Atp13a1 (ATPase 13A1) - Rat Genome Database

Name: Atp13a1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Atp13a1 (ATPase 13A1) Ictidomys tridecemlineatus

Analyze

Symbol:

Atp13a1

Name:

ATPase 13A1

RGD ID:

12709056

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATPase-coupled monoatomic cation transmembrane transporter activity (inferred); INVOLVED IN extraction of mislocalized protein from ER membrane (inferred); intracellular calcium ion homeostasis (inferred); monoatomic cation transmembrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATPase 13A1, transcript variant X1; ATPase 13A1, transcript variant X2; ATPase 13A1, transcript variant X3; endoplasmic reticulum transmembrane helix translocase; manganese-transporting ATPase 13A1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP13A1 (ATPase 13A1)	NCBI	Ortholog
Mus musculus (house mouse):	Atp13a1 (ATPase type 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Atp13a1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp13a1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP13A1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP13A1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP13A1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP13A1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp13a1 (ATPase 13A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,293,877 - 202,310,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	1,842,480 - 1,859,389 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	1,842,469 - 1,859,379 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

extraction of mislocalized protein from ER membrane (IEA)

intracellular calcium ion homeostasis (IEA)

monoatomic cation transmembrane transport (IEA)

transmembrane transport (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATPase-coupled monoatomic cation transmembrane transporter activity (IEA)

membrane protein dislocase activity (IEA)

P-type ion transporter activity (IEA)

P-type transmembrane transporter activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Atp13a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,293,877 - 202,310,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	1,842,480 - 1,859,389 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	1,842,469 - 1,859,379 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP13A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	19,645,198 - 19,663,676 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	19,645,198 - 19,663,676 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	19,756,007 - 19,774,485 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	19,617,009 - 19,633,925 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	19,617,008 - 19,633,925	NCBI
Celera	19	19,660,082 - 19,678,574 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	19,318,428 - 19,336,925 (-)	NCBI		HuRef
CHM1_1	19	19,757,093 - 19,775,596 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,782,708 - 19,801,186 (-)	NCBI		T2T-CHM13v2.0

Atp13a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,243,813 - 70,260,399 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,243,813 - 70,260,399 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	69,791,163 - 69,807,749 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	69,791,163 - 69,807,749 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,315,062 - 72,331,648 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	72,720,223 - 72,736,734 (+)	NCBI		MGSCv36	mm8
Celera	8	72,342,175 - 72,358,761 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	33.88	NCBI

Atp13a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,649,065 - 19,665,126 (-)	NCBI		GRCr8
mRatBN7.2	16	19,615,156 - 19,631,546 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,615,160 - 19,631,214 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,656,960 - 19,673,119 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,794,949 - 20,811,107 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,709,941 - 19,726,100 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	21,364,087 - 21,380,142 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	21,364,101 - 21,380,331 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	21,278,076 - 21,294,131 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	20,100,481 - 20,116,536 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	20,100,478 - 20,117,029 (-)	NCBI
Celera	16	19,804,187 - 19,820,230 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Atp13a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,365,646 - 2,378,253 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,365,605 - 2,378,459 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATP13A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	24,506,350 - 24,525,791 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	23,512,804 - 23,531,679 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	19,082,441 - 19,100,915 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	20,078,314 - 20,095,715 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	20,078,319 - 20,095,721 (-)	Ensembl	panpan1.1		panPan2

ATP13A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	43,618,574 - 43,634,999 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	43,618,589 - 43,635,000 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	43,534,160 - 43,550,585 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,104,027 - 44,120,452 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,104,015 - 44,120,460 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,341,948 - 43,358,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	43,751,241 - 43,767,666 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,027,140 - 44,043,565 (+)	NCBI		UU_Cfam_GSD_1.0

ATP13A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,267,709 - 58,285,378 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,267,489 - 58,285,383 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,410,649 - 58,428,080 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP13A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	18,103,954 - 18,122,230 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	18,103,942 - 18,115,580 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	1,176,785 - 1,195,082 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp13a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	2,369,461 - 2,382,647 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	2,369,302 - 2,382,364 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005332944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013361855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013361857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040290218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000007232 ⟹ ENSSTOP00000006461

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936596	1,842,480 - 1,859,389 (+)	Ensembl

RefSeq Acc Id:

XM_005332944 ⟹ XP_005333001

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	202,294,200 - 202,310,237 (+)	NCBI
SpeTri2.0	NW_004936596	1,843,336 - 1,859,376 (+)	NCBI

Sequence:

