Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Atp13a1 (ATPase 13A1) Rattus norvegicus
Analyze
Symbol: Atp13a1
Name: ATPase 13A1
Description: Predicted to have ATP binding activity; ATPase activity; and metal ion binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to localize to integral component of membrane. Orthologous to human ATP13A1 (ATPase 13A1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Atp13a; ATPase type 13A; ATPase type 13A1; LOC290673; manganese-transporting ATPase 13A1; probable cation-transporting ATPase 13A1
Orthologs:
Homo sapiens (human) : ATP13A1 (ATPase 13A1)  HGNC  Alliance
Mus musculus (house mouse) : Atp13a1 (ATPase type 13A1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atp13a1 (ATPase 13A1)
Pan paniscus (bonobo/pygmy chimpanzee) : ATP13A1 (ATPase 13A1)
Canis lupus familiaris (dog) : ATP13A1 (ATPase 13A1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atp13a1 (ATPase 13A1)
Sus scrofa (pig) : ATP13A1 (ATPase 13A1)
Chlorocebus sabaeus (African green monkey) : ATP13A1 (ATPase 13A1)
Heterocephalus glaber (naked mole-rat) : Atp13a1 (ATPase 13A1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01621,364,087 - 21,380,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,364,101 - 21,380,331 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01621,278,076 - 21,294,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41620,100,481 - 20,116,536 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11620,100,478 - 20,117,029 (-)NCBI
Celera1619,804,187 - 19,820,230 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Atp13a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306033
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-05-05
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.