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Gene: Zhx3 (zinc fingers and homeoboxes 3) Ictidomys tridecemlineatus

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Symbol:

Zhx3

Name:

zinc fingers and homeoboxes 3

RGD ID:

12693649

Description:

ENCODES a protein that exhibits RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc fingers and homeoboxes 3, transcript variant X1; zinc fingers and homeoboxes 3, transcript variant X2; zinc fingers and homeoboxes protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	178,152,880 - 178,285,053 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	506,142 - 590,595 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	464,443 - 596,604 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zhx3	Squirrel	focal epilepsy		ISO	ZHX3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Focal-onset seizure	ClinVar	PMID:32581362

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zhx3	Squirrel	negative regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	negative regulation of transcription by RNA polymerase II	involved_in	ISO	Zhx3 (Rattus norvegicus)	9068941	PMID:17056598	GO_Central	PMID:17056598 and REF_RGD_ID:8554795
Zhx3	Squirrel	positive regulation of osteoblast differentiation	involved_in	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	regulation of transcription by RNA polymerase II	involved_in	IEA	PANTHER:PTN000397621	150520179		TreeGrafter	GO_REF:0000118

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zhx3	Squirrel	nucleoplasm	located_in	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	nucleus	located_in	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
Zhx3	Squirrel	nucleus	located_in	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	nucleus	located_in	IEA	PANTHER:PTN000397621	150520179		TreeGrafter	GO_REF:0000118
Zhx3	Squirrel	nucleus	located_in	IEA	ARBA:ARBA00026330	150520179		UniProt	GO_REF:0000117
Zhx3	Squirrel	nucleus	is_active_in	IEA	UniProtKB:Q8C0Q2 and ensembl:ENSMUSP00000099400	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
Zhx3	Squirrel	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zhx3	Squirrel	DNA binding	enables	IEA	InterPro:IPR001356	150520179		InterPro	GO_REF:0000002
Zhx3	Squirrel	DNA binding	enables	IEA	UniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371	150520179		UniProt	GO_REF:0000043
Zhx3	Squirrel	DNA binding	enables	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
Zhx3	Squirrel	DNA-binding transcription factor activity	enables	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	PANTHER:PTN000397621	150520179		TreeGrafter	GO_REF:0000118
Zhx3	Squirrel	protein binding	enables	ISO	UniProtKB:Q9UBE8	9068941	PMID:21516116 more ...	IntAct	PMID:21516116 more ...
Zhx3	Squirrel	protein binding	enables	ISO	PR:Q8C0C0	9068941	PMID:14659886	MGI	PMID:14659886
Zhx3	Squirrel	protein binding	enables	ISO	UniProtKB:P23511 and UniProtKB:Q9UKY1	9068941	PMID:12659632	UniProt	PMID:12659632
Zhx3	Squirrel	protein binding	enables	ISO	UniProtKB:O14901 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Zhx3	Squirrel	protein heterodimerization activity	enables	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	protein homodimerization activity	enables	IEA	UniProtKB:Q9H4I2 and ensembl:ENSP00000506788	150520179		Ensembl	GO_REF:0000107
Zhx3	Squirrel	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	ISO	Zhx3 (Rattus norvegicus)	9068941	PMID:17056598	NTNU_SB	PMID:17056598 and REF_RGD_ID:8554795
Zhx3	Squirrel	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043

PMID:22301074	PMID:30032202

Zhx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	178,152,880 - 178,285,053 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	506,142 - 590,595 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	464,443 - 596,604 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZHX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	41,178,455 - 41,317,731 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	41,178,448 - 41,317,731 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	39,807,095 - 39,946,371 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	39,240,503 - 39,362,153 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	39,240,502 - 39,362,153	NCBI
Celera	20	36,517,656 - 36,639,406 (-)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI
HuRef	20	36,545,141 - 36,666,992 (-)	NCBI		HuRef
CHM1_1	20	39,711,487 - 39,833,056 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	42,910,141 - 43,049,531 (-)	NCBI		T2T-CHM13v2.0

