CDS1 (CDP-diacylglycerol synthase 1) - Rat Genome Database

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Gene: CDS1 (CDP-diacylglycerol synthase 1) Chlorocebus sabaeus
Analyze
Symbol: CDS1
Name: CDP-diacylglycerol synthase 1
RGD ID: 18650326
Description: ENCODES a protein that exhibits phosphatidate cytidylyltransferase activity (ortholog); INVOLVED IN CDP-diacylglycerol biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidate cytidylyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1732,947,644 - 33,014,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl732,948,053 - 33,014,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603711,575,377 - 11,648,722 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CDS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1732,947,644 - 33,014,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl732,948,053 - 33,014,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603711,575,377 - 11,648,722 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38484,583,127 - 84,651,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl484,583,127 - 84,651,334 (+)EnsemblGRCh38hg38GRCh38
GRCh37485,504,280 - 85,572,487 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36485,723,081 - 85,789,379 (+)NCBINCBI36Build 36hg18NCBI36
Build 34485,861,235 - 85,927,518NCBI
Celera482,794,273 - 82,862,979 (+)NCBICelera
Cytogenetic Map4q21.23NCBI
HuRef481,245,783 - 81,314,483 (+)NCBIHuRef
CHM1_1485,481,027 - 85,549,447 (+)NCBICHM1_1
T2T-CHM13v2.0487,913,124 - 87,981,319 (+)NCBIT2T-CHM13v2.0
Cds1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395101,913,001 - 101,971,724 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5101,912,996 - 101,971,724 (+)EnsemblGRCm39 Ensembl
GRCm385101,765,093 - 101,823,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5101,765,130 - 101,823,858 (+)EnsemblGRCm38mm10GRCm38
MGSCv375102,194,149 - 102,252,871 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365102,005,432 - 102,064,154 (+)NCBIMGSCv36mm8
Celera599,089,034 - 99,148,175 (+)NCBICelera
Cytogenetic Map5E5NCBI
cM Map548.93NCBI
Cds1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8148,126,678 - 8,187,243 (-)NCBIGRCr8
mRatBN7.2147,820,328 - 7,882,943 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,820,351 - 7,882,681 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,788,202 - 7,848,854 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0149,088,435 - 9,149,086 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,784,572 - 7,845,223 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0149,396,511 - 9,456,964 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl149,396,512 - 9,456,990 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0149,358,067 - 9,418,520 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4149,074,826 - 9,135,391 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1149,072,988 - 9,135,335 (-)NCBI
Celera147,941,818 - 8,002,370 (-)NCBICelera
Cytogenetic Map14p22NCBI
Cds1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554745,057,833 - 5,104,235 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554745,057,833 - 5,104,235 (-)NCBIChiLan1.0ChiLan1.0
CDS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2345,377,695 - 45,465,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1445,583,939 - 45,652,498 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0439,530,229 - 39,598,543 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1445,379,856 - 45,448,170 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl445,379,856 - 45,448,170 (-)Ensemblpanpan1.1panPan2
CDS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1328,349,033 - 8,416,451 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl328,349,027 - 8,415,295 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3233,471,474 - 33,538,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0328,368,977 - 8,436,435 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl328,368,291 - 8,434,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1328,450,173 - 8,517,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0328,310,109 - 8,377,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03231,580,775 - 31,648,217 (-)NCBIUU_Cfam_GSD_1.0
Cds1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052853,998,516 - 4,065,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936738160,338 - 227,775 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936738160,346 - 227,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8133,959,247 - 134,041,258 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18133,959,250 - 134,041,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28143,439,806 - 143,520,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cds1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249001,701,522 - 1,766,768 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249001,701,507 - 1,765,791 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDS1
1399 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007999118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000002398   ⟹   ENSCSAP00000000712
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl732,948,053 - 33,014,944 (+)Ensembl
RefSeq Acc Id: XM_007999118   ⟹   XP_007997309
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1732,947,644 - 33,014,807 (+)NCBI
Vero_WHO_p1.0NW_02366603711,575,377 - 11,648,722 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007997309 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000712
  ENSCSAP00000000712.1
RefSeq Acc Id: XP_007997309   ⟸   XM_007999118
- UniProtKB: A0A0D9QWH3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000000712   ⟸   ENSCSAT00000002398


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004368 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002398.1 UniProtKB/TrEMBL
InterPro PC_trans UniProtKB/TrEMBL
  PC_Trfase_euk UniProtKB/TrEMBL
KEGG Report csab:103235910 UniProtKB/TrEMBL
NCBI Gene CDS1 ENTREZGENE
PANTHER PHOSPHATIDATE CYTIDYLYLTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR13773 UniProtKB/TrEMBL
Pfam CTP_transf_1 UniProtKB/TrEMBL
PIRSF PC_trans_euk UniProtKB/TrEMBL
PROSITE CDS UniProtKB/TrEMBL
UniProt A0A0D9QWH3 ENTREZGENE, UniProtKB/TrEMBL