Pwwp3b (PWWP domain containing 3B) - Rat Genome Database

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Gene: Pwwp3b (PWWP domain containing 3B) Ictidomys tridecemlineatus
Analyze
Symbol: Pwwp3b
Name: PWWP domain containing 3B
RGD ID: 12703220
Description: ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN extracellular exosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MUM1 like 1; MUM1 like 1, transcript variant X1; MUM1 like 1, transcript variant X10; MUM1 like 1, transcript variant X11; MUM1 like 1, transcript variant X2; MUM1 like 1, transcript variant X3; MUM1 like 1, transcript variant X4; MUM1 like 1, transcript variant X5; MUM1 like 1, transcript variant X6; MUM1 like 1, transcript variant X7; MUM1 like 1, transcript variant X8; MUM1 like 1, transcript variant X9; Mum1l1; PWWP domain-containing DNA repair factor 3B; PWWP domain-containing protein MUM1L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X79,161,233 - 79,197,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364998,461,475 - 8,463,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364998,459,934 - 8,496,670 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pwwp3bSquirrelautistic disorder  ISOPWWP3B (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Pwwp3bSquirrelautosomal hemophilia A  ISOPWWP3B (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Pwwp3bSquirrelfactor VIII deficiency  ISOPWWP3B (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Pwwp3bSquirrelsyndromic X-linked intellectual disability Lubs type  ISOPWWP3B (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pwwp3bSquirrelextracellular exosome located_inIEAPANTHER:PTN000771635150520179 TreeGrafterGO_REF:0000118



Pwwp3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X79,161,233 - 79,197,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364998,461,475 - 8,463,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364998,459,934 - 8,496,670 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PWWP3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X106,168,305 - 106,208,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX106,168,305 - 106,208,956 (+)EnsemblGRCh38hg38GRCh38
GRCh37X105,412,298 - 105,452,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X105,307,975 - 105,339,604 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X105,227,463 - 105,259,093NCBI
CeleraX105,886,895 - 105,927,546 (+)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX95,038,043 - 95,078,595 (+)NCBIHuRef
CHM1_1X105,323,601 - 105,364,259 (+)NCBICHM1_1
T2T-CHM13v2.0X104,600,239 - 104,640,937 (+)NCBIT2T-CHM13v2.0
Pwwp3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X138,110,726 - 138,139,084 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX138,110,791 - 138,139,084 (+)EnsemblGRCm39 Ensembl
GRCm38X139,209,977 - 139,238,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX139,210,042 - 139,238,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X135,744,583 - 135,772,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X134,581,349 - 134,584,696 (+)NCBIMGSCv36mm8
CeleraX122,478,656 - 122,507,180 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX61.29NCBI
Pwwp3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X107,593,062 - 107,627,215 (+)NCBIGRCr8
mRatBN7.2X102,804,416 - 102,838,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX102,804,520 - 102,838,574 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX104,967,304 - 104,971,099 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X108,466,051 - 108,469,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X106,037,460 - 106,041,255 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X110,375,434 - 110,411,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX110,404,022 - 110,411,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X110,414,581 - 110,450,324 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X126,912,086 - 126,915,881 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX103,600,510 - 103,604,305 (+)NCBICelera
Cytogenetic MapXq32NCBI
Pwwp3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555482,948,340 - 2,950,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555482,904,964 - 2,951,956 (+)NCBIChiLan1.0ChiLan1.0
PWWP3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X105,679,445 - 105,714,291 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X105,683,046 - 105,717,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X95,296,558 - 95,331,414 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X105,675,004 - 105,709,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PWWP3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X79,711,174 - 79,737,600 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX65,855,764 - 65,882,147 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X81,343,871 - 81,370,288 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX81,343,894 - 81,370,407 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X78,825,993 - 78,852,408 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X80,533,922 - 80,560,302 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X80,305,594 - 80,331,999 (+)NCBIUU_Cfam_GSD_1.0
PWWP3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX86,785,325 - 86,814,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X86,785,317 - 86,814,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X101,143,244 - 101,172,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PWWP3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X94,049,013 - 94,077,850 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX94,074,331 - 94,076,412 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606519,083,511 - 19,112,313 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pwwp3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480310,508,247 - 10,510,307 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480310,506,662 - 10,536,854 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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1 to 19 of 19 rows
RefSeq Transcripts XM_005323391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021725227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040283893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 19 of 19 rows

Ensembl Acc Id: ENSSTOT00000020011   ⟹   ENSSTOP00000016689
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364998,461,475 - 8,463,553 (-)Ensembl
RefSeq Acc Id: XM_021725218   ⟹   XP_021580893
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,352 - 79,197,953 (+)NCBI
SpeTri2.0NW_0049364998,459,934 - 8,496,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725219   ⟹   XP_021580894
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,352 - 79,197,953 (+)NCBI
SpeTri2.0NW_0049364998,459,934 - 8,496,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725220   ⟹   XP_021580895
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,352 - 79,197,953 (+)NCBI
SpeTri2.0NW_0049364998,459,934 - 8,496,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725223   ⟹   XP_021580898
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,352 - 79,197,953 (+)NCBI
SpeTri2.0NW_0049364998,459,934 - 8,496,659 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040283850   ⟹   XP_040139784
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,324 - 79,197,953 (+)NCBI
RefSeq Acc Id: XM_040283862   ⟹   XP_040139796
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,339 - 79,197,953 (+)NCBI
RefSeq Acc Id: XM_040283868   ⟹   XP_040139802
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,233 - 79,197,953 (+)NCBI
RefSeq Acc Id: XM_040283878   ⟹   XP_040139812
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,354 - 79,197,953 (+)NCBI
RefSeq Acc Id: XM_040283883   ⟹   XP_040139817
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,295 - 79,197,953 (+)NCBI
RefSeq Acc Id: XM_040283888   ⟹   XP_040139822
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,352 - 79,197,953 (+)NCBI
RefSeq Acc Id: XM_040283893   ⟹   XP_040139827
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X79,161,352 - 79,197,953 (+)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: XP_021580898   ⟸   XM_021725223
- UniProtKB: I3MX44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580895   ⟸   XM_021725220
- UniProtKB: I3MX44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580894   ⟸   XM_021725219
- UniProtKB: I3MX44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580893   ⟸   XM_021725218
- UniProtKB: I3MX44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139802   ⟸   XM_040283868
- UniProtKB: I3MX44 (UniProtKB/TrEMBL)
MUM1-like PWWP   PWWP



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000020338 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020011.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  6.10.300.20 UniProtKB/TrEMBL
InterPro MUM1-like_PWWP UniProtKB/TrEMBL
  PWP3A/B UniProtKB/TrEMBL
  PWP3A_3B_4_C UniProtKB/TrEMBL
  PWP3A_3B_4_N UniProtKB/TrEMBL
NCBI Gene Mum1l1 ENTREZGENE
PANTHER PTHR31333 UniProtKB/TrEMBL
  PWWP DOMAIN-CONTAINING DNA REPAIR FACTOR 3B UniProtKB/TrEMBL
Pfam MUM1-like_PWWP UniProtKB/TrEMBL
  PWP3A-B_C UniProtKB/TrEMBL
  PWP3A-B_N UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt I3MX44 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-30 Pwwp3b  PWWP domain containing 3B  Mum1l1  MUM1 like 1  Symbol and/or name change 5135510 APPROVED