Zhx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	160,612,367 - 160,714,910 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	160,590,628 - 160,714,918 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	160,770,447 - 160,872,990 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	160,748,708 - 160,872,998 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	160,596,183 - 160,698,726 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	160,461,888 - 160,564,431 (-)	NCBI		MGSCv36	mm8
Celera	2	166,702,506 - 166,803,659 (-)	NCBI		Celera
Cytogenetic Map	2	H2	NCBI
cM Map	2	80.97	NCBI

Zhx3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	169,837,497 - 169,968,371 (-)	NCBI		GRCr8
mRatBN7.2	3	149,417,787 - 149,548,671 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	149,417,818 - 149,527,079 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	153,230,920 - 153,328,717 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	161,730,305 - 161,828,105 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	159,469,934 - 159,567,975 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	156,759,820 - 156,868,173 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	156,764,751 - 156,777,999 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	162,989,355 - 163,095,228 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	151,560,440 - 151,574,257 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	151,478,388 - 151,479,956 (-)	NCBI
Celera	3	148,096,662 - 148,110,463 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

Zhx3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	15,632,995 - 15,785,238 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	15,632,723 - 15,785,238 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZHX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	46,920,289 - 47,059,855 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	46,913,383 - 47,052,950 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	37,518,569 - 37,659,417 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	38,617,878 - 38,738,631 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	38,621,651 - 38,755,797 (-)	Ensembl	panpan1.1		panPan2

ZHX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	29,217,434 - 29,343,475 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	29,223,236 - 29,282,171 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	28,862,936 - 28,988,759 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	29,923,064 - 30,048,336 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	29,923,070 - 30,048,272 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	29,191,952 - 29,317,181 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	29,295,800 - 29,420,657 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	29,792,021 - 29,917,169 (-)	NCBI		UU_Cfam_GSD_1.0

ZHX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	43,848,352 - 43,962,992 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	43,848,345 - 43,963,084 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	49,248,058 - 49,252,810 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZHX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	22,455,121 - 22,508,182 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	22,456,123 - 22,590,134 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
ChlSab1.1 Ensembl	2	22,456,123 - 22,590,134 (+)	NCBI	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	71,273,983 - 71,414,095 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zhx3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624919	1,808,819 - 1,971,778 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624919	1,802,708 - 1,972,676 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_021729492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000011674 ⟹ ENSSTOP00000021696

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936561	506,142 - 590,595 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000034682 ⟹ ENSSTOP00000031533

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936561	584,907 - 589,252 (+)	Ensembl

RefSeq Acc Id:

XM_021729492 ⟹ XP_021585167

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	178,152,880 - 178,285,052 (-)	NCBI
SpeTri2.0	NW_004936561	464,443 - 596,604 (+)	NCBI

Sequence:

