Symbol: |
Lpar6 |
Name: |
lysophosphatidic acid receptor 6 |
RGD ID: |
12711148 |
Description: |
ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); lysophosphatidic acid receptor activity (inferred); INVOLVED IN blastocyst hatching (inferred); G protein-coupled receptor signaling pathway (inferred); phospholipase C-activating G protein-coupled receptor signaling pathway (inferred); ASSOCIATED WITH Autosomal Recessive Woolly Hair (ortholog); chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 158,204,006 - 158,205,826 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936565 | 1,688,314 - 1,689,348 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936565 | 1,688,218 - 1,689,876 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Lpar6 | Squirrel | Autosomal Recessive Woolly Hair | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Woolly hair, autosomal recessive 1, with or without hypotrichosis | ClinVar | PMID:18297072|PMID:18461368|PMID:19292720|PMID:21426374|PMID:25119526|PMID:25741868|PMID:36173926 | Lpar6 | Squirrel | chromosome 13q14 deletion syndrome | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Chromosome 13q14 deletion syndrome | ClinVar | | Lpar6 | Squirrel | genetic disease | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | Lpar6 | Squirrel | hypotrichosis 8 | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: HYPOTRICHOSIS, LOCALIZED, AUTOSOMAL RECESSIVE 3 | ClinVar Annotator: match by more ... | ClinVar | PMID:18297070|PMID:18297072|PMID:18461368|PMID:18692127|PMID:19292720|PMID:19944572|PMID:21070332|PMID:21426374|PMID:25119526|PMID:25741868|PMID:28425126|PMID:33017051|PMID:34374989|PMID:34582790|PMID:36173926 | Lpar6 | Squirrel | intellectual disability | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Intellectual disability | ClinVar | | Lpar6 | Squirrel | mitochondrial DNA depletion syndrome 5 | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic more ... | ClinVar | PMID:15877282|PMID:17301081|PMID:26475597|PMID:28492532 | Lpar6 | Squirrel | retinoblastoma | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Retinoblastoma | ClinVar | PMID:12541220|PMID:17096365|PMID:20090211|PMID:21505449|PMID:22909775|PMID:23301675|PMID:24225018|PMID:25640679|PMID:25741868|PMID:27879208|PMID:28492532|PMID:28575107|PMID:29568217|PMID:33456302|PMID:33493472|PMID:8099255 | Lpar6 | Squirrel | retinoblastoma | | ISO | RGD:1349646 | 8554872 | ClinVar Annotator: match by term: Eye cancer, retinoblastoma | ClinVar Annotator: match by term: Retinoblastoma | ClinVar | PMID:12541220|PMID:15877282|PMID:17096365|PMID:17301081|PMID:21505449|PMID:22909775|PMID:23301675|PMID:25640679|PMID:26475597|PMID:28492532|PMID:28575107|PMID:29568217|PMID:8099255 |
Lpar6 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 158,204,006 - 158,205,826 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936565 | 1,688,314 - 1,689,348 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936565 | 1,688,218 - 1,689,876 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LPAR6 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 48,389,571 - 48,444,669 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 48,389,567 - 48,444,704 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 48,985,274 - 49,018,805 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 47,883,182 - 47,887,947 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 13 | 47,883,275 - 47,887,947 | NCBI | | | | | Celera | 13 | 30,039,912 - 30,073,567 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | q14.2 | NCBI | | | | | HuRef | 13 | 29,777,751 - 29,810,928 (-) | NCBI | | HuRef | | | CHM1_1 | 13 | 48,952,866 - 48,985,831 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 47,609,888 - 47,664,937 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Lpar6 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 14 | 73,475,331 - 73,477,798 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 73,475,335 - 73,480,734 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 73,237,891 - 73,240,358 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 73,237,895 - 73,243,294 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 73,637,698 - 73,640,165 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 71,972,050 - 71,974,497 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 70,758,227 - 70,760,692 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | D3 | NCBI | | | | | cM Map | 14 | 38.75 | NCBI | | | | |
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Lpar6 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 54,826,110 - 54,827,919 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 48,416,548 - 48,418,357 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 48,416,544 - 48,422,331 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 52,557,397 - 52,559,217 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 53,668,972 - 53,670,792 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 50,514,212 - 50,516,021 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 55,126,953 - 55,128,762 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 55,126,953 - 55,128,761 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 58,850,070 - 58,851,879 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 53,875,463 - 53,877,272 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 15 | 48,066,078 - 48,067,887 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | q11 | NCBI | | | | |
