Thoc3 (THO complex 3) - Rat Genome Database

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Gene: Thoc3 (THO complex 3) Ictidomys tridecemlineatus
Analyze
Symbol: Thoc3
Name: THO complex 3
RGD ID: 12679047
Description: INVOLVED IN mRNA export from nucleus (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Sotos syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); THO complex part of transcription export complex (ortholog); transcription export complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: THO complex 3, transcript variant X1; THO complex 3, transcript variant X2; THO complex subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,399,735 - 121,411,954 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936597433,865 - 436,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Thoc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213121,399,735 - 121,411,954 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936597433,865 - 436,852 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THOC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385175,959,531 - 175,968,315 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5175,917,873 - 176,034,680 (-)EnsemblGRCh38hg38GRCh38
GRCh375175,386,534 - 175,395,318 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365175,319,140 - 175,328,151 (-)NCBINCBI36Build 36hg18NCBI36
Build 345177,235,132 - 177,243,873NCBI
Celera5122,313,128 - 122,314,601 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5172,063,942 - 172,065,852 (+)NCBIHuRef
CHM1_15174,819,332 - 174,828,116 (-)NCBICHM1_1
T2T-CHM13v2.05176,503,198 - 176,512,029 (-)NCBIT2T-CHM13v2.0
Thoc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391354,606,650 - 54,616,653 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1354,606,650 - 54,616,662 (-)EnsemblGRCm39 Ensembl
GRCm381354,458,837 - 54,468,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1354,458,837 - 54,468,849 (-)EnsemblGRCm38mm10GRCm38
MGSCv371354,560,198 - 54,570,201 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361354,469,140 - 54,478,441 (-)NCBIMGSCv36mm8
Celera1355,524,317 - 55,534,319 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1328.69NCBI
Thoc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81710,148,281 - 10,157,472 (+)NCBIGRCr8
mRatBN7.21710,143,184 - 10,152,375 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1710,143,139 - 10,152,370 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1710,157,081 - 10,166,261 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01711,690,656 - 11,699,832 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01710,153,524 - 10,162,704 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01710,676,943 - 10,686,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1710,676,943 - 10,686,134 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01712,803,773 - 12,812,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41716,233,851 - 16,243,042 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11716,217,971 - 16,242,379 (+)NCBI
Celera1710,215,590 - 10,224,767 (+)NCBICelera
Cytogenetic Map17p14NCBI
Thoc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540828,467,540 - 28,480,613 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540828,467,540 - 28,480,613 (-)NCBIChiLan1.0ChiLan1.0
THOC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24171,048,030 - 171,101,061 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15169,187,568 - 169,240,599 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05171,310,321 - 171,319,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15178,205,744 - 178,214,684 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5178,205,744 - 178,214,684 (-)Ensemblpanpan1.1panPan2
THOC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1437,130,944 - 37,151,479 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl437,057,940 - 37,199,448 (+)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl437,057,940 - 37,199,448 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0437,497,845 - 37,518,160 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,425,038 - 37,666,348 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,323,077 - 37,343,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,511,047 - 37,531,365 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0438,020,440 - 38,040,769 (+)NCBIUU_Cfam_GSD_1.0
THOC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl281,658,788 - 81,670,127 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1281,658,736 - 81,670,996 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,306,568 - 83,318,259 (+)NCBISscrofa10.2Sscrofa10.2susScr3
THOC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12378,106,835 - 78,115,342 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2378,106,635 - 78,115,269 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666034473,479 - 482,230 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Thoc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473314,005,501 - 14,023,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473314,005,563 - 14,022,516 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021731560   ⟹   XP_021587235
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213121,399,735 - 121,411,954 (-)NCBI
SpeTri2.0NW_004936597433,865 - 436,852 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021587235 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3265715 (Get FASTA)   NCBI Sequence Viewer  
  KAG3265716 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021587235   ⟸   XM_021731560
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Thoc3 ENTREZGENE