CUNH2orf68 (chromosome unknown C2orf68 homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CUNH2orf68 (chromosome unknown C2orf68 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: CUNH2orf68 (Ensembl: C2orf68)
Name: chromosome unknown C2orf68 homolog (Ensembl:chromosome 2 open reading frame 68)
RGD ID: 12642341
Description: ASSOCIATED WITH hereditary spastic paraplegia 31 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C2orf68; LOC101955046; UPF0561 protein C2orf68 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,189,872 - 79,194,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,663,700 - 1,665,081 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,663,700 - 1,665,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CUNH2orf68
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,189,872 - 79,194,742 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,663,700 - 1,665,081 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,663,700 - 1,665,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2orf68
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,605,254 - 85,612,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,605,254 - 85,612,066 (-)EnsemblGRCh38hg38GRCh38
GRCh37285,832,377 - 85,839,189 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,687,288 - 85,692,663 (-)NCBINCBI36Build 36hg18NCBI36
Celera285,660,660 - 85,667,462 (-)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,729,515 - 85,736,316 (-)NCBIHuRef
CHM1_1285,762,182 - 85,768,964 (-)NCBICHM1_1
T2T-CHM13v2.0285,607,314 - 85,614,126 (-)NCBIT2T-CHM13v2.0
0610030E20Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,324,017 - 72,330,145 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,324,300 - 72,330,131 (+)EnsemblGRCm39 Ensembl
GRCm38672,347,034 - 72,353,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,347,317 - 72,353,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,297,311 - 72,303,156 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,276,540 - 72,282,671 (+)NCBIMGSCv36mm8
Celera674,437,610 - 74,443,427 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
C4h2orf68
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,960,543 - 105,966,509 (+)NCBIGRCr8
mRatBN7.24104,402,553 - 104,408,317 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,402,588 - 104,408,320 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04100,208,612 - 100,215,824 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,209,951 - 100,212,122 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,979,368 - 164,986,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,652,663 - 105,654,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera493,555,131 - 93,562,343 (+)NCBICelera
Cytogenetic Map4q32NCBI
CUNH2orf68
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,895,757 - 1,897,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,895,757 - 1,897,797 (+)NCBIChiLan1.0ChiLan1.0
C12H2orf68
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,768,042 - 40,776,030 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,770,646 - 40,777,161 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,657,948 - 85,665,459 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,208,355 - 87,215,102 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,208,355 - 87,215,102 (-)Ensemblpanpan1.1panPan2
C17H2orf68
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,472,158 - 39,477,774 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,472,257 - 39,474,141 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,143,531 - 39,149,144 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,218,781 - 40,224,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1740,218,658 - 40,224,397 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,348,309 - 39,353,932 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,420,363 - 39,425,984 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,819,953 - 39,825,566 (+)NCBIUU_Cfam_GSD_1.0
C3H2orf68
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,156,669 - 59,163,170 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,156,655 - 59,163,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,217,736 - 62,224,253 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH2orf68
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,545,591 - 21,552,705 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,545,976 - 21,553,589 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604590,916,126 - 90,922,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH2orf68
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,529,490 - 17,531,435 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,529,389 - 17,535,199 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000031443   ⟹   ENSSTOP00000031672
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367121,663,700 - 1,665,081 (+)Ensembl
RefSeq Acc Id: XM_040271622   ⟹   XP_040127556
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,193,373 - 79,194,742 (-)NCBI
RefSeq Acc Id: XM_040271623   ⟹   XP_040127557
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629279,189,872 - 79,194,742 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040127556 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127557 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000031672.1
GenBank Protein KAG3267927 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040127557   ⟸   XM_040271623
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040127556   ⟸   XM_040271622
- Peptide Label: isoform X1
- UniProtKB: A0A287DDP2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000031672   ⟸   ENSSTOT00000031443


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000032886 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000031443.1 UniProtKB/TrEMBL
InterPro UPF0561 UniProtKB/TrEMBL
NCBI Gene LOC101955046 ENTREZGENE
PANTHER PTHR34256 UniProtKB/TrEMBL
  UPF0561 PROTEIN C2ORF68 UniProtKB/TrEMBL
Pfam UPF0561 UniProtKB/TrEMBL
UniProt A0A287DDP2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 CUNH2orf68  chromosome unknown C2orf68 homolog  LOC101955046  chromosome unknown open reading frame, human C2orf68  Symbol and/or name change 5135510 APPROVED