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Gene: Yae1 (YAE1 maturation factor of ABCE1) Ictidomys tridecemlineatus

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Symbol:

Yae1

Name:

YAE1 maturation factor of ABCE1

RGD ID:

12701499

Description:

INVOLVED IN protein maturation by [4Fe-4S] cluster transfer (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Yae1 domain containing 1; yae1 domain-containing protein 1; YAE1, ABCE1 maturation factor; Yae1d1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	95,863,219 - 95,872,267 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	15,074,922 - 15,078,932 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	15,074,956 - 15,079,089 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein maturation by [4Fe-4S] cluster transfer (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Yae1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	95,863,219 - 95,872,267 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	15,074,922 - 15,078,932 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	15,074,956 - 15,079,089 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YAE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	39,566,404 - 39,612,089 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	39,566,385 - 39,610,320 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	39,606,003 - 39,651,688 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	39,572,534 - 39,578,996 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	39,379,248 - 39,385,722	NCBI
Celera	7	39,593,539 - 39,600,016 (+)	NCBI		Celera
Cytogenetic Map	7	p14.1	NCBI
HuRef	7	39,490,080 - 39,496,557 (+)	NCBI		HuRef
CHM1_1	7	39,608,630 - 39,615,107 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	39,723,945 - 39,769,644 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	39,643,891 - 39,650,368 (+)	NCBI

Yae1d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	18,161,225 - 18,167,936 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	18,155,915 - 18,167,934 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	17,986,640 - 17,993,351 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	17,981,330 - 17,993,349 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	18,078,474 - 18,085,185 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	17,773,343 - 17,778,479 (-)	NCBI		MGSCv36	mm8
Celera	13	18,291,882 - 18,298,593 (-)	NCBI		Celera
Cytogenetic Map	13	A2	NCBI
cM Map	13	6.05	NCBI

Yae1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	51,722,582 - 51,729,098 (+)	NCBI		GRCr8
mRatBN7.2	17	47,027,033 - 47,033,549 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	47,027,019 - 47,033,546 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	50,216,874 - 50,223,386 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	54,219,797 - 54,226,309 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	48,322,446 - 48,328,962 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	49,610,548 - 49,617,065 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	49,610,548 - 49,617,065 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	47,667,539 - 47,674,056 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	54,911,892 - 54,918,408 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	54,914,739 - 54,918,754 (+)	NCBI
Celera	17	43,112,755 - 43,119,271 (+)	NCBI		Celera
Cytogenetic Map	17	q11	NCBI

Yae1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	3,897,913 - 3,904,544 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	3,900,245 - 3,904,430 (-)	NCBI	ChiLan1.0	ChiLan1.0

YAE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	48,822,313 - 48,868,088 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	97,147,058 - 97,192,828 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	44,623,036 - 44,668,803 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

YAE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	10,121,518 - 10,140,963 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	10,135,810 - 10,140,949 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	9,969,769 - 9,989,265 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	10,170,108 - 10,189,597 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	10,184,751 - 10,189,544 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	10,147,097 - 10,166,576 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	10,122,920 - 10,142,405 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	10,231,897 - 10,251,391 (-)	NCBI		UU_Cfam_GSD_1.0

YAE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	54,658,701 - 54,663,198 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	54,656,517 - 54,663,207 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	59,923,306 - 59,938,031 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YAE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	18,922,990 - 18,969,620 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666062	3,423,470 - 3,470,817 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Yae1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	21,390,701 - 21,395,956 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	21,390,940 - 21,395,408 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005319209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000021314 ⟹ ENSSTOP00000017783

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936478	15,074,922 - 15,078,932 (+)	Ensembl

RefSeq Acc Id:

XM_005319209 ⟹ XP_005319266

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	95,863,219 - 95,872,267 (+)	NCBI
SpeTri2.0	NW_004936478	15,074,956 - 15,079,089 (+)	NCBI

Sequence:

show sequence

GAACGTGCCTGCGCTTCCGGAGGTCTGCGACCCTTGCCGTTGCCTCGGTGATGTCGTGGGTTCA
AGCCGCGTCCTCCACTCCGAGCGCTGCTGACGAAGAGGACGTATTTGACGAGGAAGCGGACGAG
TCGCTCCTGGTGCAGCGAGAATGGCGGAATCACATGCAGAGACGAATCAAAGAAGGTTATAGAG
ATGGACTAGATGCTGGCAAAGCAGTTACTCTCCAACAGGGCTTCAATCAAGGTTATAAGGAAGG
TGCAGAAGTCATTATAAACTATGGACAACTCAGAGGAACATTGAGTGCTTTGCTCTCCTGGTGT
CACCTTCATGATAATAGTTCAACTTTGATCAGTGAAATAAATAGTCTTCTGGATGCAGTTGGCC
AATGTGAAGAGTATGTGCTCAAACATCTGAAATCAATCACTTCACAGCCTCATGTTGTAGATTT
ATTGGATTCCATTGAGGACATGGACCTTTGTCATGTAGTTCCAGACAAGAAAAAGATTGATGAA
ACTAAAGATGAAAGACTCTGTGAAAATAATGCTGAGTTTAACAAAAACTGTGGCAAGAGTCCTA
GTGGGAAAGATTGTTCATATTTAGAACGTTGTACAACACAAGAGCATTCACATTCTGAAAACCC
AAACCTTGCTTGGATTTTAGAACAGACAGCCAGTTTAGTTAAACAGTTGGGAATATCAACAGAT
GTTTTGCAGCACCTCAAACAACTATAAAAATTATGTTCCCTTTTCTAAGGAATGTCTCAGAGCA
TTTTGTTTCCTAATAGGGTAACCAGAATTAATACCATTTCTGCTCTGAACACTTCAGATGTTAT
CCTTCATGGAAGTTTGCAATGACTTCAACATTAACACTCTTATACTATAAGCTTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005319266	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017783.1
GenBank Protein	KAG3278165	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005319266 ⟸ XM_005319209

- UniProtKB:

I3N087 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSWVQAASSTPSAADEEDVFDEEADESLLVQREWRNHMQRRIKEGYRDGLDAGKAVTLQQGFNQ
GYKEGAEVIINYGQLRGTLSALLSWCHLHDNSSTLISEINSLLDAVGQCEEYVLKHLKSITSQP
HVVDLLDSIEDMDLCHVVPDKKKIDETKDERLCENNAEFNKNCGKSPSGKDCSYLERCTTQEHS
HSENPNLAWILEQTASLVKQLGISTDVLQHLKQL

hide sequence

Ensembl Acc Id:

ENSSTOP00000017783 ⟸ ENSSTOT00000021314

Protein Domains

Essential protein Yae1 N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000023547	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000021314.2	UniProtKB/TrEMBL
InterPro	Essential_protein_Yae1_N	UniProtKB/TrEMBL
	Yae1-like	UniProtKB/TrEMBL
NCBI Gene	Yae1d1	ENTREZGENE
PANTHER	PROTEIN YAE1 HOMOLOG	UniProtKB/TrEMBL
	PTHR18829	UniProtKB/TrEMBL
Pfam	Yae1_N	UniProtKB/TrEMBL
UniProt	I3N087	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-02-05	Yae1	YAE1 maturation factor of ABCE1		YAE1, ABCE1 maturation factor	Symbol and/or name change	5135510	APPROVED
2018-05-22	Yae1	YAE1, ABCE1 maturation factor	Yae1d1	Yae1 domain containing 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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