Pwwp3b (PWWP domain containing 3B) - Rat Genome Database

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Gene: Pwwp3b (PWWP domain containing 3B) Heterocephalus glaber
Analyze
Symbol: Pwwp3b
Name: PWWP domain containing 3B
RGD ID: 18909662
Description: ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN extracellular exosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MUM1 like 1; Mum1l1; Mutated melanoma-associated antigen 1-like protein 1; PWWP domain-containing protein MUM1L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480310,508,247 - 10,510,307 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480310,506,662 - 10,536,854 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Pwwp3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480310,508,247 - 10,510,307 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480310,506,662 - 10,536,854 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PWWP3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X106,168,305 - 106,208,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX106,168,305 - 106,208,956 (+)EnsemblGRCh38hg38GRCh38
GRCh37X105,412,298 - 105,452,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X105,307,975 - 105,339,604 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X105,227,463 - 105,259,093NCBI
CeleraX105,886,895 - 105,927,546 (+)NCBICelera
Cytogenetic MapXq22.3NCBI
HuRefX95,038,043 - 95,078,595 (+)NCBIHuRef
CHM1_1X105,323,601 - 105,364,259 (+)NCBICHM1_1
T2T-CHM13v2.0X104,600,239 - 104,640,937 (+)NCBIT2T-CHM13v2.0
Pwwp3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X138,110,726 - 138,139,084 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX138,110,791 - 138,139,084 (+)EnsemblGRCm39 Ensembl
GRCm38X139,209,977 - 139,238,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX139,210,042 - 139,238,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X135,744,583 - 135,772,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X134,581,349 - 134,584,696 (+)NCBIMGSCv36mm8
CeleraX122,478,656 - 122,507,180 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX61.29NCBI
Pwwp3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X107,593,062 - 107,627,215 (+)NCBIGRCr8
mRatBN7.2X102,804,416 - 102,838,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX102,804,520 - 102,838,574 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX104,967,304 - 104,971,099 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X108,466,051 - 108,469,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X106,037,460 - 106,041,255 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X110,375,434 - 110,411,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX110,404,022 - 110,411,039 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X110,414,581 - 110,450,324 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X126,912,086 - 126,915,881 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX103,600,510 - 103,604,305 (+)NCBICelera
Cytogenetic MapXq32NCBI
Pwwp3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555482,948,340 - 2,950,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555482,904,964 - 2,951,956 (+)NCBIChiLan1.0ChiLan1.0
PWWP3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X105,679,445 - 105,714,291 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X105,683,046 - 105,717,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X95,296,558 - 95,331,414 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X105,675,004 - 105,709,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PWWP3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X79,711,174 - 79,737,600 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX65,855,764 - 65,882,147 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X81,343,871 - 81,370,288 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX81,343,894 - 81,370,407 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X78,825,993 - 78,852,408 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X80,533,922 - 80,560,302 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X80,305,594 - 80,331,999 (+)NCBIUU_Cfam_GSD_1.0
Pwwp3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X79,161,233 - 79,197,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364998,461,475 - 8,463,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364998,459,934 - 8,496,670 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PWWP3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX86,785,325 - 86,814,625 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X86,785,317 - 86,814,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X101,143,244 - 101,172,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PWWP3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X94,049,013 - 94,077,850 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX94,074,331 - 94,076,412 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606519,083,511 - 19,112,313 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000028012   ⟹   ENSHGLP00000027751
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480310,508,247 - 10,510,307 (-)Ensembl
RefSeq Acc Id: XM_004861473   ⟹   XP_004861530
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480310,506,662 - 10,536,854 (-)NCBI
RefSeq Acc Id: XM_013078334   ⟹   XP_012933788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480310,506,662 - 10,514,337 (-)NCBI
RefSeq Acc Id: XM_021241602   ⟹   XP_021097261
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480310,506,662 - 10,536,854 (-)NCBI
RefSeq Acc Id: XM_021241603   ⟹   XP_021097262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480310,506,662 - 10,530,231 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004861530   ⟸   XM_004861473
- UniProtKB: G5BS64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097261   ⟸   XM_021241602
- UniProtKB: G5BS64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097262   ⟸   XM_021241603
- UniProtKB: G5BS64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933788   ⟸   XM_013078334
- UniProtKB: G5BS64 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027751   ⟸   ENSHGLT00000028012


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019802 Ensembl, ENTREZGENE
  ENSHGLG00100044564 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000028012 ENTREZGENE
  ENSHGLT00100028088 UniProtKB/TrEMBL
  ENSHGLT00100043739 UniProtKB/TrEMBL
  ENSHGLT00100045431 UniProtKB/TrEMBL
  ENSHGLT00100080579 UniProtKB/TrEMBL
  ENSHGLT00100081709 UniProtKB/TrEMBL
  ENSHGLT00100090293 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  6.10.300.20 UniProtKB/TrEMBL
InterPro MUM1-like_PWWP UniProtKB/TrEMBL
  PWP3A/B UniProtKB/TrEMBL
  PWP3A_3B_4_C UniProtKB/TrEMBL
  PWP3A_3B_4_N UniProtKB/TrEMBL
KEGG Report hgl:101699772 UniProtKB/TrEMBL
NCBI Gene Pwwp3b ENTREZGENE
PANTHER PTHR31333 UniProtKB/TrEMBL
  PWWP DOMAIN-CONTAINING DNA REPAIR FACTOR 3B UniProtKB/TrEMBL
Pfam MUM1-like_PWWP UniProtKB/TrEMBL
  PWP3A-B_C UniProtKB/TrEMBL
  PWP3A-B_N UniProtKB/TrEMBL
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt G5BS64 ENTREZGENE, UniProtKB/TrEMBL