show sequence

CCCGCCCTCGCCCATCTGTCATCACTCCCGGCTCCAGGCTCGGGCTCCCTGGGGTCCCTGGGGTCATTGTGGTCCCAAGGGCCACACAATTGCGAAAGGAGCAGAATGGTTGGTGGCGGAACTGAATT
GCAACTGCAGAAGCAACAAGTGACCCTTTGAAGATGCATGTGCGACTGCATAAAGTGAAGGGGAAACTGGAAATAACAATGAAGTAAGGGAAAAGTATGCTTCTCAGGTTTAACTGAAAAATCTGCCC
TTGGAAGCTGTTTCTTGGGCCCTCATGGAGTAGTTGGAACTTTTCTGTCAGATCCTTGGGCTCCTGATCACCCAGAGTAGCCATGGCCAGCAAGAGGAAATCCACCACCCCATGCATGATCCCAGTAA
AGACCGTGGTGCTGCAGGATGCCATTGTGGAGGCCCAGCCAGCAGAGGCCTTGCCTGAAGTACCCCAGCAGGATCTTCCCCTAGAAGCACCTGCTACCAGCAGTGAGGCAGCTCAGAACTCCAGCAGT
ACTGATGGCTCCTCACTGGCCAATGGGCATCGTAACACTTTGGATGGCTATTTATATTCCTGTAAAGACTGTGATTTCAGATCCCAGGATATGACCCAATTTGTGGGACATATGAACTCAGAGCACAC
AGACTTTAATAAAGATCCAACTTTTATCTGCCCTGGGTGCAGTTTCCTGGCAAAAACCCCCGAGGGGCTTTCCCTGCACAATGCCAAGTGTCATTCAGGGGAAGCCAACTTTGTGTGGAATGTGGCCA
AGCCAGACAATCATGTAGTCGTGGAGCAGAGTATCCCTGAGAGCACCAGCACTCCTGACCCAGCAGGGGATCCCGGCGCTGAGGGGACTGATGGACAGGCTGAAATCATCATCACTAAGACTCCAATC
ATGAAGATAATGAAAGGCAAAGCTGAAGCCAAAAAAATCCATACTCTCAAAGAGAATGTCCCCAGCCAGCCTGTGGGTGAGGCCTTGCCAAAGCCATCAGCTGGGGAAGCAGAGGTGAAAGAGGGGGA
CCACACCTTTGTTAATGGGGCAGCTCCAGTCAGCCAGGCACCTGCCAGCTCTGCAAAGCCCCCCCATACCACCAATGGGCCCCTGATAGGAACGGTGCCAGTTCTGCCAGCTGGTATAGCACAGTTCC
TGTCTCTCCAGCAGCAGGCCCCAGTGCACACCCAGCACCATTCCCACCAGCCCCTGCCTACATCCAAGGCCCTTCCCAAAGTGATGATCCCCCTGAGCAGCATCCCAACATACAACGCGGCTATGGAC
TCCAACAGCTTCCTGAAAAACTCCTTTCACAAGTTCCCCTACCCAACCAAAGCCGAGCTCTGCTACCTGACTGTGGTGACCAAGTATCCAGAAGAACAGCTCAAGATCTGGTTCACAGCCCAGAGGCT
GAAGCAAGGTATCAGCTGGTCCCCTGAGGAGATCGAGGATGCCCGTAAAAAGATGTTCAATACAGTCATCCAGTCTGTGCCTCAGCCCACGATCACAGTTCTGAACACCCCCCTGGTTGCCAGTGCAG
GCAATGTCCAGCATCTCATCCAGGCCGCTCTCCCAGGCCACGTTGTCGGACAGCCAGAGGGCACAGCAGGAGGACTCCTGGTCAGCCAGCCACTGATGGCCAATGGGTTGCAAGCACCAACCTCGTCT
CTCCCCCTGGCAGTCACATCTGTTCCCAAGCAGCCAACAGTGGCACCTATTAACACCGTGTGTTCAAATACAACATCGGCCGTGAAGGTGGTCAACGCAGCCCAGTCTCTCCTCACAGCCTGCCCCAG