show sequence

CTCTGCCCGGAAACGAGCGCGGCGCTGGGAAAGATGGCGGCGGTGGGCAACACGGTTCCCTGCG
GGGCCGGGTCTTGTGGGGCCCGGCCCGACGGGCAGCCCAAGCCTGGGCTGCAGCCGCACGCGCT
CCTTGCTGCGGGGCCAGCGCTTATAGCAAGCGGCGACGAGTTGGTTGCCGCTGTGTGGCCATAC
CGGCGGCTCGCTCTGCTGCGGCGCCTCACCGTGCTGCCGTTCGCGGGTCTGCTCTACCCCGCGT
GGTTGGGCGCTGCGGCCGCCGGTTGCTGGGGCTGGGGCAGTAGCTGGGCTCAAATCCCCGAGGC
CGCGCTGCTTGTGCTGGCCACTATCTGCCTCGCGCACGCGCTCACCGTCCTCTCGGGGCATTGG
TCCGTGCACGCGCACTGCGCGCTCACCTGCACCCCGGAATACAACCCTAGCAAAGCGACCTTCG
TAAAAGTGGTACCGACCCCCAACAATGGCTCCACGGAGCTCGTGGCCCTGCATCGTGATGAGGG
TGAAGATGGGCTTGAAGTGCTGTCCTTTGAATTCCAAAAGATCAAGTATTCCTATGATGCTCTT
GAGAAAAAGCAATTCCTCCCTGTGTCCTTTCCTGTGGGAAACACCTTCTCATATTATCAGAGCA
ACAGAGGGTTCCAGGAAGATGCAGAGATCCGAGCAGCTGAGAAGAAATTTGGGAGCAACAAGGC
TGAGATGGTGGTGCCTGACTTCTCTGAGCTTTTTAAGGAGAGAGCCACAGCCCCCTTCTTTGTC
TTTCAGGTGTTCTGCGTGGGGCTCTGGTGTCTGGATGAGTACTGGTACTACAGTGTCTTCACAC
TGTCCATGCTGGTGGCTTTTGAGGCCTCGTTGGTGCAGCAACAGATGCGGAACATGTCAGAGAT
CCGGAAGATGGGCAATAAGCCCCACATGATACAGGTCTACCGAAACCGCAAGTGGAGGCCCATT
GCCAGTGATGAGATTGTTCCCGGGGACATTGTCTCCATTGGCCGCTCCCCCCAGGAAAACCTAG
TGCCCTGTGATGTGCTGCTGCTGCGGGGCCGCTGCATCGTGGATGAGGCCATGCTCACAGGGGA
GTCGGTGCCACAAATGAAGGAGCCAATTGAAGACCTTAACCCAGACCGGGTGCTGGACCTCCAA
GCTGACTCCCGGCTCCATGTCATCTTTGGGGGCACCAAGGTGGTACAACACATACCCCCACAGA
AGGCCACCACAGGCCTGAAGCCGGTTGACAATGGATGTGTGGCTTATGTCCTGCGTACTGGATT
CAACACTTCCCAGGGCAAGCTGCTGCGCACAATTCTCTTTGGGGTCAAGAGGGTGACCGCAAAC
AACCTGGAGACCTTCATTTTTATCCTTTTCCTCCTGGTCTTTGCCATTGCAGCGGCTGCCTATG
TGTGGATTGAAGGCACCAAGGACCCCAGCCGGAACCGCTACAAGCTGTTTCTGGAGTGCACCCT
GATCCTCACCTCGGTTGTACCCCCTGAACTGCCCATCGAGCTGTCCCTAGCTGTCAACACCTCC
CTCATTGCCCTGGCCAAGCTCTACATGTACTGCACGGAGCCCTTCCGGATCCCCTTTGCCGGCA
AGGTCGAGGTGTGCTGCTTTGACAAGACAGGAACCTTGACCAGTGACAGCTTAGTGGTGCGTGG
TGTGGCTGGGCTAAGAGATGGGAAGGAGGTGACACCAGTGTCCAGCATCCCTGTAGAAACACAC
CGTGCCCTGGCCTCATGCCACTCCCTTATGCAGCTTGATGATGGCACCCTTGTGGGTGACCCCC
TTGAGAAGGCCATGCTCACAGCCGTGGACTGGACACTGACCAAAGATGAGAAAGTATTCCCCCG
AAGTATTAAAACTCAGGGGCTGAAAATTCACCAGCGCTTTCATTTTGCCAGTGCCCTAAAACGA
ATGTCCGTGCTCGCCTCCTATGAGAAGCTCGGCTCCACTGACCTCTGCTACATCGCGGCTGTGA
AGGGGGCCCCTGAAACCCTGCACTCCATGTTTTCCCAGTGCCCGCCTGACTACCACCACATCCA
CACTGAGATCTCACGAGAAGGAGCCCGCGTCCTCGCACTGGGGTACAAGGAGCTAGGACACCTT
ACCCACCAGCAGGCCCGGGAGGTCAAGCGTGAAGCCCTGGAATGCAGCCTCAAGTTTGTCGGTT
TCATCGTGGTCTCCTGCCCGCTCAAGGCTGACTCCAAGGCTGTTATTCGAGAGATTCAGAATGC
ATCCCATCGGGTGGTCATGATCACAGGCGACAACCCACTCACTGCCTGCCACGTGGCCCAGGAG
TTGCACTTCATTGAAAAGGCCCACACGCTCATCCTGCAGCCTCCCTCAGACAAAGGCCAAATGT
GCGAGTGGCGTTCCATTGATGGCAGCATCGTGCTACCCCTGTCCCGGGGCTCCCCAAAGACATT
GGCCCTGGAGCATGCACTGTGCCTCACAGGTGATGGCCTGGCCCACCTTCAGGCCACCGACCCC
CAGCAGCTACTCCACATCATCCCCCACGTACAGGTGTTTGCCCGTGTGGCCCCCAAACAGAAGG
AATTTGTCATCACCAGTCTGAAGGAGCTGGGCTACGTGACCCTCATGTGTGGGGATGGCACTAA
CGACGTGGGCGCCCTGAAGCACGCCGATGTGGGTGTAGCACTCCTTGCCAATGCCCCTGAGAGA
GTCGTTGAGCGGCGACGGCGGCCCCGGGACAGCCCAGTTCTGAACAACAGTGGTATTAGGGCCA
CCTCCAGGACGGCCAAGCAGAGGTCGGGACTTCCATCTTCTGAGGAACCACCAACTTCCCAAAG
GGACCGCCTAAGCCAGGTGCTTCGGGACCTCGAGGATGAAAGCACACCTATTGTGAAATTGGGG
GACGCCAGCATCGCAGCACCGTTCACCTCTAAGCTCTCATCAATCCAGTGCATCTGCCACGTGA
TCAAGCAGGGCCGTTGCACATTGGTAACCACACTGCAGATGTTCAAGATCCTGGCACTCAATGC
CCTCATCCTGGCCTATAGCCAGAGTGTTTTGTACCTTGAAGGTGTCAAGTTCAGCGACTTCCAG
GCCACACTGCAGGGGCTGCTACTGGCTGGCTGCTTCCTCTTCATCTCTCGTTCCAAGCCCCTGA
AGACCCTGTCTCGAGAGCGACCCCTGCCCAATATCTTCAACCTATATACAATCCTCACGGTTAT
GCTCCAGTTCTTTGTGCACTTCCTGAGCCTTGTCTACCTGTACAGTGAGGCCCAGGCCCGAAGC
CCTGGGAAGCGGGAGCAGTTTGTGGACCTGTACAAGGAGTTTGAACCGACCCTGGTCAACAGCA
CTGTGTACATCATGGCCATGGCCATGCAGATGGCCACCTTCGCCATCAACTATAAGGGCCCACC
CTTCATGGAGAGCCTTCCCGAGAATAAGCCCCTGGTGTGGAGCCTGGCTGTGTCACTCCTGGCC
ATTGTTGGCCTGCTCCTCGGCTCCTCACCTGACTTCAACAGCCAGTTTGGCCTCGTGGACATCC
CTGTGGAGTTCAAGCTCGTCATCGCCCAGGTCCTGCTTCTGGACTTCTGCCTGGCGCTCCTGGC
CGACCGTGTCCTACAGTTCTTCCTGGGGACCCCAAAGCTGAAAGTGCCTTCCTGAGATGGCGGT
GCTGGTACCCACCGTCTACCCTGGCTGCCACCAGGCGGGAGCCCTGCCAGGGCCCCAGGAGGAA
ACAGTGTCCCCTACCCCTACCCCCATGGTGAGGCTTCCTGGCCTTGCCCTTGGAAGACTGAACT
GGGGCCCCCACAGCCCTCTGCTGGCCTGGCTTGTGAAAACAGCCCCTTTGTTAAATAAAGCAGC
ATCCAAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_013361855 ⟹ XP_013217309

