Zhx3 (zinc fingers and homeoboxes 3) - Rat Genome Database

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Gene: Zhx3 (zinc fingers and homeoboxes 3) Rattus norvegicus
Analyze
Symbol: Zhx3
Name: zinc fingers and homeoboxes 3
RGD ID: 631431
Description: Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Is active in nucleus. Orthologous to human ZHX3 (zinc fingers and homeoboxes 3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102551402; Tix1; triple homeobox 1; uncharacterized LOC102551402; zinc finger and homeodomain protein 3; zinc fingers and homeoboxes protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23149,417,843 - 149,548,671 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3149,417,818 - 149,527,079 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3153,230,920 - 153,328,717 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03161,730,305 - 161,828,105 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03159,469,934 - 159,567,975 (-)NCBIRnor_WKY
Rnor_6.03156,759,820 - 156,868,173 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3156,764,751 - 156,777,999 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03162,989,355 - 163,095,228 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,560,440 - 151,574,257 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13151,478,388 - 151,479,956 (-)NCBI
Celera3148,096,662 - 148,110,463 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ZHX proteins regulate podocyte gene expression during the development of nephrotic syndrome. Liu G, etal., J Biol Chem. 2006 Dec 22;281(51):39681-92. Epub 2006 Oct 20.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Analysis of zinc-fingers and homeoboxes (ZHX)-1-interacting proteins: molecular cloning and characterization of a member of the ZHX family, ZHX3. Yamada K, etal., Biochem J 2003 Jul 1;373(Pt 1):167-78.
Additional References at PubMed
PMID:21174497  


Genomics

Comparative Map Data
Zhx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23149,417,843 - 149,548,671 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3149,417,818 - 149,527,079 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3153,230,920 - 153,328,717 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03161,730,305 - 161,828,105 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03159,469,934 - 159,567,975 (-)NCBIRnor_WKY
Rnor_6.03156,759,820 - 156,868,173 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3156,764,751 - 156,777,999 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03162,989,355 - 163,095,228 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43151,560,440 - 151,574,257 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13151,478,388 - 151,479,956 (-)NCBI
Celera3148,096,662 - 148,110,463 (-)NCBICelera
Cytogenetic Map3q42NCBI
ZHX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382041,178,455 - 41,317,731 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2041,178,448 - 41,317,731 (-)EnsemblGRCh38hg38GRCh38
GRCh372039,807,095 - 39,946,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362039,240,503 - 39,362,153 (-)NCBINCBI36Build 36hg18NCBI36
Build 342039,240,502 - 39,362,153NCBI
Celera2036,517,656 - 36,639,406 (-)NCBICelera
Cytogenetic Map20q12NCBI
HuRef2036,545,141 - 36,666,992 (-)NCBIHuRef
CHM1_12039,711,487 - 39,833,056 (-)NCBICHM1_1
T2T-CHM13v2.02042,910,141 - 43,049,531 (-)NCBIT2T-CHM13v2.0
Zhx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392160,612,367 - 160,714,910 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2160,590,628 - 160,714,918 (-)EnsemblGRCm39 Ensembl
GRCm382160,770,447 - 160,872,990 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2160,748,708 - 160,872,998 (-)EnsemblGRCm38mm10GRCm38
MGSCv372160,596,183 - 160,698,726 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362160,461,888 - 160,564,431 (-)NCBIMGSCv36mm8
Celera2166,702,506 - 166,803,659 (-)NCBICelera
Cytogenetic Map2H2NCBI
Zhx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544515,632,995 - 15,785,238 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544515,632,723 - 15,785,238 (+)NCBIChiLan1.0ChiLan1.0
ZHX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12038,617,878 - 38,738,631 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2038,621,651 - 38,755,797 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02037,518,569 - 37,659,417 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZHX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12429,217,434 - 29,343,475 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2429,223,236 - 29,282,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2428,862,936 - 28,988,759 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02429,923,064 - 30,048,336 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2429,923,070 - 30,048,272 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12429,191,952 - 29,317,181 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02429,295,800 - 29,420,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02429,792,021 - 29,917,169 (-)NCBIUU_Cfam_GSD_1.0
Zhx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640178,152,880 - 178,285,053 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936561464,443 - 596,604 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZHX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1743,848,352 - 43,962,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11743,848,345 - 43,963,084 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21749,248,058 - 49,252,810 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZHX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,455,121 - 22,508,182 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,456,123 - 22,590,134 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl222,456,123 - 22,590,134 (+)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605071,273,983 - 71,414,095 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zhx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249191,808,819 - 1,971,778 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249191,802,708 - 1,972,676 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH137720  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23149,422,919 - 149,423,050 (+)MAPPERmRatBN7.2
Rnor_6.03156,764,897 - 156,765,027NCBIRnor6.0
Rnor_5.03162,994,432 - 162,994,562UniSTSRnor5.0
RGSC_v3.43151,560,588 - 151,560,718UniSTSRGSC3.4
Celera3148,096,810 - 148,096,940UniSTS
RH 3.4 Map31368.1UniSTS
Cytogenetic Map3q42UniSTS
RH137781  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23149,425,956 - 149,426,200 (+)MAPPERmRatBN7.2
Rnor_6.03156,767,934 - 156,768,177NCBIRnor6.0
Rnor_5.03162,997,469 - 162,997,712UniSTSRnor5.0
RGSC_v3.43151,563,625 - 151,563,868UniSTSRGSC3.4
Celera3148,099,847 - 148,100,090UniSTS
RH 3.4 Map31365.3UniSTS
Cytogenetic Map3q42UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:269
Count of miRNA genes:168
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000032588
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 29 14 16 14 6 6 64 29 28 11 6
Low 3 41 28 27 3 27 2 5 10 6 13 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001047097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB081947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ017884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000032588   ⟹   ENSRNOP00000034076
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3149,422,774 - 149,527,079 (-)Ensembl
Rnor_6.0 Ensembl3156,764,751 - 156,777,999 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091208   ⟹   ENSRNOP00000073211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3149,433,557 - 149,515,818 (-)Ensembl
Rnor_6.0 Ensembl3156,774,313 - 156,777,999 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106250   ⟹   ENSRNOP00000080375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3149,417,818 - 149,526,884 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117675   ⟹   ENSRNOP00000083498
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3149,433,530 - 149,526,449 (-)Ensembl
RefSeq Acc Id: NM_001047097   ⟹   NP_001040562
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,422,772 - 149,436,589 (-)NCBI
Rnor_6.03156,764,749 - 156,777,999 (-)NCBI
Rnor_5.03162,989,355 - 163,095,228 (-)NCBI
RGSC_v3.43151,560,440 - 151,574,257 (-)RGD
Celera3148,096,662 - 148,110,463 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235474   ⟹   XP_006235536
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,521,466 (-)NCBI
Rnor_6.03156,774,968 - 156,860,317 (-)NCBI
Rnor_5.03162,989,355 - 163,095,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235475   ⟹   XP_006235537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,527,075 (-)NCBI
Rnor_6.03156,774,968 - 156,868,173 (-)NCBI
Rnor_5.03162,989,355 - 163,095,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235476   ⟹   XP_006235538
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,526,793 (-)NCBI
Rnor_6.03156,774,968 - 156,867,921 (-)NCBI
Rnor_5.03162,989,355 - 163,095,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235477   ⟹   XP_006235539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,482,382 (-)NCBI
Rnor_6.03156,774,968 - 156,823,465 (-)NCBI
Rnor_5.03162,989,355 - 163,095,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235480   ⟹   XP_006235542
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,527,075 (-)NCBI
Rnor_6.03156,774,968 - 156,868,173 (-)NCBI
Rnor_5.03162,989,355 - 163,095,228 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008762344   ⟹   XP_008760566
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,417,843 - 149,527,071 (-)NCBI