CATAACTTCCCAAGCCTTCCTCGATGCTAGCATCTACAAAAATAAGAAGTCTCATGAACAACTGTCTGCTCTGAAAGGGAGCTTCTGCCGGAACCAGTTCCCAGGGCAGAGTGAAGTCGAACATCTGA
CCAAAGTCACCGGCCTCAGCACTAGAGAGGTGCGGAAGTGGTTCAGTGATCGGAGGTACCATTGCCGGAACCTGAAGGGCTCCAGAGGCATGATGCCTGGGGATCACGGCTCCATTCTCATTGACTCT
GTGCCCGAGGTGCCCTTCTCCCCATCCTCCAAGGCTCCCGAGGTAACCTGCATCCCGACAGCCACCTCATTAGCAAGCCACCCTGCTGCCAAACGGCAATCCTGGCACCAGACTCCTGACTTCACGCC
CACCAAATACAAGGAGAGAGCCCCAGAGCAGCTCCGAGCCCTGGAGAGCAGCTTTGCCCAAAACCCACTCCCTCTAGACGAGGAACTGGACCGCCTGAGAAGTGAAACCAAGATGACCCGGAGAGAGA
TCGATAGCTGGTTTTCAGAGAAACGGAAAAAAGTGAATGCTGAGGAGACCAAGAAAGCCGATGGGACAGCCTGTCAGGAGGAAGGGGAGGCTGCTGAGGACGAGGCGGGAGAGGCGGAGTTGGCCAGT
GAACTGAGGGTTGCTGGTGAAAATGGTTCCCCAGAAATGCCCATCAGCCAGATATCAGCAGAGCGCAAAGTCAGCCCCATCAAAATCAATCTCAAGAACCTGAGGGTCACTGAAGCCAGTGGCAAGAG
TGAGCTTCCAGGGCTCCTTGCCTGTGAGCTGGAGGAGGATAGTTTGAACAAGCTGGCAGAGCAACCCCCTGGCAAAGTGAGCTACAAAAAGACGGCTCAGCAGCGACACTTGCTGCGGCAGCTCTTTG
TCCAGACCCAGTGGCCAAGCAACCAGGACTATGACTCCATCATGGCCCAGACGGGGCTGCCACGGCCAGAGGTGGTGCGCTGGTTTGGAGATAGTAGGTATGCTCTGAAGAATGGCCAGCTCAAGTGG
TACGAAGACTATAAGCGGGGCAACTTCCCACCGGGGCTGCTGGTTATCACCCCTGGAAACCGGGAGCTGCTGCAAGACTATTACATGACACACAAGATGTTGTATGAGGAAGACCTGCAGAACCTCTG
TGACAAGACCCAGATGAGCTCCCAGCAGGTCAAGCAGTGGTTTGCTGAGAAAATGGGTGAGGAGACCCGGGCCGTGGCAGACACAGGTGGTGAAGACCAGGGCCCTGGTACTGGTGAGCCTGCGGCAA
CTCACAAAGGGCTGGGTGACTCCTATTCAGAGGTGTCTGAGAACAGTGAGTCGTGGGAGCCCAGTGCACCTGAGGCCAGCTCAGAGCCCTTTGGTACATCAAGTCCCCAGGCTGGACTTCAGCTAGAA
ACAGACTGAAATTGATCCGGTTACTCTGAAGGACCGGCCCATCTGGGATGCTGCCTGCCACATGGAACAGCTGAACCTGCCTCTCTGCTGCCACATGTCGTTTCCATGGCCAGCCACTGGGTACCCAA
GAAGGCCTCCAGAGGCCTTGCAGATAGCCCAGAGCCTGTTGCCACCAAGCAAGTGGCAAGAAGGGGTTCTGCCAGTCCTTCCTCCCACAGTGTAGGACCTTCCCTTGGCCTCCCAGGGATAAAGCAGT
TCAGACTTCATATTCATAGACAGAATCAAGTTTTAACAAACATTGCCTCTCTACATTTAATAAAATATCAGATTACAAACACTTTCATTATATAGACACTTTGGTTAGCAAAGTGAGACGTTGTTCAC
ATCATCTCTGAATGTGCCGTTTGTCTGTTCTCTGGGGAGCACTGGAGCCACTGATGCCCTCACCTTCCATGGGCAGGCAGGGGTTAAAGATGCTCAGAACTGTATCCGGGCCCCCAGGCCTCTCTGCT
