGACGCTAAGTTATTCAGTATGTTCCCACCTCCGTGTTGTTAGGTGTGTCTTTGTTTGCTTTATCCAGTGATTCTGTT
GTAAAGTGAATGGCTGTGTTGTCTTCACAACACTAAACTGATGTTGCAGGTTTTCATGGAATTGTTCAAATACCAGAAGTAGCTATTCAGCATGTTCCAAATCATGCAGGCCCACTGAGACCCTGGGA
TTGGTGTGAGTATGCCAAAGTCAGTTGGACAGCTGGTCAACATGTGTTATTTTTCTATGATGTAATCTTTCTAAGTCATTTTGGGCCAGTAGTGCCAGAACGTCATGTTTTCCAGCTTACATGACTTT
AATCTTTTTATTTAAAGGAAAAAAAAGTTTTTTAAACACAAGTTTAGAACAAGCAGTGTTTTTTCTCAGTGTTGGCTGGTGGGGCGCCTGACGGCTGTGAGCTGTACCGGACCTTCAGGATCAGCAGC
CCCAGGTCTGTGGGCTCTGCACAGCTGGGACGGGAAGGGTGGGGTGAATGGTGGCCGGTCATCGTTGGCATGTCAGCACCACAGCTGTGGACAGCTGTCATACCTAGCCCTAGAGGAATGTGGGGCAT
GGGTGGGCATATGGGACAGCTCTGTTCATGAGCTGTCAGTGGTCCCTGGCCTGCTAAAGGGCATGGGCAGGGACCAGAGAAGGCATCATAAAGTTCTAGCGTCGGATGAGTGGCTTCCCGAGTCGGGC
CTTCAGGTGGGTTCCGTTGTGAAGGCTGTTTCGTGTGTGGGTTTATTGCCTGGCACATGCACACCCTCCCTGGAGCCAGAGTGCGTGGTCCAGAGGTCCTGTGGCCTCTCTGCTCGGTTCTGGCTGAG
GAGCAGCACCTGACACATCAGCATCTTATTTGATGATACTTCTTTTGGTAGCCTTTGACCTAAGGGACAGTTTTTCTCTCACGGAAGAGACTGGTGATTTTTTTGGAGGATTTGCAGGAAGCCCAAGG
TCCCTCCAGGTGGGTTCCTAACAAAGGTGGGTGGCTCCAGAGCTTAGAGGCATGAGCTAGCTGCCTTGCAGCTCCAGCCCAGCTGGCCAGTCCACCAGGCTCAGGCTAATCCAGTGGCCAGGCTGGCT
ACAGTGGGCTTGCAGACCATAGCTTTCCCTTGGGGCCTGTCCTCCCAAAGCCTGTGTCACGCCTGTGTCAGTGGCCCTGCATGTGGTCTCATGAGTCGCTGTCGGGCCATCAAGGCTGCTGGGGTGTG
CTTAGCAAGGGTTCTGTCCTACTAGGAGGCCCAGGAGAGCTTCCCCAGGCAGGACCCTGCCCACGCTTCAGGCAGGGCCATGGACAGTTGAGAGTACCCTTTGGATAGCTGTGGCAGAGGGCCACCCT
GTCTCTGGGTGGCTCAGCCCCGGTTCGAGCTGCCTTGACTCCCCAGGCTGCAGTGGATGCAGCCGAGTACCATGAGGTTTGGAGTGTTCATAGGAAGTTTGGCCAACACCGTCCTTGCCTGGCCATCT
CTTTAATAAAACATTTCCTAAGAAATGCC

hide sequence


Protein RefSeqs	XP_005339271	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000018970.2
	ENSSTOP00000024159.1
GenBank Protein	KAG3281985	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005339271 ⟸ XM_005339214

- UniProtKB:

A0A287CS97 (UniProtKB/TrEMBL), I3N3M4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAAVSEPWPELELAERERRRELLLTGPGLEERVRAAGGRLPPRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLLALRVLDLSGNALEALPPGQGLGPAEPPGL
PQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDAFPAALFSPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIPAELADCPKLKEVNFRGNKLRDKRLEKMVSGCQTKSILE
YLRVGGRGCGRGSGRGKGRAEGAEKEDGGKKRRERKQRRESGEGEEEATDAARLLLRVLHVSENPSPLTVRVSPEVRDVRPYIVGAVVRGMDLRPGNALKRFLTSQTRLHEDLCGKRTAATIATHDLR
ALRGPLLYATQPPQDLKIVPLGRKEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYPCLMDADGDVISFPPITNSEKTKIKKTTSDLFLEVTSATSLQICKDVMDTLILKMAEMNKY
TSENKEEGSLSDTEADAVSGQLSDPQVNPGAGKDGQSPLVVEQVRVVDLEGSLKVVYPSKADLAAAPPHVTVLR

hide sequence

Ensembl Acc Id:

ENSSTOP00000018970 ⟸ ENSSTOT00000024714

Ensembl Acc Id:

ENSSTOP00000024159 ⟸ ENSSTOT00000036098

Protein Domains

B3/B4 tRNA-binding

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000027559	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024714.2	UniProtKB/TrEMBL
	ENSSTOT00000036098.1	UniProtKB/TrEMBL
Gene3D-CATH	3.50.40.10	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	B3/B4_tRNA-bd	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_4	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	Phe-tRNA-ligase_IIc_bsu	UniProtKB/TrEMBL
	Phe-tRNA_synthase-like_B3/B4	UniProtKB/TrEMBL
NCBI Gene	Lrrc47	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	UniProtKB/TrEMBL
	PTHR10947	UniProtKB/TrEMBL
Pfam	LRR_4	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PRINTS	LEURICHRPT	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	B3_4	UniProtKB/TrEMBL
	LRR_BAC	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A287CS97	ENTREZGENE, UniProtKB/TrEMBL
	I3N3M4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar