Tnpo3 (transportin 3) - Rat Genome Database

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Gene: Tnpo3 (transportin 3) Ictidomys tridecemlineatus
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Symbol: Tnpo3
Name: transportin 3
RGD ID: 12659278
Description: ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN protein import into nucleus (ortholog); ASSOCIATED WITH autosomal dominant limb-girdle muscular dystrophy type 2 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN annulate lamellae (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: transportin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,915,334 - 26,001,614 (+)NCBI
SpeTri2.0NW_0049365796,047,900 - 6,134,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Tnpo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,915,334 - 26,001,614 (+)NCBI
SpeTri2.0NW_0049365796,047,900 - 6,134,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNPO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7128,954,180 - 129,055,173 (-)EnsemblGRCh38hg38GRCh38
GRCh387128,954,185 - 129,055,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh377128,594,239 - 128,695,165 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,382,184 - 128,482,434 (-)NCBINCBI36hg18NCBI36
Build 347128,188,898 - 128,289,149NCBI
Celera7123,390,730 - 123,491,720 (-)NCBI
Cytogenetic Map7q32.1NCBI
HuRef7122,955,420 - 123,056,377 (-)NCBIHuRef
CHM1_17128,527,540 - 128,628,528 (-)NCBICHM1_1
CRA_TCAGchr7v27127,977,977 - 128,078,965 (-)NCBI
Tnpo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,540,826 - 29,609,918 (-)NCBIGRCm39mm39
GRCm39 Ensembl629,540,826 - 29,609,886 (-)Ensembl
GRCm38629,540,827 - 29,609,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,540,827 - 29,609,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv37629,490,827 - 29,559,607 (-)NCBIGRCm37mm9NCBIm37
MGSCv36629,490,837 - 29,559,617 (-)NCBImm8
Celera629,549,675 - 29,618,438 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Tnpo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2458,142,954 - 58,220,365 (-)NCBI
Rnor_6.0 Ensembl456,820,023 - 56,897,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0456,820,023 - 56,897,310 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0456,587,184 - 56,664,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,422,446 - 56,499,733 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1456,682,348 - 56,760,325 (-)NCBI
Celera453,250,776 - 53,328,057 (-)NCBICelera
Cytogenetic Map4q22NCBI
Tnpo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,740,805 - 9,831,339 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,739,927 - 9,831,276 (-)NCBIChiLan1.0ChiLan1.0
TNPO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17133,430,495 - 133,531,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,430,490 - 133,531,774 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07120,906,238 - 121,008,216 (-)NCBIMhudiblu_PPA_v0panPan3
TNPO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,639,276 - 7,722,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,639,558 - 7,722,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,326,495 - 7,409,297 (+)NCBI
ROS_Cfam_1.0147,405,066 - 7,488,297 (+)NCBI
UMICH_Zoey_3.1147,610,134 - 7,693,338 (+)NCBI
UNSW_CanFamBas_1.0147,352,085 - 7,435,363 (+)NCBI
UU_Cfam_GSD_1.0147,497,117 - 7,580,541 (+)NCBI
TNPO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,572,811 - 19,673,166 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,572,555 - 19,673,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,641,615 - 20,742,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNPO3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,554,484 - 97,654,289 (-)NCBI
ChlSab1.1 Ensembl2197,553,519 - 97,653,889 (-)Ensembl
Tnpo3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247837,168,865 - 7,261,008 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005331120   ⟹   XP_005331177
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511825,915,334 - 26,001,614 (+)NCBI
SpeTri2.0NW_0049365796,047,900 - 6,134,211 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005331122   ⟹   XP_005331179
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511825,915,334 - 26,001,614 (+)NCBI
SpeTri2.0NW_0049365796,047,900 - 6,133,344 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730400   ⟹   XP_021586075
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365796,074,825 - 6,134,189 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331177 (Get FASTA)   NCBI Sequence Viewer  
  XP_005331179 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005331177   ⟸   XM_005331120
- Peptide Label: isoform X1
- UniProtKB: A0A287CZX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005331179   ⟸   XM_005331122
- Peptide Label: isoform X2
- UniProtKB: I3M529 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586075   ⟸   XM_021730400
- Peptide Label: isoform X3
- Sequence:
Protein Domains
Xpo1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004885 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000004394 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000024422 UniProtKB/TrEMBL
  ENSSTOP00000026794 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004900 UniProtKB/TrEMBL
  ENSSTOT00000032504 UniProtKB/TrEMBL
  ENSSTOT00000037709 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
NCBI Gene Tnpo3 ENTREZGENE
Pfam Xpo1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A287CZX4 ENTREZGENE, UniProtKB/TrEMBL
  I3M529 ENTREZGENE, UniProtKB/TrEMBL