LRRC47 (leucine rich repeat containing 47) - Rat Genome Database

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Gene: LRRC47 (leucine rich repeat containing 47) Pan paniscus
Analyze
Symbol: LRRC47
Name: leucine rich repeat containing 47
RGD ID: 11683988
Description: ENCODES a protein that exhibits phenylalanine-tRNA ligase activity (inferred); RNA binding (inferred); INVOLVED IN phenylalanyl-tRNA aminoacylation (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat-containing protein 47
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,512,320 - 224,528,635 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,156,378 - 223,172,677 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,451,747 - 2,468,043 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,573,386 - 3,589,523 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LRRC47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,512,320 - 224,528,635 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,156,378 - 223,172,677 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,451,747 - 2,468,043 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,573,386 - 3,589,523 (-)NCBIpanpan1.1PanPan1.1panPan2
LRRC47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,778,559 - 3,796,498 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,778,559 - 3,796,498 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,695,123 - 3,713,062 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,686,644 - 3,702,928 (-)NCBINCBI36Build 36hg18NCBI36
Celera12,950,824 - 2,967,113 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef12,991,976 - 3,008,273 (-)NCBIHuRef
CHM1_113,683,800 - 3,700,087 (-)NCBICHM1_1
T2T-CHM13v2.013,290,152 - 3,308,095 (-)NCBIT2T-CHM13v2.0
Lrrc47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,096,260 - 154,105,969 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,096,188 - 154,105,970 (+)EnsemblGRCm39 Ensembl
GRCm384154,011,803 - 154,021,512 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,011,731 - 154,021,513 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,385,912 - 153,395,621 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364152,855,603 - 152,865,312 (+)NCBIMGSCv36mm8
Celera4156,299,232 - 156,308,982 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.79NCBI
Lrrc47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85169,852,926 - 169,862,598 (+)NCBIGRCr8
mRatBN7.25164,570,539 - 164,580,174 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,570,435 - 164,580,174 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,274,646 - 167,284,281 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,096,056 - 169,105,691 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,058,504 - 169,068,139 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,297,850 - 171,307,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,297,850 - 171,307,682 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,789,385 - 174,799,217 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,798,638 - 170,808,075 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15170,809,132 - 170,817,648 (+)NCBI
Celera5162,782,523 - 162,792,158 (+)NCBICelera
Cytogenetic Map5q36NCBI
Lrrc47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554867,880,259 - 7,889,274 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554867,880,259 - 7,890,709 (+)NCBIChiLan1.0ChiLan1.0
LRRC47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,286,909 - 58,297,961 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,288,392 - 58,297,996 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,297,340 - 58,308,300 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,494,439 - 58,505,422 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,495,866 - 58,505,437 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,502,183 - 58,513,143 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,371,127 - 58,382,049 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,761,350 - 58,772,306 (-)NCBIUU_Cfam_GSD_1.0
Lrrc47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,326,815 - 29,336,188 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936737129,724 - 139,468 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936737129,781 - 139,139 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,260,793 - 65,271,729 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,261,990 - 65,271,745 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2659,996,805 - 59,999,528 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120127,881,446 - 127,896,138 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20127,881,473 - 127,895,959 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605432,092,831 - 32,108,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrc47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,740,983 - 6,750,877 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,741,029 - 6,749,919 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034953826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034953826   ⟹   XP_034809717
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21224,512,320 - 224,528,635 (+)NCBI
NHGRI_mPanPan11223,156,378 - 223,172,677 (+)NCBI
Mhudiblu_PPA_v012,451,747 - 2,468,043 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034809717 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000026559.1
Reference Protein Sequences
RefSeq Acc Id: XP_034809717   ⟸   XM_034953826
Protein Domains
B3/B4 tRNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036370 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049393.1 UniProtKB/TrEMBL
Gene3D-CATH 3.50.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro B3/B4_tRNA-bd UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_4 UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Phe-tRNA-ligase_IIc_bsu UniProtKB/TrEMBL
  Phe-tRNA_synthase-like_B3/B4 UniProtKB/TrEMBL
NCBI Gene LRRC47 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 UniProtKB/TrEMBL
  PTHR10947 UniProtKB/TrEMBL
Pfam LRR_4 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART B3_4 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A2R9BAC8_PANPA UniProtKB/TrEMBL