Lpar6 (lysophosphatidic acid receptor 6) - Rat Genome Database

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Gene: Lpar6 (lysophosphatidic acid receptor 6) Ictidomys tridecemlineatus
Analyze
Symbol: Lpar6
Name: lysophosphatidic acid receptor 6
RGD ID: 12711148
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); lysophosphatidic acid receptor activity (inferred); INVOLVED IN blastocyst hatching (inferred); G protein-coupled receptor signaling pathway (inferred); phospholipase C-activating G protein-coupled receptor signaling pathway (inferred); ASSOCIATED WITH Autosomal Recessive Woolly Hair (ortholog); chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,204,006 - 158,205,826 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365651,688,314 - 1,689,348 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365651,688,218 - 1,689,876 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lpar6SquirrelAutosomal Recessive Woolly Hair  ISORGD:13496468554872ClinVar Annotator: match by term: Woolly hair, autosomal recessive 1, with or without hypotrichosisClinVarPMID:18297072|PMID:18461368|PMID:19292720|PMID:21426374|PMID:25119526|PMID:25741868|PMID:36173926
Lpar6Squirrelchromosome 13q14 deletion syndrome  ISORGD:13496468554872ClinVar Annotator: match by term: Chromosome 13q14 deletion syndromeClinVar 
Lpar6Squirrelgenetic disease  ISORGD:13496468554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
Lpar6Squirrelhypotrichosis 8  ISORGD:13496468554872ClinVar Annotator: match by term: HYPOTRICHOSIS, LOCALIZED, AUTOSOMAL RECESSIVE 3 | ClinVar Annotator: match by more ...ClinVarPMID:18297070|PMID:18297072|PMID:18461368|PMID:18692127|PMID:19292720|PMID:19944572|PMID:21070332|PMID:21426374|PMID:25119526|PMID:25741868|PMID:28425126|PMID:33017051|PMID:34374989|PMID:34582790|PMID:36173926
Lpar6Squirrelintellectual disability  ISORGD:13496468554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Lpar6Squirrelmitochondrial DNA depletion syndrome 5  ISORGD:13496468554872ClinVar Annotator: match by term: Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic more ...ClinVarPMID:15877282|PMID:17301081|PMID:26475597|PMID:28492532
Lpar6Squirrelretinoblastoma  ISORGD:13496468554872ClinVar Annotator: match by term: RetinoblastomaClinVarPMID:12541220|PMID:17096365|PMID:20090211|PMID:21505449|PMID:22909775|PMID:23301675|PMID:24225018|PMID:25640679|PMID:25741868|PMID:27879208|PMID:28492532|PMID:28575107|PMID:29568217|PMID:33456302|PMID:33493472|PMID:8099255
Lpar6Squirrelretinoblastoma  ISORGD:13496468554872ClinVar Annotator: match by term: Eye cancer, retinoblastoma | ClinVar Annotator: match by term: RetinoblastomaClinVarPMID:12541220|PMID:15877282|PMID:17096365|PMID:17301081|PMID:21505449|PMID:22909775|PMID:23301675|PMID:25640679|PMID:26475597|PMID:28492532|PMID:28575107|PMID:29568217|PMID:8099255
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lpar6Squirrelhypotrichosis  ISORGD:13496469068941CTD Direct Evidence: marker/mechanismCTDPMID:18297072
Lpar6Squirrelhypotrichosis 1  ISORGD:13496469068941CTD Direct Evidence: marker/mechanismCTDPMID:18297070
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lpar6Squirrelhypotrichosis 8  ISORGD:13496467240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lpar6Squirrelblastocyst hatching acts_upstream_of_or_withinIEAUniProtKB:Q8BMC0|ensembl:ENSMUSP00000042327150520179 EnsemblGO_REF:0000107
Lpar6SquirrelG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-0297150520179 UniProtGO_REF:0000043
Lpar6SquirrelG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276150520179 InterProGO_REF:0000002
Lpar6Squirrelphospholipase C-activating G protein-coupled receptor signaling pathway involved_inIEAPANTHER:PTN000660933150520179 TreeGrafterGO_REF:0000118
Lpar6Squirrelpositive regulation of Rho protein signal transduction involved_inIEAPANTHER:PTN000660933150520179 TreeGrafterGO_REF:0000118
Lpar6Squirrelsignal transduction involved_inIEAUniProtKB-KW:KW-0807150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lpar6Squirrelmembrane located_inIEAInterPro:IPR000276|InterPro:IPR017452150520179 InterProGO_REF:0000002
Lpar6Squirrelmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
Lpar6Squirrelmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
Lpar6Squirrelplasma membrane located_inIEAUniProtKB:P43657|ensembl:ENSP00000482660150520179 EnsemblGO_REF:0000107
Lpar6Squirrelplasma membrane located_inIEAPANTHER:PTN000660933150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Lpar6SquirrelG protein-coupled receptor activity enablesIEAPANTHER:PTN000660933150520179 TreeGrafterGO_REF:0000118
Lpar6SquirrelG protein-coupled receptor activity enablesIEAInterPro:IPR000276150520179 InterProGO_REF:0000002
Lpar6SquirrelG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-0297150520179 UniProtGO_REF:0000043
Lpar6Squirrellysophosphatidic acid receptor activity enablesIEAPANTHER:PTN000660933150520179 TreeGrafterGO_REF:0000118
Lpar6Squirrelprotein binding enablesISOUniProtKB:P54849|UniProtKB:Q96IW7|UniProtKB:Q9BZL3|UniProtKB:Q9NS649068941 PMID:32296183IntActPMID:32296183

