Crisp1 (cysteine rich secretory protein 1) - Rat Genome Database

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Gene: Crisp1 (cysteine rich secretory protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Crisp1
Name: cysteine rich secretory protein 1
RGD ID: 12646986
Description: ENCODES a protein that exhibits calcium channel regulator activity (inferred); INVOLVED IN binding of sperm to zona pellucida (ortholog); regulation of acrosome reaction (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine-rich secretory protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494653,207,268 - 53,230,604 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647610,729,610 - 10,752,933 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647610,729,598 - 10,753,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Crisp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494653,207,268 - 53,230,604 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647610,729,610 - 10,752,933 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647610,729,598 - 10,753,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRISP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38649,834,257 - 49,877,096 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl649,834,257 - 49,877,096 (-)EnsemblGRCh38hg38GRCh38
GRCh37649,801,970 - 49,844,809 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36649,909,929 - 49,942,177 (-)NCBINCBI36Build 36hg18NCBI36
Celera651,358,053 - 51,390,301 (-)NCBICelera
Cytogenetic Map6p12.3NCBI
HuRef649,532,400 - 49,575,243 (-)NCBIHuRef
CHM1_1649,804,885 - 49,847,721 (-)NCBICHM1_1
T2T-CHM13v2.0649,676,220 - 49,719,057 (-)NCBIT2T-CHM13v2.0
Crisp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39118,185,113 - 18,216,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl118,185,415 - 18,216,126 (-)EnsemblGRCm39 Ensembl
GRCm38118,114,889 - 18,145,902 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl118,115,191 - 18,145,902 (-)EnsemblGRCm38mm10GRCm38
MGSCv37118,105,272 - 18,127,132 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36118,100,405 - 18,122,265 (-)NCBIMGSCv36mm8
Celera118,019,226 - 18,041,066 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.65NCBI
Crisp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8928,238,326 - 28,265,344 (-)NCBIGRCr8
mRatBN7.2920,741,775 - 20,768,796 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,741,777 - 20,768,796 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx929,272,264 - 29,299,315 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0934,375,604 - 34,415,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0932,686,420 - 32,726,441 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0924,356,577 - 24,383,679 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl924,356,579 - 24,383,679 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0923,218,716 - 23,245,318 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4916,975,151 - 17,002,149 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera918,378,604 - 18,405,902 (-)NCBICelera
Cytogenetic Map9q13NCBI
CRISP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2564,319,223 - 64,358,792 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1660,184,866 - 60,221,060 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0649,404,220 - 49,452,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1650,665,193 - 50,712,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl650,665,204 - 50,712,092 (-)Ensemblpanpan1.1panPan2
CRISP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11217,659,446 - 17,696,557 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1217,555,565 - 17,595,087 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01218,153,788 - 18,193,483 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.01217,779,242 - 17,812,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01217,909,484 - 17,942,885 (-)NCBIUU_Cfam_GSD_1.0
CRISP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl743,883,539 - 43,911,664 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1743,883,536 - 43,911,877 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2750,275,809 - 50,303,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRISP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11722,539,467 - 22,581,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1722,551,309 - 22,579,116 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604449,798,950 - 49,845,592 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013355730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000020112   ⟹   ENSSTOP00000017413
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647610,729,610 - 10,752,933 (+)Ensembl
RefSeq Acc Id: XM_013355730   ⟹   XP_013211184
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494653,207,268 - 53,230,604 (-)NCBI
SpeTri2.0NW_00493647610,729,598 - 10,753,000 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013211184 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017413.1
GenBank Protein KAG3289610 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013211184   ⟸   XM_013355730
- UniProtKB: I3MZ67 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000017413   ⟸   ENSSTOT00000020112
Protein Domains
ShKT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025570 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020112.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.740 UniProtKB/TrEMBL
  3.40.33.10 UniProtKB/TrEMBL
InterPro Allrgn_V5/Tpx1_CS UniProtKB/TrEMBL
  CAP_domain UniProtKB/TrEMBL
  CAP_sf UniProtKB/TrEMBL
  Crisp-like_dom UniProtKB/TrEMBL
  CRISP-related UniProtKB/TrEMBL
  Cysteine_rich_secretory UniProtKB/TrEMBL
  SCP_CRISP UniProtKB/TrEMBL
  ShKT_dom UniProtKB/TrEMBL
  V5_allergen-like UniProtKB/TrEMBL
NCBI Gene Crisp1 ENTREZGENE
PANTHER CYSTEINE-RICH SECRETORY PROTEIN 1 UniProtKB/TrEMBL
  PTHR10334 UniProtKB/TrEMBL
Pfam CAP UniProtKB/TrEMBL
  Crisp UniProtKB/TrEMBL
PRINTS V5ALLERGEN UniProtKB/TrEMBL
  V5TPXLIKE UniProtKB/TrEMBL
PROSITE CRISP_1 UniProtKB/TrEMBL
  CRISP_2 UniProtKB/TrEMBL
  SHKT UniProtKB/TrEMBL
SMART SCP UniProtKB/TrEMBL
Superfamily-SCOP Crisp domain-like UniProtKB/TrEMBL
  SSF55797 UniProtKB/TrEMBL
UniProt I3MZ67 ENTREZGENE, UniProtKB/TrEMBL