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Lpar6 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955431 | 2,077,269 - 2,078,300 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955431 | 2,077,093 - 2,079,000 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LPAR6 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 49,860,878 - 49,893,160 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 48,511,768 - 48,544,291 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 29,561,219 - 29,567,414 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 48,262,910 - 48,295,264 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 13 | 48,263,254 - 48,264,291 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LPAR6 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 22 | 3,110,797 - 3,112,973 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 22 | 3,111,462 - 3,112,499 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 22 | 3,139,671 - 3,141,658 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 22 | 3,175,184 - 3,176,372 (+) | NCBI | | ROS_Cfam_1.0 | | |
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LPAR6 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 11 | 19,219,077 - 19,220,347 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 19,216,305 - 19,220,913 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 19,680,377 - 19,682,665 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LPAR6 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 3 | 26,332,770 - 26,335,289 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 26,333,023 - 26,334,054 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666057 | 17,570,804 - 17,573,633 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Lpar6 (Heterocephalus glaber - naked mole-rat) |
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Ensembl Acc Id: |
ENSSTOT00000019674 ⟹ ENSSTOP00000019016 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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SpeTri2.0 Ensembl | NW_004936565 | 1,688,314 - 1,689,348 (-) | Ensembl |
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RefSeq Acc Id: |
XM_005330195 ⟹ XP_005330252 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404945 | 158,204,006 - 158,205,826 (-) | NCBI | SpeTri2.0 | NW_004936565 | 1,688,218 - 1,689,876 (-) | NCBI |
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Sequence: |
AAAAGAAGCAAGAAAGAAAAAAGGACTAATTGGGAATGTTTAAGTCTCTGAAACTCTGCATTGAAAAGCAAAATAAGATTAATCATTTAAGCTTAAACATTGTGGATTGTAAAGGAACTCTGATTCTG AAATACTCATCTTGACTACTGAAATACAAGTTTATAAGACAAAGAGCTGTGTACCATCTTAGAACACAGCTTTTCTTTTCATTTGCAATCCTGTGGATTGGCTTCACTGACTGCATTTTCCCATCAGT TAACTAAAGCTTGGATTCATGGATTTTCTGGAGACTAGAAAATAAAAATATTTTCCTGTTCTTCATCTACTGGAAACTTTACAACAACAAGTTTCATGTTTCTTTCATATATTTTGGAGAAAAAGGAA ATATTTATAAAACCACCCAAAGATCCAAATAATTTGCGAATAAACTGGATGTTATAGTGGTCGCAATCTGAATATCAAAGGAGACTACAGCCAGGGACCAGGGACCTACGGAATTTCTTACTGTAAGT TGGAAGTGCCTTTATAATGGTAAGCGCTAACAGCTCTCAATGCCCCTATGATGACTCCTTTAAGTACACTTTATATGGGTGCATGTTCAGCATGGTGTTTGTGCTTGGCTTAATATCCAATTGTGTTG CCATATACATTTTCATCTGCACCCTCAAAGTGCGAAATGAAACTACCACATACATGATTAACTTGGCAATGTCAGACTTGCTTTTCGTTTTTACTTTACCCTTCAGGATTTTCTACTTTGCAACACGA AATTGGCCATTTGGAGATTTGCTTTGTAAGATTTCTGTGATGTTGTTTTATACCAACATGTATGGAAGCATTCTGTTCTTAACCTGCATTAGTGTAGATCGATTTCTGGCAATTGTCTACCCATTTAA GTCAAAGACTCTAAGAACCAAACGAAATGCAAAGTTTGTTTGCATTGCTGTGTGGTTAACTGTGATCGGAGGAAGTGCACCAGCAGTTTTTTTTCAGTCTACCCACTCTCGGGGCAACAATACCTCAG AAGCCTGCTTTGAAAACTTTCCAGAAGCTACTTGGAAAACATATCTTTCAAGGATTGTAATTTTCATCGAAATAGTGGGATTTTTTATTCCTCTAATTTTGAACGTAACTTGTTCTAGTATGGTGCTA AGAACTTTAAATAAACCTGTTACATTAAGTAGAAGCAAAATAAACAAAACTAAGGTTTTAAAAATGATTTTTGTTCATTTGGTCATATTCTGTTTCTGTTTTGTGCCTTATAATATCAATCTTATTTT ATATTCTCTTATGAGAACACATACACTTGTTAATTGCTCAGTAGTGGCAGCTGTAAGGACAATGTATCCCATCACTCTCTGCATTGCTGTTTCCAACTGTTGTTTTGACCCTATAGTTTACTATTTTA CATCGGACACTATTCAGAATTCAATAAAAATGAAAAACTGGTCTGTTAGGAGAACTGACTACAGATTCTCTGAAGTTCAAGGCACAGAGAATTTTATTCAACACAATCTACAGACCTTAAAAAGTAAG ATATTTGACAATGAATCTACAATATAAGCTGCCTGAACTAAAACCACTGGAACTTCACTGGGACAGAACCTCCAAGTTCCTTCAACTGTGAAAAGTGTTCTCTTGGAAAACTATTTCTCCTGA
hide sequence
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RefSeq Acc Id: |
XP_005330252 ⟸ XM_005330195 |
- UniProtKB: |
I3N3S0 (UniProtKB/TrEMBL) |
- Sequence: |
MVSANSSQCPYDDSFKYTLYGCMFSMVFVLGLISNCVAIYIFICTLKVRNETTTYMINLAMSDLLFVFTLPFRIFYFATRNWPFGDLLCKISVMLFYTNMYGSILFLTCISVDRFLAIVYPFKSKTLR TKRNAKFVCIAVWLTVIGGSAPAVFFQSTHSRGNNTSEACFENFPEATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMVLRTLNKPVTLSRSKINKTKVLKMIFVHLVIFCFCFVPYNINLILYSLMR THTLVNCSVVAAVRTMYPITLCIAVSNCCFDPIVYYFTSDTIQNSIKMKNWSVRRTDYRFSEVQGTENFIQHNLQTLKSKIFDNESTI
hide sequence
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Ensembl Acc Id: |
ENSSTOP00000019016 ⟸ ENSSTOT00000019674 |
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