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	202,293,877 - 202,310,240 (+)	NCBI
SpeTri2.0	NW_004936596	1,842,469 - 1,859,379 (+)	NCBI

Sequence:

show sequence

GCACACCCACAGCCCAGGTTAACAAGAACCACAAAAAACAGAAGCAAAACCAAAACCCAACAAT
AGAGCCCCCGAAATTGAAACATGCAATAAAAAATCTTAAAAGGAATTAAGAGAAATTGCCATAA
CACAGATACATTTAAAATATATTATTTTCTCACACATAGTAATTGTTTCATCCTATTAATTACT
ATTAATTGGCAGTGTTTAGTAGACCTATTTTAGTTGTGTTCAAATAATAGCATTTGTGCAACAC
TACAATTGAGTAATACATCATAATATATAATTTCACATAATCACCAATTTTCACTTTCTAATTT
TAAACTAGTGACTTTAGAGTGTATGTGTCTGTTATATTACGCTCTGATCAGGTATAGCTGTTCT
ACATCGGCTCTGTGGTCCGGCCAGTCCAGGAGGAGAGGCATCCCATCCCCTCCCTCACAAGCCC
CGCCCTCATGACAGGCCACGCCCCGTAACGGACCCAGTCCCTCAACTCCCCTCTTCCTAGACTG
GCCCCTTCTTCTCACTCTCCAGGCTCCGCCCCTCATGGCTGGAGCTGGTGAAGTCTCCGAGGAA
GGCTCGCCTCTTCCTGTTCAGGTTGTCATGGTGGCGCTCAGCCTGCCCTCCCTGCTTTGTCCTT
TCCGGTCATAATCCGGCGTGGCAGCGGGGGAAGGCCGATTTAGGGCTTTGAGGCCCTGTCATGG
CGACGCCTTTTCTCTCCTTCCGACCATAGGCTGTTATGGCGGCTCCCTGAGTAACCACTTCCGG
ACCCAGCCTTCCTGGTTGCCCTGGTGCTTCCTACTGCCAGGTCTACCATGGCGGTGATCGGGGT
TCACCGGAAGTAACATATCGGAAGTGAGGCGGTGCCTCTGCCCGGAAACGAGCGCGGCGCTGGG
AAAGATGGCGGCGGTGGGCAACACGGTTCCCTGCGGGGCCGGGTCTTGTGGGGCCCGGCCCGAC
GGGCAGCCCAAGCCTGGGCTGCAGCCGCACGCGCTCCTTGCTGCGGGGCCAGCGCTTATAGCAA
GCGGCGACGAGTTGGTTGCCGCTGTGTGGCCATACCGGCGGCTCGCTCTGCTGCGGCGCCTCAC
CGTGCTGCCGTTCGCGGGTCTGCTCTACCCCGCGTGGTTGGGCGCTGCGGCCGCCGGTTGCTGG
GGCTGGGGCAGTAGCTGGGCTCAAATCCCCGAGGCCGCGCTGCTTGTGCTGGCCACTATCTGCC
TCGCGCACGCGCTCACCGTCCTCTCGGGGCATTGGTCCGTGCACGCGCACTGCGCGCTCACCTG
CACCCCGGAATACAACCCTAGCAAAGCGACCTTCGTAAAAGTGGTACCGACCCCCAACAATGGC
TCCACGGAGCTCGTGGCCCTGCATCGTGATGAGGGTGAAGATGGGCTTGAAGTGCTGTCCTTTG
AATTCCAAAAGATCAAGTATTCCTATGATGCTCTTGAGAAAAAGCAATTCCTCCCTGTGTCCTT
TCCTGTGGGAAACACCTTCTCATATTATCAGAGCAACAGAGGGTTCCAGGAAGATGCAGAGATC
CGAGCAGCTGAGAAGAAATTTGGGAGCAACAAGGCTGAGATGGTGGTGCCTGACTTCTCTGAGC
TTTTTAAGGAGAGAGCCACAGCCCCCTTCTTTGTCTTTCAGGTGTTCTGCGTGGGGCTCTGGTG
TCTGGATGAGTACTGGTACTACAGTGTCTTCACACTGTCCATGCTGGTGGCTTTTGAGGCCTCG
TTGGTGCAGCAACAGATGCGGAACATGTCAGAGATCCGGAAGATGGGCAATAAGCCCCACATGA
TACAGGTCTACCGAAACCGCAAGTGGAGGCCCATTGCCAGTGATGAGATTGTTCCCGGGGACAT
TGTCTCCATTGGCCGCTCCCCCCAGGAAAACCTAGTGCCCTGTGATGTGCTGCTGCTGCGGGGC
CGCTGCATCGTGGATGAGGCCATGCTCACAGGGGAGTCGGTGCCACAAATGAAGGAGCCAATTG
AAGACCTTAACCCAGACCGGGTGCTGGACCTCCAAGCTGACTCCCGGCTCCATGTCATCTTTGG
GGGCACCAAGGTGGTACAACACATACCCCCACAGAAGGCCACCACAGGCCTGAAGCCGGTTGAC
AATGGATGTGTGGCTTATGTCCTGCGTACTGGATTCAACACTTCCCAGGGCAAGCTGCTGCGCA
CAATTCTCTTTGGGGTCAAGAGGGTGACCGCAAACAACCTGGAGACCTTCATTTTTATCCTTTT
CCTCCTGGTCTTTGCCATTGCAGCGGCTGCCTATGTGTGGATTGAAGGCACCAAGGACCCCAGC
CGGAACCGCTACAAGCTGTTTCTGGAGTGCACCCTGATCCTCACCTCGGTTGTACCCCCTGAAC
TGCCCATCGAGCTGTCCCTAGCTGTCAACACCTCCCTCATTGCCCTGGCCAAGCTCTACATGTA
CTGCACGGAGCCCTTCCGGATCCCCTTTGCCGGCAAGGTCGAGGTGTGCTGCTTTGACAAGACA
GGAACCTTGACCAGTGACAGCTTAGTGGTGCGTGGTGTGGCTGGGCTAAGAGATGGGAAGGAGG
TGACACCAGTGTCCAGCATCCCTGTAGAAACACACCGTGCCCTGGCCTCATGCCACTCCCTTAT
GCAGCTTGATGATGGCACCCTTGTGGGTGACCCCCTTGAGAAGGCCATGCTCACAGCCGTGGAC
TGGACACTGACCAAAGATGAGAAAGTATTCCCCCGAAGTATTAAAACTCAGGGGCTGAAAATTC
ACCAGCGCTTTCATTTTGCCAGTGCCCTAAAACGAATGTCCGTGCTCGCCTCCTATGAGAAGCT
CGGCTCCACTGACCTCTGCTACATCGCGGCTGTGAAGGGGGCCCCTGAAACCCTGCACTCCATG
TTTTCCCAGTGCCCGCCTGACTACCACCACATCCACACTGAGATCTCACGAGAAGGAGCCCGCG
TCCTCGCACTGGGGTACAAGGAGCTAGGACACCTTACCCACCAGCAGGCCCGGGAGGTCAAGCG
TGAAGCCCTGGAATGCAGCCTCAAGTTTGTCGGTTTCATCGTGGTCTCCTGCCCGCTCAAGGCT
GACTCCAAGGCTGTTATTCGAGAGATTCAGAATGCATCCCATCGGGTGGTCATGATCACAGGCG
ACAACCCACTCACTGCCTGCCACGTGGCCCAGGAGTTGCACTTCATTGAAAAGGCCCACACGCT
CATCCTGCAGCCTCCCTCAGACAAAGGCCAAATGTGCGAGTGGCGTTCCATTGATGGCAGCATC
GTGCTACCCCTGTCCCGGGGCTCCCCAAAGACATTGGCCCTGGAGCATGCACTGTGCCTCACAG
GTGATGGCCTGGCCCACCTTCAGGCCACCGACCCCCAGCAGCTACTCCACATCATCCCCCACGT
ACAGGTGTTTGCCCGTGTGGCCCCCAAACAGAAGGAATTTGTCATCACCAGTCTGAAGGAGCTG
GGCTACGTGACCCTCATGTGTGGGGATGGCACTAACGACGTGGGCGCCCTGAAGCACGCCGATG
TGGGTGTAGCACTCCTTGCCAATGCCCCTGAGAGAGTCGTTGAGCGGCGACGGCGGCCCCGGGA
CAGCCCAGTTCTGAACAACAGTGGTATTAGGGCCACCTCCAGGACGGCCAAGCAGAGGTCGGGA
CTTCCATCTTCTGAGGAACCACCAACTTCCCAAAGGGTGAGTCTCTGGAGGGAGATGATGGTAC
CCACTTTGGCCAGGGCTGATCCTCTGCCATCCAACCCACAGGACCGCCTAAGCCAGGTGCTTCG
GGACCTCGAGGATGAAAGCACACCTATTGTGAAATTGGGGGACGCCAGCATCGCAGCACCGTTC
ACCTCTAAGCTCTCATCAATCCAGTGCATCTGCCACGTGATCAAGCAGGGCCGTTGCACATTGG
TAACCACACTGCAGATGTTCAAGATCCTGGCACTCAATGCCCTCATCCTGGCCTATAGCCAGAG
TGTTTTGTACCTTGAAGGTGTCAAGTTCAGCGACTTCCAGGCCACACTGCAGGGGCTGCTACTG
GCTGGCTGCTTCCTCTTCATCTCTCGTTCCAAGCCCCTGAAGACCCTGTCTCGAGAGCGACCCC
TGCCCAATATCTTCAACCTATATACAATCCTCACGGTTATGCTCCAGTTCTTTGTGCACTTCCT
GAGCCTTGTCTACCTGTACAGTGAGGCCCAGGCCCGAAGCCCTGGGAAGCGGGAGCAGTTTGTG
GACCTGTACAAGGAGTTTGAACCGACCCTGGTCAACAGCACTGTGTACATCATGGCCATGGCCA
TGCAGATGGCCACCTTCGCCATCAACTATAAGGGCCCACCCTTCATGGAGAGCCTTCCCGAGAA
TAAGCCCCTGGTGTGGAGCCTGGCTGTGTCACTCCTGGCCATTGTTGGCCTGCTCCTCGGCTCC
TCACCTGACTTCAACAGCCAGTTTGGCCTCGTGGACATCCCTGTGGAGTTCAAGCTCGTCATCG
CCCAGGTCCTGCTTCTGGACTTCTGCCTGGCGCTCCTGGCCGACCGTGTCCTACAGTTCTTCCT
GGGGACCCCAAAGCTGAAAGTGCCTTCCTGAGATGGCGGTGCTGGTACCCACCGTCTACCCTGG
CTGCCACCAGGCGGGAGCCCTGCCAGGGCCCCAGGAGGAAACAGTGTCCCCTACCCCTACCCCC
ATGGTGAGGCTTCCTGGCCTTGCCCTTGGAAGACTGAACTGGGGCCCCCACAGCCCTCTGCTGG
CCTGGCTTGTGAAAACAGCCCCTTTGTTAAATAAAGCAGCATCCAAGATTTTAAGAA

hide sequence

RefSeq Acc Id:

XM_013361857 ⟹ XP_013217311

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	202,294,859 - 202,310,237 (+)	NCBI
SpeTri2.0	NW_004936596	1,843,774 - 1,859,376 (+)	NCBI

Sequence:

show sequence

GCCCGACCCCTGGCTCAGTTGGGCCTCGCCACGGATCCCAGCTGCAGCAATCTTGTAGGTCCCC
AGCACGTCCGGATCCTCCCCATCTGCTAGGACTGAGTCCCCATTGGCGCCCTCTACCCTTTGGC
TCAGGCTTAATCTTGACCCCGTTGCTGACTTGCTGTGCGATCCAGGTGTGGATTTATTTCGTTT
TCTCTGGGTACATTAATTTAAATTCAATAATGTCATACCTGTAAGACTTGTGCAGGGCTCAGCA
TATGTTGCTGTTTGATAGGACGTGTTAGTGCTAGCTCCCACACTGTCAAATACTCTGTTGTTTC
TCCAGAAACAGTCCTGCCTGCCTTCTGGAATGTCTCCTATTTTGATTTTCAAAGTGTGAGGCTA
GATCTGTGGGGAGGGTTTCCCCCATCTGTGATGCCTGGTCCTATAACCAAGTAACGCTGTGCAA
ATGTTCAGCCTCCTAGCTATGCTAGATCAAAAAAGCATGAAATGCAGTGAGTTGCAATGTTTAA
AGTGAGCTATTTGTGAGTAAGCAGCTTAATAGCTTGAAGTCTCATAATGACTATCTTTAAGGGT
GGTGATGGTGAGGACTACTCAGAATACAGTTGCAAGGCAGTGCATGTGACCCTCAGTCCAGAGT
ACTAAATGAATGAGTGCTGCTACAGAAGGTGTGACCATGAACTGCCCTAGATTGGCAGTTGACA
TCCAGTGACTACACCACCACCTGCTGTGCCTGCCTCATAACATTTGGATCCCTGGACCCTGAGG
TCTGCCTCCAGTGAAACTCCCTTCTAATCCCAGGTGTGTGTTGACCTCAAGAAGAGGAAAAGGG
GACAGCAACAGGAGTTGCAGGATGAGATAGAGCCACCTTCTTTGGCTCTTAATATGCATTGGAT
CCTCTTTCTCCTGACAGTGTGAACCCATTCTCCCCTCCAGTAAAACATCCCAGGGGAGAAACTT
CTGGGCTTGGTGACTTCTGTTGGTTCAATGAAAGACCCCAGCAATAGACAATTAAAGGAAGAGG
ATTTGAGGATTGTGACATTCTCCATCCACCCTCACTGGCTTTTAGCTGCCCTTTGGTCTTCAGC
TAAAACAGTGTAGCTGTGAACTTCCTTTCAAGGGAGGAGCTAAACAGCCTTGGAGTTAGGAGAG
ACTGATCTGGGTTTGCATCACAACTCAGATGGGTGGTTCTACTCTCTGAGTTTCAGTTTCTCCC
TCCTGTAAAGTGAGAACAGTAACACCTACCTCCAAGTGCAATTATAAAGAGCTGAAATGACATC
TGCAAAGTGCCTACCATGGAATCAGTACCATGTATTTTCTACTTTTCTCTCATGGCATTACCAG
AGTTCGTAGTTATATATTTACTGCTGTTTTATGCCTGCTACTGTGTCTACTCTACTCCCTTCAT
GGCAGTTTGTTAGAGTCATGACCATGCTCCTATCCCCTTCTTCTCCCCCCCAGTCATCACAGGG
TCTAGCAGAAAAGGAGGGTCTAACAGCAGCCATGGAAAGAATACAGCACACAGGATTGAGGGAG
TACTTCCTGTGTCTTAGGAATACAACCCTAGCAAAGCGACCTTCGTAAAAGTGGTACCGACCCC
CAACAATGGCTCCACGGAGCTCGTGGCCCTGCATCGTGATGAGGGTGAAGATGGGCTTGAAGTG
CTGTCCTTTGAATTCCAAAAGATCAAGTATTCCTATGATGCTCTTGAGAAAAAGCAATTCCTCC
CTGTGTCCTTTCCTGTGGGAAACACCTTCTCATATTATCAGAGCAACAGAGGGTTCCAGGAAGA
TGCAGAGATCCGAGCAGCTGAGAAGAAATTTGGGAGCAACAAGGCTGAGATGGTGGTGCCTGAC
TTCTCTGAGCTTTTTAAGGAGAGAGCCACAGCCCCCTTCTTTGTCTTTCAGGTGTTCTGCGTGG
GGCTCTGGTGTCTGGATGAGTACTGGTACTACAGTGTCTTCACACTGTCCATGCTGGTGGCTTT
TGAGGCCTCGTTGGTGCAGCAACAGATGCGGAACATGTCAGAGATCCGGAAGATGGGCAATAAG
CCCCACATGATACAGGTCTACCGAAACCGCAAGTGGAGGCCCATTGCCAGTGATGAGATTGTTC
CCGGGGACATTGTCTCCATTGGCCGCTCCCCCCAGGAAAACCTAGTGCCCTGTGATGTGCTGCT
GCTGCGGGGCCGCTGCATCGTGGATGAGGCCATGCTCACAGGGGAGTCGGTGCCACAAATGAAG
GAGCCAATTGAAGACCTTAACCCAGACCGGGTGCTGGACCTCCAAGCTGACTCCCGGCTCCATG
TCATCTTTGGGGGCACCAAGGTGGTACAACACATACCCCCACAGAAGGCCACCACAGGCCTGAA
GCCGGTTGACAATGGATGTGTGGCTTATGTCCTGCGTACTGGATTCAACACTTCCCAGGGCAAG