PMID:22301074   PMID:30032202  



Lpar6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,204,006 - 158,205,826 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365651,688,314 - 1,689,348 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365651,688,218 - 1,689,876 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPAR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,389,571 - 48,444,669 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1348,389,567 - 48,444,704 (-)EnsemblGRCh38hg38GRCh38
GRCh371348,985,274 - 49,018,805 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361347,883,182 - 47,887,947 (-)NCBINCBI36Build 36hg18NCBI36
Build 341347,883,275 - 47,887,947NCBI
Celera1330,039,912 - 30,073,567 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1329,777,751 - 29,810,928 (-)NCBIHuRef
CHM1_11348,952,866 - 48,985,831 (-)NCBICHM1_1
T2T-CHM13v2.01347,609,888 - 47,664,937 (-)NCBIT2T-CHM13v2.0
Lpar6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,475,331 - 73,477,798 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1473,475,335 - 73,480,734 (+)EnsemblGRCm39 Ensembl
GRCm381473,237,891 - 73,240,358 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,237,895 - 73,243,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv371473,637,698 - 73,640,165 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361471,972,050 - 71,974,497 (+)NCBIMGSCv36mm8
Celera1470,758,227 - 70,760,692 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1438.75NCBI
Lpar6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,826,110 - 54,827,919 (+)NCBIGRCr8
mRatBN7.21548,416,548 - 48,418,357 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1548,416,544 - 48,422,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1552,557,397 - 52,559,217 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01553,668,972 - 53,670,792 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01550,514,212 - 50,516,021 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01555,126,953 - 55,128,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1555,126,953 - 55,128,761 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01558,850,070 - 58,851,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,875,463 - 53,877,272 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1548,066,078 - 48,067,887 (+)NCBICelera
Cytogenetic Map15q11NCBI
Lpar6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,077,269 - 2,078,300 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,077,093 - 2,079,000 (-)NCBIChiLan1.0ChiLan1.0
LPAR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21449,860,878 - 49,893,160 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11348,511,768 - 48,544,291 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01329,561,219 - 29,567,414 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11348,262,910 - 48,295,264 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,263,254 - 48,264,291 (-)Ensemblpanpan1.1panPan2
LPAR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1223,110,797 - 3,112,973 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl223,111,462 - 3,112,499 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha223,139,671 - 3,141,658 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0223,175,184 - 3,176,372 (+)NCBIROS_Cfam_1.0
LPAR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,219,077 - 19,220,347 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11119,216,305 - 19,220,913 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,680,377 - 19,682,665 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LPAR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,332,770 - 26,335,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl326,333,023 - 26,334,054 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605717,570,804 - 17,573,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpar6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247486,423,861 - 6,424,892 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247486,423,170 - 6,425,149 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005330195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000019674   ⟹   ENSSTOP00000019016
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365651,688,314 - 1,689,348 (-)Ensembl
RefSeq Acc Id: XM_005330195   ⟹   XP_005330252
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945158,204,006 - 158,205,826 (-)NCBI
SpeTri2.0NW_0049365651,688,218 - 1,689,876 (-)NCBI
Sequence:
Protein RefSeqs XP_005330252 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019016.1
GenBank Protein KAG3293067 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005330252   ⟸   XM_005330195
- UniProtKB: I3N3S0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000019016   ⟸   ENSSTOT00000019674


1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000026961 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019674.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene Lpar6 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  LYSOPHOSPHATIDIC ACID RECEPTOR 6 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  P2Y5ORPHANR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt I3N3S0 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows