Rpl28 (ribosomal protein L28) - Rat Genome Database

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Gene: Rpl28 (ribosomal protein L28) Ictidomys tridecemlineatus
Analyze
Symbol: Rpl28
Name: ribosomal protein L28
RGD ID: 12690018
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH middle cerebral artery infarction (ortholog); Weight Gain (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L28
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,923,338 - 1,925,978 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886633,050 - 637,193 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936886633,303 - 635,888 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rpl28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,923,338 - 1,925,978 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886633,050 - 637,193 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936886633,303 - 635,888 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,385,932 - 55,403,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,385,932 - 55,403,250 (+)EnsemblGRCh38hg38GRCh38
GRCh371955,897,300 - 55,914,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,589,112 - 60,595,265 (+)NCBINCBI36Build 36hg18NCBI36
Build 341960,589,111 - 60,595,261NCBI
Celera1952,938,123 - 52,944,274 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,219,035 - 52,225,186 (+)NCBIHuRef
CHM1_11955,890,859 - 55,897,010 (+)NCBICHM1_1
T2T-CHM13v2.01958,481,406 - 58,498,795 (+)NCBIT2T-CHM13v2.0
Rpl28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,795,964 - 4,797,546 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,795,873 - 4,798,065 (+)EnsemblGRCm39 Ensembl
GRCm3874,792,965 - 4,794,547 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,792,874 - 4,795,066 (+)EnsemblGRCm38mm10GRCm38
MGSCv3774,744,567 - 4,746,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,396,038 - 4,409,032 (+)NCBIMGSCv36mm8
Celera74,522,721 - 4,524,303 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.77NCBI
Rpl28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,080,945 - 78,083,532 (-)NCBIGRCr8
mRatBN7.2169,052,148 - 69,054,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,053,203 - 69,055,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,397,187 - 74,399,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,961,498 - 82,964,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,110,331 - 76,112,918 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,619,282 - 72,621,941 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,619,282 - 72,621,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,912,839 - 75,915,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,768,597 - 67,771,158 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1167,846,707 - 67,849,269 (-)NCBI
Celera168,070,140 - 68,072,375 (+)NCBICelera
Cytogenetic Map1q12NCBI
Rpl28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955567860,078 - 862,853 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955567860,351 - 862,853 (-)NCBIChiLan1.0ChiLan1.0
RPL28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,524,324 - 61,526,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,253,344 - 63,255,882 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,428,999 - 52,431,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,116,514 - 61,120,500 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,116,514 - 61,135,785 (+)Ensemblpanpan1.1panPan2
RPL28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,301,856 - 102,304,949 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,251,729 - 102,304,831 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,358,564 - 102,361,568 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01102,955,068 - 102,958,072 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,955,020 - 102,958,034 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,592,345 - 102,595,346 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,304,609 - 102,307,609 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,067,606 - 103,070,610 (-)NCBIUU_Cfam_GSD_1.0
RPL28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,556,687 - 59,562,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,556,586 - 59,559,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,987,167 - 47,989,673 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,987,663 - 47,993,276 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045633,374 - 635,905 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,919,657 - 1,925,035 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248321,922,802 - 1,925,116 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000007996   ⟹   ENSSTOP00000007157
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936886633,050 - 637,193 (+)Ensembl
RefSeq Acc Id: XM_005341576   ⟹   XP_005341633
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093491,923,338 - 1,925,978 (-)NCBI
SpeTri2.0NW_004936886633,303 - 635,888 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341633 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007157.2
GenBank Protein KAG3255622 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341633   ⟸   XM_005341576
- UniProtKB: I3MAT9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000007157   ⟸   ENSSTOT00000007996
Protein Domains
Ribosomal eL28/Mak16


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008006 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007996.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.390.110 UniProtKB/TrEMBL
InterPro L28e/Mak16 UniProtKB/TrEMBL
  Ribosomal_L28e UniProtKB/TrEMBL
NCBI Gene Rpl28 ENTREZGENE
PANTHER PTHR10544 UniProtKB/TrEMBL
Pfam Ribosomal_L28e UniProtKB/TrEMBL
UniProt I3MAT9 ENTREZGENE, UniProtKB/TrEMBL