CTGCTGCGCACAATTCTCTTTGGGGTCAAGAGGGTGACCGCAAACAACCTGGAGACCTTCATTT
TTATCCTTTTCCTCCTGGTCTTTGCCATTGCAGCGGCTGCCTATGTGTGGATTGAAGGCACCAA
GGACCCCAGCCGGAACCGCTACAAGCTGTTTCTGGAGTGCACCCTGATCCTCACCTCGGTTGTA
CCCCCTGAACTGCCCATCGAGCTGTCCCTAGCTGTCAACACCTCCCTCATTGCCCTGGCCAAGC
TCTACATGTACTGCACGGAGCCCTTCCGGATCCCCTTTGCCGGCAAGGTCGAGGTGTGCTGCTT
TGACAAGACAGGAACCTTGACCAGTGACAGCTTAGTGGTGCGTGGTGTGGCTGGGCTAAGAGAT
GGGAAGGAGGTGACACCAGTGTCCAGCATCCCTGTAGAAACACACCGTGCCCTGGCCTCATGCC
ACTCCCTTATGCAGCTTGATGATGGCACCCTTGTGGGTGACCCCCTTGAGAAGGCCATGCTCAC
AGCCGTGGACTGGACACTGACCAAAGATGAGAAAGTATTCCCCCGAAGTATTAAAACTCAGGGG
CTGAAAATTCACCAGCGCTTTCATTTTGCCAGTGCCCTAAAACGAATGTCCGTGCTCGCCTCCT
ATGAGAAGCTCGGCTCCACTGACCTCTGCTACATCGCGGCTGTGAAGGGGGCCCCTGAAACCCT
GCACTCCATGTTTTCCCAGTGCCCGCCTGACTACCACCACATCCACACTGAGATCTCACGAGAA
GGAGCCCGCGTCCTCGCACTGGGGTACAAGGAGCTAGGACACCTTACCCACCAGCAGGCCCGGG
AGGTCAAGCGTGAAGCCCTGGAATGCAGCCTCAAGTTTGTCGGTTTCATCGTGGTCTCCTGCCC
GCTCAAGGCTGACTCCAAGGCTGTTATTCGAGAGATTCAGAATGCATCCCATCGGGTGGTCATG
ATCACAGGCGACAACCCACTCACTGCCTGCCACGTGGCCCAGGAGTTGCACTTCATTGAAAAGG
CCCACACGCTCATCCTGCAGCCTCCCTCAGACAAAGGCCAAATGTGCGAGTGGCGTTCCATTGA
TGGCAGCATCGTGCTACCCCTGTCCCGGGGCTCCCCAAAGACATTGGCCCTGGAGCATGCACTG
TGCCTCACAGGTGATGGCCTGGCCCACCTTCAGGCCACCGACCCCCAGCAGCTACTCCACATCA
TCCCCCACGTACAGGTGTTTGCCCGTGTGGCCCCCAAACAGAAGGAATTTGTCATCACCAGTCT
GAAGGAGCTGGGCTACGTGACCCTCATGTGTGGGGATGGCACTAACGACGTGGGCGCCCTGAAG
CACGCCGATGTGGGTGTAGCACTCCTTGCCAATGCCCCTGAGAGAGTCGTTGAGCGGCGACGGC
GGCCCCGGGACAGCCCAGTTCTGAACAACAGTGGTATTAGGGCCACCTCCAGGACGGCCAAGCA
GAGGTCGGGACTTCCATCTTCTGAGGAACCACCAACTTCCCAAAGGGACCGCCTAAGCCAGGTG
CTTCGGGACCTCGAGGATGAAAGCACACCTATTGTGAAATTGGGGGACGCCAGCATCGCAGCAC
CGTTCACCTCTAAGCTCTCATCAATCCAGTGCATCTGCCACGTGATCAAGCAGGGCCGTTGCAC
ATTGGTAACCACACTGCAGATGTTCAAGATCCTGGCACTCAATGCCCTCATCCTGGCCTATAGC
CAGAGTGTTTTGTACCTTGAAGGTGTCAAGTTCAGCGACTTCCAGGCCACACTGCAGGGGCTGC
TACTGGCTGGCTGCTTCCTCTTCATCTCTCGTTCCAAGCCCCTGAAGACCCTGTCTCGAGAGCG
ACCCCTGCCCAATATCTTCAACCTATATACAATCCTCACGGTTATGCTCCAGTTCTTTGTGCAC
TTCCTGAGCCTTGTCTACCTGTACAGTGAGGCCCAGGCCCGAAGCCCTGGGAAGCGGGAGCAGT
TTGTGGACCTGTACAAGGAGTTTGAACCGACCCTGGTCAACAGCACTGTGTACATCATGGCCAT
GGCCATGCAGATGGCCACCTTCGCCATCAACTATAAGGGCCCACCCTTCATGGAGAGCCTTCCC
GAGAATAAGCCCCTGGTGTGGAGCCTGGCTGTGTCACTCCTGGCCATTGTTGGCCTGCTCCTCG
GCTCCTCACCTGACTTCAACAGCCAGTTTGGCCTCGTGGACATCCCTGTGGAGTTCAAGCTCGT
CATCGCCCAGGTCCTGCTTCTGGACTTCTGCCTGGCGCTCCTGGCCGACCGTGTCCTACAGTTC
TTCCTGGGGACCCCAAAGCTGAAAGTGCCTTCCTGAGATGGCGGTGCTGGTACCCACCGTCTAC
CCTGGCTGCCACCAGGCGGGAGCCCTGCCAGGGCCCCAGGAGGAAACAGTGTCCCCTACCCCTA
CCCCCATGGTGAGGCTTCCTGGCCTTGCCCTTGGAAGACTGAACTGGGGCCCCCACAGCCCTCT
GCTGGCCTGGCTTGTGAAAACAGCCCCTTTGTTAAATAAAGCAGCATCCAAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_040290218 ⟹ XP_040146152

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	202,294,641 - 202,310,237 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005333001	(Get FASTA)	NCBI Sequence Viewer
	XP_013217309	(Get FASTA)	NCBI Sequence Viewer
	XP_013217311	(Get FASTA)	NCBI Sequence Viewer
	XP_040146152	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006461.2
GenBank Protein	KAG3279848	(Get FASTA)	NCBI Sequence Viewer
	KAG3279849	(Get FASTA)	NCBI Sequence Viewer
	KAG3279850	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013217309 ⟸ XM_013361855

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAVGNTVPCGAGSCGARPDGQPKPGLQPHALLAAGPALIASGDELVAAVWPYRRLALLRRLTV
LPFAGLLYPAWLGAAAAGCWGWGSSWAQIPEAALLVLATICLAHALTVLSGHWSVHAHCALTCT
PEYNPSKATFVKVVPTPNNGSTELVALHRDEGEDGLEVLSFEFQKIKYSYDALEKKQFLPVSFP
VGNTFSYYQSNRGFQEDAEIRAAEKKFGSNKAEMVVPDFSELFKERATAPFFVFQVFCVGLWCL
DEYWYYSVFTLSMLVAFEASLVQQQMRNMSEIRKMGNKPHMIQVYRNRKWRPIASDEIVPGDIV
SIGRSPQENLVPCDVLLLRGRCIVDEAMLTGESVPQMKEPIEDLNPDRVLDLQADSRLHVIFGG
TKVVQHIPPQKATTGLKPVDNGCVAYVLRTGFNTSQGKLLRTILFGVKRVTANNLETFIFILFL
LVFAIAAAAYVWIEGTKDPSRNRYKLFLECTLILTSVVPPELPIELSLAVNTSLIALAKLYMYC
TEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGVAGLRDGKEVTPVSSIPVETHRALASCHSLMQ
LDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRSIKTQGLKIHQRFHFASALKRMSVLASYEKLG
STDLCYIAAVKGAPETLHSMFSQCPPDYHHIHTEISREGARVLALGYKELGHLTHQQAREVKRE
ALECSLKFVGFIVVSCPLKADSKAVIREIQNASHRVVMITGDNPLTACHVAQELHFIEKAHTLI
LQPPSDKGQMCEWRSIDGSIVLPLSRGSPKTLALEHALCLTGDGLAHLQATDPQQLLHIIPHVQ
VFARVAPKQKEFVITSLKELGYVTLMCGDGTNDVGALKHADVGVALLANAPERVVERRRRPRDS
PVLNNSGIRATSRTAKQRSGLPSSEEPPTSQRVSLWREMMVPTLARADPLPSNPQDRLSQVLRD
LEDESTPIVKLGDASIAAPFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSV
LYLEGVKFSDFQATLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFFVHFLS
LVYLYSEAQARSPGKREQFVDLYKEFEPTLVNSTVYIMAMAMQMATFAINYKGPPFMESLPENK
PLVWSLAVSLLAIVGLLLGSSPDFNSQFGLVDIPVEFKLVIAQVLLLDFCLALLADRVLQFFLG
TPKLKVPS

hide sequence

RefSeq Acc Id:	XP_005333001 ⟸ XM_005332944
- Peptide Label:	isoform X2
- UniProtKB:	I3M9C2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAVGNTVPCGAGSCGARPDGQPKPGLQPHALLAAGPALIASGDELVAAVWPYRRLALLRRLTV LPFAGLLYPAWLGAAAAGCWGWGSSWAQIPEAALLVLATICLAHALTVLSGHWSVHAHCALTCT PEYNPSKATFVKVVPTPNNGSTELVALHRDEGEDGLEVLSFEFQKIKYSYDALEKKQFLPVSFP VGNTFSYYQSNRGFQEDAEIRAAEKKFGSNKAEMVVPDFSELFKERATAPFFVFQVFCVGLWCL DEYWYYSVFTLSMLVAFEASLVQQQMRNMSEIRKMGNKPHMIQVYRNRKWRPIASDEIVPGDIV SIGRSPQENLVPCDVLLLRGRCIVDEAMLTGESVPQMKEPIEDLNPDRVLDLQADSRLHVIFGG TKVVQHIPPQKATTGLKPVDNGCVAYVLRTGFNTSQGKLLRTILFGVKRVTANNLETFIFILFL LVFAIAAAAYVWIEGTKDPSRNRYKLFLECTLILTSVVPPELPIELSLAVNTSLIALAKLYMYC TEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGVAGLRDGKEVTPVSSIPVETHRALASCHSLMQ LDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRSIKTQGLKIHQRFHFASALKRMSVLASYEKLG STDLCYIAAVKGAPETLHSMFSQCPPDYHHIHTEISREGARVLALGYKELGHLTHQQAREVKRE ALECSLKFVGFIVVSCPLKADSKAVIREIQNASHRVVMITGDNPLTACHVAQELHFIEKAHTLI LQPPSDKGQMCEWRSIDGSIVLPLSRGSPKTLALEHALCLTGDGLAHLQATDPQQLLHIIPHVQ VFARVAPKQKEFVITSLKELGYVTLMCGDGTNDVGALKHADVGVALLANAPERVVERRRRPRDS PVLNNSGIRATSRTAKQRSGLPSSEEPPTSQRDRLSQVLRDLEDESTPIVKLGDASIAAPFTSK LSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLEGVKFSDFQATLQGLLLAGC FLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFFVHFLSLVYLYSEAQARSPGKREQFVDLY KEFEPTLVNSTVYIMAMAMQMATFAINYKGPPFMESLPENKPLVWSLAVSLLAIVGLLLGSSPD FNSQFGLVDIPVEFKLVIAQVLLLDFCLALLADRVLQFFLGTPKLKVPS hide sequence

RefSeq Acc Id:

XP_013217311 ⟸ XM_013361857

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVVPDFSELFKERATAPFFVFQVFCVGLWCLDEYWYYSVFTLSMLVAFEASLVQQQMRNMSEIR
KMGNKPHMIQVYRNRKWRPIASDEIVPGDIVSIGRSPQENLVPCDVLLLRGRCIVDEAMLTGES
VPQMKEPIEDLNPDRVLDLQADSRLHVIFGGTKVVQHIPPQKATTGLKPVDNGCVAYVLRTGFN
TSQGKLLRTILFGVKRVTANNLETFIFILFLLVFAIAAAAYVWIEGTKDPSRNRYKLFLECTLI
LTSVVPPELPIELSLAVNTSLIALAKLYMYCTEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGV
AGLRDGKEVTPVSSIPVETHRALASCHSLMQLDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRS
IKTQGLKIHQRFHFASALKRMSVLASYEKLGSTDLCYIAAVKGAPETLHSMFSQCPPDYHHIHT
EISREGARVLALGYKELGHLTHQQAREVKREALECSLKFVGFIVVSCPLKADSKAVIREIQNAS
HRVVMITGDNPLTACHVAQELHFIEKAHTLILQPPSDKGQMCEWRSIDGSIVLPLSRGSPKTLA
LEHALCLTGDGLAHLQATDPQQLLHIIPHVQVFARVAPKQKEFVITSLKELGYVTLMCGDGTND
VGALKHADVGVALLANAPERVVERRRRPRDSPVLNNSGIRATSRTAKQRSGLPSSEEPPTSQRD
RLSQVLRDLEDESTPIVKLGDASIAAPFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNAL
ILAYSQSVLYLEGVKFSDFQATLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVML
QFFVHFLSLVYLYSEAQARSPGKREQFVDLYKEFEPTLVNSTVYIMAMAMQMATFAINYKGPPF
MESLPENKPLVWSLAVSLLAIVGLLLGSSPDFNSQFGLVDIPVEFKLVIAQVLLLDFCLALLAD
RVLQFFLGTPKLKVPS

hide sequence

RefSeq Acc Id:	XP_040146152 ⟸ XM_040290218
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000006461 ⟸ ENSSTOT00000007232

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007205	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007232.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.1110.10	UniProtKB/TrEMBL
	3.40.50.1000	UniProtKB/TrEMBL
	Calcium-transporting ATPase, cytoplasmic transduction domain A	UniProtKB/TrEMBL
InterPro	ATPase_P-typ_cyto_dom_N	UniProtKB/TrEMBL
	ATPase_P-typ_P_site	UniProtKB/TrEMBL
	ATPase_P-typ_TM_dom_sf	UniProtKB/TrEMBL
	ATPase_P-typ_transduc_dom_A_sf	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	HAD_sf	UniProtKB/TrEMBL
	P-type_TPase_V	UniProtKB/TrEMBL
	P5A-type_ATPase	UniProtKB/TrEMBL
	P_typ_ATPase	UniProtKB/TrEMBL
	P_typ_ATPase_HD_dom	UniProtKB/TrEMBL
NCBI Gene	Atp13a1	ENTREZGENE
PANTHER	CATION-TRANSPORTING ATPASE-RELATED	UniProtKB/TrEMBL
	ENDOPLASMIC RETICULUM TRANSMEMBRANE HELIX TRANSLOCASE	UniProtKB/TrEMBL
Pfam	E1-E2_ATPase	UniProtKB/TrEMBL
PRINTS	CATATPASE	UniProtKB/TrEMBL
PROSITE	ATPASE_E1_E2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56784	UniProtKB/TrEMBL
	SSF81653	UniProtKB/TrEMBL
	SSF81660	UniProtKB/TrEMBL
	SSF81665	UniProtKB/TrEMBL
UniProt	I3M9C2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar