Tmem218 (transmembrane protein 218) - Rat Genome Database

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Gene: Tmem218 (transmembrane protein 218) Ictidomys tridecemlineatus
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Symbol: Tmem218
Name: transmembrane protein 218
RGD ID: 12670682
Description: ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN cell projection (inferred); cilium (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947107,270,364 - 107,287,819 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,517,113 - 1,535,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367431,519,531 - 1,535,302 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem218Squirrelchromosome 11 partial duplication syndrome  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Distal trisomy 11qClinVarPMID:25741868
Tmem218SquirrelDwarfism  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Short statureClinVarPMID:32581362
Tmem218Squirrelholoprosencephaly 11  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Holoprosencephaly 11ClinVarPMID:28492532
Tmem218SquirrelJacobsen Syndrome  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Paris-Trousseau thrombocytopeniaClinVarPMID:32581362
Tmem218SquirrelJoubert syndrome  ISOTMEM218 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:33791682
Tmem218SquirrelJoubert syndrome 1  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:25741868 and PMID:33791682
Tmem218SquirrelJoubert Syndrome 39  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Joubert syndrome 39ClinVarPMID:25741868 more ...
Tmem218SquirrelMeckel syndrome 4  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: Meckel syndrome and type 4ClinVarPMID:25741868 and PMID:33791682
Tmem218Squirrelschizophrenia  ISOTMEM218 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem218SquirrelSenior-Loken syndrome  ISOTmem218 (Mus musculus)9068941OMIM:266900 more ...MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem218SquirrelJoubert Syndrome 39  ISOTMEM218 (Homo sapiens)7240710 OMIM 


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Tmem218Squirrelcell projection located_inIEAUniProtKB-KW:KW-0966150520179 UniProtGO_REF:0000043
Tmem218Squirrelcilium located_inIEAUniProtKB-SubCell:SL-0066150520179 UniProtGO_REF:0000044
Tmem218Squirrelmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
Tmem218Squirrelmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

Molecular Function

  



Tmem218
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947107,270,364 - 107,287,819 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,517,113 - 1,535,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367431,519,531 - 1,535,302 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM218
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811125,094,389 - 125,111,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11125,094,389 - 125,111,763 (-)EnsemblGRCh38hg38GRCh38
GRCh3711124,964,285 - 124,981,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611124,471,608 - 124,478,415 (-)NCBINCBI36Build 36hg18NCBI36
Celera11122,126,435 - 122,133,242 (-)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11120,906,345 - 120,923,734 (-)NCBIHuRef
CHM1_111124,850,310 - 124,867,709 (-)NCBICHM1_1
T2T-CHM13v2.011125,123,053 - 125,140,287 (-)NCBIT2T-CHM13v2.0
Tmem218
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39937,119,519 - 37,134,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl937,119,519 - 37,135,996 (+)EnsemblGRCm39 Ensembl
GRCm38937,208,223 - 37,223,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl937,208,223 - 37,224,700 (+)EnsemblGRCm38mm10GRCm38
MGSCv37937,015,918 - 37,030,796 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36936,958,004 - 36,972,882 (+)NCBIMGSCv36mm8
Celera934,421,339 - 34,437,444 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.74NCBI
Tmem218
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,113,368 - 45,128,739 (+)NCBIGRCr8
mRatBN7.2836,924,553 - 36,940,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl836,924,585 - 36,939,927 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx840,934,537 - 40,949,885 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0839,217,611 - 39,232,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0837,080,514 - 37,095,863 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0839,687,280 - 39,702,722 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl839,687,269 - 39,702,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0839,687,841 - 39,704,008 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4838,459,286 - 38,474,642 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1838,468,051 - 38,483,407 (+)NCBI
Celera837,505,411 - 37,520,737 (-)NCBICelera
Cytogenetic Map8q22NCBI
Tmem218
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541226,151,452 - 26,166,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541226,149,816 - 26,166,470 (-)NCBIChiLan1.0ChiLan1.0
TMEM218
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29125,791,275 - 125,807,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111126,897,561 - 126,912,333 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,924,220 - 119,938,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111123,838,459 - 123,853,190 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11123,839,054 - 123,843,682 (-)Ensemblpanpan1.1panPan2
TMEM218
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.159,363,910 - 9,377,471 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl59,371,556 - 9,377,112 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha59,408,241 - 9,422,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.059,302,550 - 9,316,639 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl59,310,764 - 9,318,422 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.159,375,367 - 9,389,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.059,345,896 - 9,359,966 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.059,382,459 - 9,396,547 (+)NCBIUU_Cfam_GSD_1.0
TMEM218
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl952,260,508 - 52,302,638 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1952,270,691 - 52,302,766 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2957,773,829 - 57,818,268 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM218
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,257,539 - 116,272,815 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1116,257,158 - 116,272,859 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660439,849,776 - 9,864,598 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem218
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249271,136,636 - 1,163,757 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249271,137,223 - 1,163,880 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSSTOT00000016312   ⟹   ENSSTOP00000014604
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367431,517,113 - 1,535,329 (-)Ensembl
RefSeq Acc Id: XM_005339533   ⟹   XP_005339590
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947107,270,364 - 107,287,819 (-)NCBI
SpeTri2.0NW_0049367431,519,531 - 1,535,301 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719579   ⟹   XP_021575254
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947107,270,364 - 107,287,819 (-)NCBI
SpeTri2.0NW_0049367431,519,531 - 1,535,302 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719580   ⟹   XP_021575255
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947107,270,364 - 107,287,656 (-)NCBI
SpeTri2.0NW_0049367431,519,531 - 1,535,213 (-)NCBI
Sequence:
Protein RefSeqs XP_005339590 (Get FASTA)   NCBI Sequence Viewer  
  XP_021575254 (Get FASTA)   NCBI Sequence Viewer  
  XP_021575255 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014604.3
GenBank Protein KAG3286889 (Get FASTA)   NCBI Sequence Viewer  
  KAG3286890 (Get FASTA)   NCBI Sequence Viewer  
  KAG3286891 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005339590   ⟸   XM_005339533
- UniProtKB: I3MRB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021575254   ⟸   XM_021719579
- UniProtKB: I3MRB3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021575255   ⟸   XM_021719580
- UniProtKB: I3MRB3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000014604   ⟸   ENSSTOT00000016312



Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000016309 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016312.3 UniProtKB/TrEMBL
InterPro Tmem218 UniProtKB/TrEMBL
NCBI Gene Tmem218 ENTREZGENE
PANTHER PTHR31622 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 218 UniProtKB/TrEMBL
UniProt I3MRB3 ENTREZGENE, UniProtKB/TrEMBL