TTCCTCACAGAAGGATACCTTTGAAGAGCTCTCGGTCATGTTAAGTGGTGACCAGCCACTTTTGGAGCCAGGCTTGCTTTGTGGGCTGGTTGGTGCAGAGCCTGTTGTTGCCCTTAGGTCAGAAAATG
GCCTGGCTGTGCGAGTAGTGCTGGATCCTGGCCACTCTCCTCTTCAGCTGTTACCTTAATTCTGCTTTTTTTTTTTTTTTGGTGGGAGTTTGAATCATGGACCATAACTTTTCAGTTATCAGATCAAC
TAAAGAAATATTTGTTGTTAAGCCTAATATACTGACCTATGTGCCCCCCACCCCCACCGTGTTTTCTTTCTTTCTTTCTTTAATGTAGAAATGTAGACACCTTTATAGTGAGAGGAAAATGAAGAAAG
GAAATGGGGAGAAGGTGGGTAAAGAAAGGTATAGCTACAGCCTGCAGTCCTGGCTACTGCAGTGTTGAGAGCCCTGTCCCCCCACTTACTACAGAAGCTCCCAGGAGAGTAAGAGGGAGGGCTGAATG
GATTCGTGGACCGTGGGGAATTATCAGAGCTGGAGTGGAATTGAGCACCAAGACCTATGGGTGGGAGTTCCTGGCAGAACATCTGGTACGCTGCAACCACACACCAAGGGCCTGGCCAGCATGCTGGG
CAGATACCCAGAGGTGCTGGACATCACTGGACAGGTCCTTGTGAGGGAGTCTCTGAAGTTCTGCATTTATGTCCCTAAACTTGGAAGTAAGAATGCTTATATAGTCTAACCCTCACGTCCTCCTTTGA
ATTGAGAAAATCACAGGAAAAGAAGCCTTTGAAACAATGGGAAACTTACAGAGTTGTACTAACTAGAAAAGCCCCGATTTCCTCAAGACCGGTCACTCTAGCAAAGGGGGTGGGCTGAGGATGTGTCA
CCTGTGGCCTCACCAACCTCTTAGAAGTGAACCAATGACATTGGTTCCTGCAGTGCCAGGCACACGTGGAGGCCCCTCCTGCTGGGCCTGGGCTGCCTGGGGCACCAGGAGACCAGGGCAGGGAAGGG
CTCAGGCATTAAGTGCTGGTTACACTCTATGTACCCAGTAAAGTGGAGCAGTCACACCGTCTTGCTGGCTGAGCTGTGGGGATGAGCTTGGTGCCAGCAGCCTCTGCCTTCTAGGAGAGGGCTTTCTT
GGGAAACTCAAAGCCCTCGAACCATTGTTGTTCTAAATTAGTGTTTTCTTTAGCCCTCCCTAGCCCAATAGGGACCACCTCTTATTTGTCTCAAACTGGGGACTTGTGAATACTTCTGCAAGTTTTGC
AGCCTATTTTTGTATCCTTTCCATTTGGGGAGTGAAGCTATGAGTCTCAAAAGCCTTTGAGGAATTGCCAAGAATGGCAAGTGATTGCCTTCCTTCGGAGAACAGACACTTGGAATCTTTCCTTTAGT
TTTTATGTACATTCAGATTAATTTATATATCCACATATACAGTACAGATATTCATTTGCTACCTTACTTGTAAAGTGAACATCTGATGTGTACACTTGAGCTTCACAGCACGTGGATGTTGGGGAGCA
GCCTGTGTGCGGGCAGGGACTGCTGTACACTGGTGGCAGGGGTAACCCAGCATGAAGCCATCTCCAAGTGTCTGAGAAACCACTCTGTGCCTCAGCCCATGCCTGCCAGCCTCACCTCGAGTCTGTGT
GCACCAGCTGAATGTTAGTGTCTGCAGAGAGGGTTCTTGTGGTTATCTGCGTTGACATTCAATTTACAACCCAAACAGCAAAACAGAAAAAACTTGTCCATGGTGTTCAAGTTTGTGCAGGACCCTGC
ACCCCAGCCCCAGGCACCAGCTCACCTTTTGGGTGGAGTAGTTATGGTGAGGCCAGCCCTGGCATGTTTTTCTCACAGATATTGGCCCTTCCCATTAGCCAGGGCCACATGACAAACAGTAAGACTGA
CCAGATAGGAGCCCCGCAGACTGGAAAGACCCTGCTTCTTCCTGAGCTCATGGATGGGAGTGAGAAAGTGGGATTTGGACCTTCTACCTGAAACATTATGACACTGAGAAGTGGTCATGAAGCAGGTG
CTTTAAAGGGATATCATTATGGAACCCAGGGCTTTGGGTGCCAAGCACAGAGACCCATCCACATGTGCCCAGAGTCCATAATCACATTGACAATGGTGGTGAGGGGGGGTGGTCACCAGGCCAGCAGC
TTGTCACAAGACAGATCACTGGTACTGCACACTGCTGGAGGGTTAAATTCTCTGTGGTCCCTTTCAATAGAAGACTGGCTGTGGGCTGCTGAGTTAAGCAAGGTGAGTGGGTGGCTGTTCTTTCCTGA
AGAAAAGCTTATGTTACCAGAGGACAGATCCCCCCTCCTCTCTGCACCTGGGCTTGTCCGAGGCAGTGGATTGTCTTCCAGTGTTTCTCATTGCTGGTGTCTTATGCCTGTTTGGTTTATTGTGTTTT
TCACTTGAGGTTGTAAATTAAGTTCTACTAGGTGAAACCAGATCACAGTTCTGATAAAGGAAATTTGAATTTGAGAATATACTTTACATATTTTGATTACCTGTTTTAATTTTTGACCATAGAAGAGC
TTTTTGATTTGGGGAGGGGAAATATTTTCAGGTCTCTTGGGTTCCTGAAAAAGAAGGCCCTAGTTGTATGGCTCAGAGTGACTGAGAGCTCCTTTTTTTTGGCCGAGTGACAAGTGGCTGGTCAGGTG
GACCAAAGGACTTGGGTCCAAGACTCTGCACTCTGCTCTCTGGAAGCAGAAAAGGCAGAGTGTCGGTGGCCCCTTAAGGGCTTCCACTTGCACTCATGGGCTCGTCCTAAGTGGCCTTAGGAGGCCAT
CCCATCAGGAAGCTCTAGTGAGTTCTACAGGCTGCCATGTGGTTCTAGTGGGTTTTTATCCTGTCTTCCCTTCCTCTCCTTTCTGGTTCTGTCACATCTGTCCCCCAGCTGCCTTCCATGGAGGGTTG
GGGGTAGCCTCTCTGGTTGGACTTGGTCTTTTTTGCACATCCTTTCTCAGGATTTGCCTGCTTATACTGTTCCAGTCTTGGGCCCTTTTGCTTGTCATTTTCCTCACCTGCATGTGGACCAGGATTCT
TAGATTAGTCGCTTTGCAGTCCAGACATCACAGCCTATGTTTAAAGGCACTTGGCGGGAGAGAACCAGCCAGGAAGAAAATCTAAAAACAAGTCTAATCTAAAAATGAGTCTTGGAGCTTTTCCCCCA
CACCCATGTTCAGTTTACCCTGGGGGAAGTTCATTGGTCTGACCTTTGTAGGAGATGTGCTTCTTCTGTATTAAGTTTTAATTTTCATGCATCGCACTCATTTGCAAAGCACAGTTGTGTGCTGGAGG
AAAAAAGCCCTCTGGATGTGTGCAGGTCTTACTGCCAACTTGTCCTGACCAAAGCCAGCTAGTGGGGCCTGGAGCTCCTCTTCAACTTCTCCCACCTTGGCTTCTTTCTGTCTTCCCTGACAATGGAT
ATGGTTCCCAGGAGCACCTGGCCTCTGACGAGCTCAGTGCCTGTGGAGCTTCAGACTTTCTCTGAGCACAAGTCCCCTCTGCAGGGCTTCAACCCAACATGCCCACTGTGCTGTTTGCTCTGGCCCAT
TTAAATGTGCAGCCATGCAACCCGGGGCTGATGAGACTGTGGGGATGTCGTCAACAAAGTGACCATTTTGGTTTTGGCCAAATGACTGGATGGAAGTGGTAACCACAGTGCTGCCTGGCTTGTTACCC
AGCCCAGCCCCAAATCCCAATGGAACTGGCAGGCCTTGGATAGAATCTGTTCCTGCCAGAGTCCAGGCCACACTGGGAACTGGGGTGAAGCGGCAAACCCAAGTACTCTCAGCTGACCCAGCACCTGC
GTAAAATGAACCTGTACAGATGTGTGGCCCTAGAGAGGATGGGAGAGCCTGCTTTGGGGTCTTATGTCCTGGGCTCACTTGTCAACACTAGTCAGCCATCCTGTCCTGCCCATAAACCTGAACTTCTC
TTTAAAAGTGGACTTGGTCCTTCACTAACCTGCAGAAATGATAGGCGTTCCTTTTTAGCTAAAGGTCCAACAGGAGCTACCCACTCGTAACTAACTGCCCTGGAGTCTGGGAATGAGACCAGGCAGAC
CCTGGTTGCCACACCGATGAGGACAGGAGCCTGTACCTGTTTCCTTGGTCTTTGGGTCTACAGGACTGTGAGGATTTGTGGAGTTACTGATTATTGTTTGCCCTTCCTGAGGTTTTGGCAGGAACTGG
GCAGAGTGGAGAGAAGAGAGGGTAGCTCTTTTTGGGGGGCCTGTGTTCACCTGCCATTAGTGCCTCTTCCTTCTAGAGACTGGCTTGGGTGTGTGCATGCATACATGTGCACACACATGGGCAACTGC
ATGTGTTAATGAACAGCTTTTTTTGGTTCCCTTCCATGAAAATCAGGTGATTCTGAATTAATTTGATTGGAGTCAAAGGTGAAAAGTCTGGGATAGAGACTGCAAGTGCTCAGTCCTTCCCAAGCACC
AAGCTCCAGAGCAGAAACATGGTTAAGAGGGCCACATGGTACTATCAACCCTGTACTTTGTGTTTAAAGAGATATCTTCTCATTCACCCGTGGTTCTTGCCCATACATTCTTGCAGTGAGATTGTTGG
CTGGAGAGCAAGCTAGCACCCACTCACAAGCAGGGTTCCACCATGACAACTGGGTTGCTCCTTGGGAAACTGGGTGAGGGCCAGGGGAGCAATGATCACACTGGGGTAGTGAGTTCCTGCCAACTCCT
GAGCAGCTGCTTTCTTAGCTGTGGCAGAAGGGTCAGACTGTGCCACAATTGTTGTTAAAAACAAAATATGCCAACCTTCCCCTCTGCCCTGCTGGCTGTTGTCCATTCAGTCTTATTGATGCAGTCTT
TGGGGGTTGCCAAAGGCCTGCAGATTCCTTTCTCACTAAGTCCTGACTCCTAGTCCTCTAGCACCCACTTATGTTCTGGTCTTCAGTGCAAACCCCTTTGTTCTCTGTGGGCCAGACTACTGAGAAGT
GAACCTGGGGAGTGACATGAGCAATTTGCCTCTGGAGTGCTTCCTGTCTCCTGGGGACAACTGCAGAAGTGATCATCCGAGTACTGAGTGAAGGGCTACTGTCCTATTTGTCCAGAGGCAAACTTTTT
GAGGGTCCCACCTCCTATTGTGACCAAGCATGAAACCAAACTAAGAAAAAGGCATGCTCTGTCATTTGAGTCTGAGTGGAAGGGGAATTCTTTACTCTGCATAAATCTTTTGACAAAGATGGAGCTTA
CCTTTGGTGTGGACTGTCGTGGTGCTGAGGCGGGAGGCATGGGATTGCCCTCTTTGGGCTGGGTCTCCAGGCCTCACAAGGTCCCCTGTGGGGATGCTGCTATTTCTAAGATGCAAATTGCACATTTC
CTAGATTTTGTATCTGTGGACTTGGATAAGGGAGGGGAACAGGGACAAACTACTTGTACAGTTTGAGATGGGCCTCAATGGTACTTCAAACCTTTTGATCGTTCCTAAATAAAAATGTACATATATTT
TG

hide sequence

RefSeq Acc Id:

XM_040274835 ⟹ XP_040130769

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	178,158,906 - 178,285,053 (-)	NCBI

RefSeq Acc Id:

XM_040274836 ⟹ XP_040130770

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	178,158,906 - 178,271,485 (-)	NCBI

RefSeq Acc Id:

XM_040274837 ⟹ XP_040130771

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	178,158,906 - 178,284,765 (-)	NCBI

RefSeq Acc Id:

XM_040274838 ⟹ XP_040130772

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	178,158,906 - 178,285,053 (-)	NCBI


Protein RefSeqs	XP_021585167	(Get FASTA)	NCBI Sequence Viewer
	XP_040130769	(Get FASTA)	NCBI Sequence Viewer
	XP_040130770	(Get FASTA)	NCBI Sequence Viewer
	XP_040130771	(Get FASTA)	NCBI Sequence Viewer
	XP_040130772	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000021696.2
	ENSSTOP00000031533.1
GenBank Protein	KAG3263282	(Get FASTA)	NCBI Sequence Viewer
	KAG3263283	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021585167 ⟸ XM_021729492
- Peptide Label:	isoform X2
- UniProtKB:	I3NBE9 (UniProtKB/TrEMBL), A0A287DDB0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASKRKSTTPCMIPVKTVVLQDAIVEAQPAEALPEVPQQDLPLEAPATSSEAAQNSSSTDGSSLANGHRNTLDGYLYSCKDCDFRSQDMTQFVGHMNSEHTDFNKDPTFICPGCSFLAKTPEGLSLHN AKCHSGEANFVWNVAKPDNHVVVEQSIPESTSTPDPAGDPGAEGTDGQAEIIITKTPIMKIMKGKAEAKKIHTLKENVPSQPVGEALPKPSAGEAEVKEGDHTFVNGAAPVSQAPASSAKPPHTTNGP LIGTVPVLPAGIAQFLSLQQQAPVHTQHHSHQPLPTSKALPKVMIPLSSIPTYNAAMDSNSFLKNSFHKFPYPTKAELCYLTVVTKYPEEQLKIWFTAQRLKQGISWSPEEIEDARKKMFNTVIQSVP QPTITVLNTPLVASAGNVQHLIQAALPGHVVGQPEGTAGGLLVSQPLMANGLQAPTSSLPLAVTSVPKQPTVAPINTVCSNTTSAVKVVNAAQSLLTACPSITSQAFLDASIYKNKKSHEQLSALKGS FCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRGMMPGDHGSILIDSVPEVPFSPSSKAPEVTCIPTATSLASHPAAKRQSWHQTPDFTPTKYKERAPEQLRALESSFAQNPLPLDE ELDRLRSETKMTRREIDSWFSEKRKKVNAEETKKADGTACQEEGEAAEDEAGEAELASELRVAGENGSPEMPISQISAERKVSPIKINLKNLRVTEASGKSELPGLLACELEEDSLNKLAEQPPGKVS YKKTAQQRHLLRQLFVQTQWPSNQDYDSIMAQTGLPRPEVVRWFGDSRYALKNGQLKWYEDYKRGNFPPGLLVITPGNRELLQDYYMTHKMLYEEDLQNLCDKTQMSSQQVKQWFAEKMGEETRAVAD TGGEDQGPGTGEPAATHKGLGDSYSEVSENSESWEPSAPEASSEPFGTSSPQAGLQLETD hide sequence

RefSeq Acc Id:	XP_040130769 ⟸ XM_040274835
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DDB0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040130772 ⟸ XM_040274838
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DDB0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040130771 ⟸ XM_040274837
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DDB0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040130770 ⟸ XM_040274836
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DDB0 (UniProtKB/TrEMBL)

Protein Domains

Homeobox

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011674	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011674.3	UniProtKB/TrEMBL
	ENSSTOT00000034682.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homez_homeobox_dom	UniProtKB/TrEMBL
	ZHX_Znf_C2H2	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Zhx3	ENTREZGENE
PANTHER	ZINC FINGERS AND HOMEOBOXES PROTEIN 3	UniProtKB/TrEMBL
	ZINC-FINGERS AND HOMEOBOXES RELATED	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	Homez	UniProtKB/TrEMBL
	zf_C2H2_ZHX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287DDB0	ENTREZGENE, UniProtKB/TrEMBL
	I3NBE9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar