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Gene: Spaca6 (sperm acrosome associated 6) Ictidomys tridecemlineatus

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Symbol:

Spaca6

Name:

sperm acrosome associated 6

RGD ID:

12699189

Description:

INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); FOUND IN acrosomal vesicle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC101973506; sperm acrosome membrane-associated protein 6; uncharacterized LOC101973506; uncharacterized protein LOC101973506

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	4,780,414 - 4,789,940 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004937026	110,793 - 120,301 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fusion of sperm to egg plasma membrane involved in single fertilization (ISO)

Cellular Component

acrosomal vesicle (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Spaca6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	4,780,414 - 4,789,940 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004937026	110,793 - 120,301 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPACA6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	51,682,686 - 51,713,143 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	51,688,346 - 51,712,387 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	52,192,635 - 52,208,443 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	56,888,592 - 56,900,255 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	49,246,128 - 49,257,979 (+)	NCBI		Celera
Cytogenetic Map	19	q13.41	NCBI
HuRef	19	48,527,534 - 48,539,384 (+)	NCBI		HuRef
CHM1_1	19	52,198,390 - 52,210,241 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	54,769,841 - 54,800,507 (+)	NCBI		T2T-CHM13v2.0

Spaca6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	18,045,955 - 18,063,274 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	18,047,420 - 18,063,271 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	17,826,085 - 17,843,010 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	17,827,158 - 17,843,009 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	17,967,939 - 17,976,035 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	17,535,682 - 17,547,627 (+)	NCBI		MGSCv36	mm8
Celera	17	18,771,626 - 18,779,754 (+)	NCBI		Celera
Cytogenetic Map	17	A3.2	NCBI
cM Map	17	10.5	NCBI

Spaca6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	67,345,996 - 67,365,210 (+)	NCBI		GRCr8
mRatBN7.2	1	58,672,128 - 58,689,309 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	58,677,797 - 58,688,562 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	63,502,385 - 63,513,167 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	72,195,049 - 72,205,800 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	65,412,431 - 65,423,213 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	59,700,578 - 59,719,359 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	59,704,998 - 59,715,763 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	60,620,393 - 60,639,020 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	56,487,751 - 56,498,516 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	54,858,755 - 54,869,507 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

SPACA6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	57,732,111 - 57,756,596 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	59,652,351 - 59,680,872 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	48,632,681 - 48,656,124 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	57,513,910 - 57,529,817 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	57,517,865 - 57,529,817 (+)	Ensembl	panpan1.1		panPan2

SPACA6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	105,386,924 - 105,400,071 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	105,391,428 - 105,400,071 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	104,957,360 - 104,973,584 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	105,893,759 - 105,910,244 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	105,901,344 - 105,909,988 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	105,565,992 - 105,582,220 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	105,207,096 - 105,223,336 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	106,001,882 - 106,018,111 (-)	NCBI		UU_Cfam_GSD_1.0

SPACA6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	44,518,271 - 44,533,328 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	24,574,382 - 24,587,569 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spaca6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	3,342,155 - 3,355,572 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	3,340,420 - 3,354,076 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021721392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021721392 ⟹ XP_021577067

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	4,780,414 - 4,789,940 (-)	NCBI
SpeTri2.0	NW_004937026	110,793 - 120,301 (+)	NCBI

Sequence:

show sequence

TGGACCCTGGGTCTGAGGGAGGAAGTGGTTGGGCCCTAGACTCCTAGGTTTCTTGGGGAGGAGG
GGGCCGGGGGCCCGGACTCCTGGGTCCTGGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTC
GCCGCACACAAGCTCGTGTCTGTGGGTCTGTGTCGGGGGCTCACCATCGCGGCTGGGACCTCCC
GGCCCTCCCCACCCTCCCTGTCCCTCCTTGCCCATCTGTCCGGTCTGTCCACCTACCGCGCCCC
CCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCACGGAGATCACTATACGGCCTCC
TAGCTTTCCCCAGGCTGCGCCCTGCACAGGACGGGGCAGCAGGGACCCCAGGCCTGTACCACTG
CCCTGGGGACCTTGGAAGGAGCTGGGATGTCTGCCCTGTCCATGTCCCTGCACCTTGTCCTGGC
CCTTCCAGTCTCTCCCACCAGGAGGTGGGTTTGCTTCCCCTCTTGCACTCCTGAGTGGTTCCTG
GAGGTGCCCCCATCTCTCTGCAGGTTGTCTCTGGCTCTCTGGCTCTCACACACTCTGGTATCTC
TCCCTGTCTCTGTTTGGTCTTCTTTCTGGCACTCAGTGTCCCTGGGTCTGTCTTCGTCTTTCCC
CCATCCCCATCCTAGGGTCTATTGGGGCCACCACACACTGCATTGCCAGCCTCTGGGTCCCTGA
GACCCTTTAACCTGTGAGGACGTCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTAGCGTCTGGA
CCAACTACAAACCTAGGGACTGCAGGCTGACCCCTGGAACCCTTCCTGGGAGCCTGACATTTGA
CCACCAACTGGCCACTGCCCCTCCCCCACTGCAGTGACCTCACAAAGGTCACCAGCTTCTCCTA
GGCCTTGAGACCCTCCTAGATGGCCCCGCTGTCCCTGGTGAGCGCTGTCCTAACTGCCCTGCTG
GCCCTGCTGGTCCTCAGGGCATCCACCTGGGCCTGTCTCCTCTGCTTCACATCCTATGCTGAGC
GCTTCCGCCTCTGCAAGATGTGGGCCCGGGGCCCCCAGGTGGAGCAGTGCCAGGAGGCCTTCAC
GGCTGCCTTCAAGGGCCTCTCCAACGTGGAGATCAACTACTGGGAGAGAAGCCACCTGCAGGAC
GCCTTCACCCAGATGGCCCATTCCCTCCAGGAAGCGGCGGCCGCCCAGGGGTCCTTTGAGGACG
CCTTTCGTGCTGCTGCAGAAGAAATGAAGAAGGCCATTCTACAGCTTAAAGAAGTTCAGCCCTG
CATCCCTCCCTGCGGGGTCCAGGAGGTCGCCCGGCGTTTCTTTTGCAACAAGTGCTTCTCCAGT
CTATGCAAACTTCCGCTGGACTGTCCAGGTGAGGGGCTCCAAGTAGCGTTTCGGGAAGTGGTGA
GCTGGGCGCCGCGGGACGCGGAAATGATCGAGCCCTGGCGGCCCAGCCTGGGCGAGCTGCTGGC
CAGGCCCGAGGCTCTGACGCTGGGCAATCTCTGCATGCTCGCAGCTGTAGCTGCCCTGGCATCT
GCGATGGCGACCATGCTGGTGTGGATGTTCTTTCGATGGTACCTCAGTGGCAACTAACAAAGCT
ATCTCTTCCTTATCCTATTTCATCCTAAAATAAAGAATATATTTCGGA

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Protein Sequences


Protein RefSeqs	XP_021577067	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3255741	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021577067 ⟸ XM_021721392

- Sequence:

show sequence

MAPLSLVSAVLTALLALLVLRASTWACLLCFTSYAERFRLCKMWARGPQVEQCQEAFTAAFKGL
SNVEINYWERSHLQDAFTQMAHSLQEAAAAQGSFEDAFRAAAEEMKKAILQLKEVQPCIPPCGV
QEVARRFFCNKCFSSLCKLPLDCPGEGLQVAFREVVSWAPRDAEMIEPWRPSLGELLARPEALT
LGNLCMLAAVAALASAMATMLVWMFFRWYLSGN

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC101973506	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-13	Spaca6	sperm acrosome associated 6	LOC101973506	uncharacterized LOC101973506	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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