Cds1 (CDP-diacylglycerol synthase 1) - Rat Genome Database

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Gene: Cds1 (CDP-diacylglycerol synthase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Cds1
Name: CDP-diacylglycerol synthase 1
RGD ID: 12683304
Description: ENCODES a protein that exhibits phosphatidate cytidylyltransferase activity (ortholog); INVOLVED IN CDP-diacylglycerol biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CDP-diacylglycerol synthase 1, transcript variant X1; CDP-diacylglycerol synthase 1, transcript variant X2; phosphatidate cytidylyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052853,998,516 - 4,065,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936738160,338 - 227,775 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936738160,346 - 227,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cds1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052853,998,516 - 4,065,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936738160,338 - 227,775 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936738160,346 - 227,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38484,583,127 - 84,651,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl484,583,127 - 84,651,334 (+)EnsemblGRCh38hg38GRCh38
GRCh37485,504,280 - 85,572,487 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36485,723,081 - 85,789,379 (+)NCBINCBI36Build 36hg18NCBI36
Build 34485,861,235 - 85,927,518NCBI
Celera482,794,273 - 82,862,979 (+)NCBICelera
Cytogenetic Map4q21.23NCBI
HuRef481,245,783 - 81,314,483 (+)NCBIHuRef
CHM1_1485,481,027 - 85,549,447 (+)NCBICHM1_1
T2T-CHM13v2.0487,913,124 - 87,981,319 (+)NCBIT2T-CHM13v2.0
Cds1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395101,913,001 - 101,971,724 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5101,912,996 - 101,971,724 (+)EnsemblGRCm39 Ensembl
GRCm385101,765,093 - 101,823,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5101,765,130 - 101,823,858 (+)EnsemblGRCm38mm10GRCm38
MGSCv375102,194,149 - 102,252,871 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365102,005,432 - 102,064,154 (+)NCBIMGSCv36mm8
Celera599,089,034 - 99,148,175 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map548.93NCBI
Cds1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8148,126,678 - 8,187,243 (-)NCBIGRCr8
mRatBN7.2147,820,328 - 7,882,943 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,820,351 - 7,882,681 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,788,202 - 7,848,854 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0149,088,435 - 9,149,086 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,784,572 - 7,845,223 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0149,396,511 - 9,456,964 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl149,396,512 - 9,456,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0149,358,067 - 9,418,520 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4149,074,826 - 9,135,391 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1149,072,988 - 9,135,335 (-)NCBI
Celera147,941,818 - 8,002,370 (-)NCBICelera
Cytogenetic Map14p22NCBI
Cds1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554745,057,833 - 5,104,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554745,057,833 - 5,104,235 (-)NCBIChiLan1.0ChiLan1.0
CDS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2345,377,695 - 45,465,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1445,583,939 - 45,652,498 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0439,530,229 - 39,598,543 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1445,379,856 - 45,448,170 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl445,379,856 - 45,448,170 (-)Ensemblpanpan1.1panPan2
CDS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,349,033 - 8,416,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl328,349,027 - 8,415,295 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3233,471,474 - 33,538,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,368,977 - 8,436,435 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl328,368,291 - 8,434,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1328,450,173 - 8,517,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0328,310,109 - 8,377,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03231,580,775 - 31,648,217 (-)NCBIUU_Cfam_GSD_1.0
CDS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8133,959,247 - 134,041,258 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18133,959,250 - 134,041,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28143,439,806 - 143,520,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1732,947,644 - 33,014,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl732,948,053 - 33,014,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603711,575,377 - 11,648,722 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cds1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249001,701,522 - 1,766,768 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249001,701,507 - 1,765,791 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009748   ⟹   ENSSTOP00000008744
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936738160,338 - 227,775 (-)Ensembl
RefSeq Acc Id: XM_005339303   ⟹   XP_005339360
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244052853,998,516 - 4,065,870 (-)NCBI
SpeTri2.0NW_004936738160,346 - 227,618 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735940   ⟹   XP_021591615
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244052853,998,516 - 4,065,871 (-)NCBI
SpeTri2.0NW_004936738160,346 - 227,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040292201   ⟹   XP_040148135
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244052853,998,516 - 4,065,872 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005339360 (Get FASTA)   NCBI Sequence Viewer  
  XP_021591615 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008744.3
GenBank Protein KAG3276323 (Get FASTA)   NCBI Sequence Viewer  
  KAG3276324 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339360   ⟸   XM_005339303
- Peptide Label: isoform X1
- UniProtKB: I3ME51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591615   ⟸   XM_021735940
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040148135   ⟸   XM_040292201
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000008744   ⟸   ENSSTOT00000009748


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009750 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009748.3 UniProtKB/TrEMBL
InterPro PC_trans UniProtKB/TrEMBL
  PC_Trfase_euk UniProtKB/TrEMBL
NCBI Gene Cds1 ENTREZGENE
PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR13773 UniProtKB/TrEMBL
Pfam CTP_transf_1 UniProtKB/TrEMBL
PIRSF PC_trans_euk UniProtKB/TrEMBL
PROSITE CDS UniProtKB/TrEMBL
UniProt I3ME51 ENTREZGENE, UniProtKB/TrEMBL