Rnor_6.03156,759,820 - 156,868,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591788   ⟹   XP_017447277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,472,755 (-)NCBI
Rnor_6.03156,774,968 - 156,810,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105096   ⟹   XP_038961024
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,548,671 (-)NCBI
RefSeq Acc Id: XM_039105097   ⟹   XP_038961025
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,504,826 (-)NCBI
RefSeq Acc Id: XM_039105098   ⟹   XP_038961026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,527,075 (-)NCBI
RefSeq Acc Id: XM_039105099   ⟹   XP_038961027
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,521,466 (-)NCBI
RefSeq Acc Id: XM_039105100   ⟹   XP_038961028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,482,382 (-)NCBI
RefSeq Acc Id: XM_039105101   ⟹   XP_038961029
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,472,755 (-)NCBI
RefSeq Acc Id: XM_039105102   ⟹   XP_038961030
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,428,969 - 149,472,755 (-)NCBI
RefSeq Acc Id: XR_005501893
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23149,417,843 - 149,527,071 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001040562   ⟸   NM_001047097
- UniProtKB: Q1I1B1 (UniProtKB/Swiss-Prot),   Q80Z36 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235542   ⟸   XM_006235480
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006235537   ⟸   XM_006235475
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006235538   ⟸   XM_006235476
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006235536   ⟸   XM_006235474
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006235539   ⟸   XM_006235477
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008760566   ⟸   XM_008762344
- Peptide Label: isoform X2
- UniProtKB: Q1I1B1 (UniProtKB/Swiss-Prot),   Q80Z36 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017447277   ⟸   XM_017591788
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000034076   ⟸   ENSRNOT00000032588
RefSeq Acc Id: ENSRNOP00000073211   ⟸   ENSRNOT00000091208
RefSeq Acc Id: XP_038961024   ⟸   XM_039105096
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961026   ⟸   XM_039105098
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961027   ⟸   XM_039105099
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961025   ⟸   XM_039105097
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961028   ⟸   XM_039105100
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961030   ⟸   XM_039105102
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961029   ⟸   XM_039105101
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000083498   ⟸   ENSRNOT00000117675
RefSeq Acc Id: ENSRNOP00000080375   ⟸   ENSRNOT00000106250
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80Z36-F1-model_v2 AlphaFold Q80Z36 1-951 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631431 AgrOrtholog
BioCyc Gene G2FUF-46965 BioCyc
Ensembl Genes ENSRNOG00000027988 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000034076 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000073211 ENTREZGENE
  ENSRNOP00000073211.2 UniProtKB/TrEMBL
  ENSRNOP00000080375 ENTREZGENE
  ENSRNOP00000080375.1 UniProtKB/TrEMBL
  ENSRNOP00000083498 ENTREZGENE
  ENSRNOP00000083498.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032588 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000091208 ENTREZGENE
  ENSRNOT00000091208.2 UniProtKB/TrEMBL
  ENSRNOT00000106250 ENTREZGENE
  ENSRNOT00000106250.1 UniProtKB/TrEMBL
  ENSRNOT00000117675 ENTREZGENE
  ENSRNOT00000117675.1 UniProtKB/TrEMBL
InterPro Homeobox UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot
  Homez_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZHX_Znf_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:311604 UniProtKB/Swiss-Prot
NCBI Gene 311604 ENTREZGENE
Pfam Homeobox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homez UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf_C2H2_ZHX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zhx3 PhenoGen
PROSITE HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K4X5_RAT UniProtKB/TrEMBL
  Q1I1B1 ENTREZGENE
  Q80Z36 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q1I1B1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zhx3  zinc fingers and homeoboxes 3  LOC102551402  uncharacterized LOC102551402  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102551402  uncharacterized LOC102551402      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Zhx3  zinc fingers and homeoboxes 3  Tix1  triple homeobox 1  Symbol and Name updated 1299863 APPROVED
2004-02-11 Tix1  triple homeobox 1      Symbol and Name status set to approved 625702 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized in nuclei 634246
gene_function transcriptional repressor that functions as a dimer 634246