Frmpd1 (FERM and PDZ domain containing 1) - Rat Genome Database

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Gene: Frmpd1 (FERM and PDZ domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Frmpd1
Name: FERM and PDZ domain containing 1
RGD ID: 12667786
Description: INVOLVED IN light adaption (ortholog); protein transport (ortholog); response to light intensity (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cell cortex (inferred); cytoskeleton (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FERM and PDZ domain containing 1, transcript variant X1; FERM and PDZ domain containing 1, transcript variant X2; FERM and PDZ domain containing 1, transcript variant X3; FERM and PDZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947168,836,752 - 169,009,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365245,469,422 - 5,557,117 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365245,469,495 - 5,557,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Frmpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947168,836,752 - 169,009,535 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365245,469,422 - 5,557,117 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365245,469,495 - 5,557,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRMPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,603,229 - 37,746,904 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,650,954 - 37,746,904 (+)EnsemblGRCh38hg38GRCh38
GRCh37937,603,226 - 37,746,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,641,052 - 37,736,901 (+)NCBINCBI36Build 36hg18NCBI36
Build 34937,641,051 - 37,736,901NCBI
Celera937,584,272 - 37,680,095 (+)NCBICelera
Cytogenetic Map9p13.2NCBI
HuRef937,603,099 - 37,698,949 (+)NCBIHuRef
CHM1_1937,652,768 - 37,748,636 (+)NCBICHM1_1
T2T-CHM13v2.0937,626,930 - 37,770,615 (+)NCBIT2T-CHM13v2.0
Frmpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,183,958 - 45,285,936 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,184,875 - 45,285,936 (+)EnsemblGRCm39 Ensembl
GRCm38445,184,420 - 45,285,936 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,184,875 - 45,285,936 (+)EnsemblGRCm38mm10GRCm38
MGSCv37445,198,726 - 45,300,183 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36445,206,006 - 45,307,475 (+)NCBIMGSCv36mm8
Celera445,205,799 - 45,307,566 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.77NCBI
Frmpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,238,730 - 64,340,778 (+)NCBIGRCr8
mRatBN7.2559,443,076 - 59,545,125 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,443,076 - 59,545,080 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx561,417,025 - 61,519,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,236,550 - 63,338,911 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,205,781 - 63,308,130 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,735,413 - 60,837,773 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,809,762 - 60,837,764 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,243,896 - 65,346,330 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,748,052 - 61,849,848 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1561,792,640 - 61,849,904 (+)NCBI
Celera558,011,145 - 58,113,460 (+)NCBICelera
Cytogenetic Map5q22NCBI
Frmpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541928,716,494 - 28,888,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541928,717,277 - 28,888,486 (-)NCBIChiLan1.0ChiLan1.0
FRMPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,841,662 - 86,987,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1986,847,604 - 86,946,318 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0937,497,210 - 37,595,867 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1938,421,706 - 38,519,025 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl938,421,706 - 38,519,025 (+)Ensemblpanpan1.1panPan2
FRMPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11153,901,625 - 54,051,885 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1153,939,807 - 54,051,756 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1152,402,723 - 52,477,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,010,993 - 55,161,059 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1155,021,901 - 55,161,057 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11153,509,177 - 53,659,218 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,538,813 - 53,688,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,234,835 - 54,385,113 (+)NCBIUU_Cfam_GSD_1.0
FRMPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,371,336 - 238,511,715 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,371,311 - 238,511,714 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21266,330,435 - 266,446,687 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FRMPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,835,352 - 42,981,017 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1242,835,350 - 42,980,486 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603839,902,811 - 40,001,686 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Frmpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249301,268,904 - 1,364,230 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249301,268,527 - 1,364,017 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000009844   ⟹   ENSSTOP00000008828
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365245,469,422 - 5,557,117 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032432   ⟹   ENSSTOP00000026654
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365245,476,852 - 5,557,117 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000041428   ⟹   ENSSTOP00000025815
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365245,482,911 - 5,557,117 (+)Ensembl
RefSeq Acc Id: XM_005326298   ⟹   XP_005326355
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,921,894 - 169,009,535 (+)NCBI
SpeTri2.0NW_0049365245,469,495 - 5,557,109 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726996   ⟹   XP_021582671
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,921,894 - 169,009,535 (+)NCBI
SpeTri2.0NW_0049365245,469,495 - 5,557,109 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286059   ⟹   XP_040141993
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,921,894 - 169,009,535 (+)NCBI
RefSeq Acc Id: XM_040286060   ⟹   XP_040141994
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,921,898 - 169,009,535 (+)NCBI
RefSeq Acc Id: XM_040286061   ⟹   XP_040141995
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,943,306 - 169,009,535 (+)NCBI
RefSeq Acc Id: XM_040286062   ⟹   XP_040141996
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,836,752 - 169,009,535 (+)NCBI
RefSeq Acc Id: XM_040286063   ⟹   XP_040141997
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,924,720 - 169,009,535 (+)NCBI
RefSeq Acc Id: XM_040286064   ⟹   XP_040141998
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947168,921,894 - 169,009,535 (+)NCBI
RefSeq Acc Id: XP_005326355   ⟸   XM_005326298
- Peptide Label: isoform X4
- UniProtKB: I3MEC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582671   ⟸   XM_021726996
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040141996   ⟸   XM_040286062
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141993   ⟸   XM_040286059
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141998   ⟸   XM_040286064
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040141994   ⟸   XM_040286060
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141997   ⟸   XM_040286063
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141995   ⟸   XM_040286061
- Peptide Label: isoform X1
Ensembl Acc Id: ENSSTOP00000008828   ⟸   ENSSTOT00000009844
Ensembl Acc Id: ENSSTOP00000025815   ⟸   ENSSTOT00000041428
Ensembl Acc Id: ENSSTOP00000026654   ⟸   ENSSTOT00000032432
Protein Domains
FERM   PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009836 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009844.3 UniProtKB/TrEMBL
  ENSSTOT00000032432.1 UniProtKB/TrEMBL
  ENSSTOT00000041428.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FRMPD1/3/4_FERM_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Frmpd1 ENTREZGENE
PANTHER FERM AND PDZ DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER UniProtKB/TrEMBL
Pfam FERM_M UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PROSITE FERM_3 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt I3MEC1 ENTREZGENE, UniProtKB/TrEMBL