0610030E20Rik (RIKEN cDNA 0610030E20 gene) - Rat Genome Database
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Gene: 0610030E20Rik (RIKEN cDNA 0610030E20 gene) Mus musculus
Analyze
Symbol: 0610030E20Rik
Name: RIKEN cDNA 0610030E20 gene
RGD ID: 1618356
MGI Page MGI
Description: Orthologous to human C2orf68 (chromosome 2 open reading frame 68); INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine (ortholog); antirheumatic drug (ortholog); arsane (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1500031N04Rik; 2810411C16Rik; AI461894; hypothetical protein LOC68364; UPF0561 protein C2orf68 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,324,017 - 72,330,145 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,324,300 - 72,330,131 (+)Ensembl
GRCm38672,347,034 - 72,353,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,347,317 - 72,353,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,297,311 - 72,303,156 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,276,540 - 72,282,671 (+)NCBImm8
Celera674,437,610 - 74,443,427 (+)NCBICelera
Cytogenetic Map6C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16778019   PMID:21267068  


Genomics

Comparative Map Data
0610030E20Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,324,017 - 72,330,145 (+)NCBIGRCm39mm39
GRCm39 Ensembl672,324,300 - 72,330,131 (+)Ensembl
GRCm38672,347,034 - 72,353,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,347,317 - 72,353,148 (+)EnsemblGRCm38mm10GRCm38
MGSCv37672,297,311 - 72,303,156 (+)NCBIGRCm37mm9NCBIm37
MGSCv36672,276,540 - 72,282,671 (+)NCBImm8
Celera674,437,610 - 74,443,427 (+)NCBICelera
Cytogenetic Map6C1NCBI
C2orf68
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl285,605,254 - 85,612,066 (-)EnsemblGRCh38hg38GRCh38
GRCh38285,605,254 - 85,612,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37285,832,377 - 85,839,189 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,687,288 - 85,692,663 (-)NCBINCBI36hg18NCBI36
Celera285,660,660 - 85,667,462 (-)NCBI
Cytogenetic Map2p11.2NCBI
HuRef285,729,515 - 85,736,316 (-)NCBIHuRef
CHM1_1285,762,182 - 85,768,964 (-)NCBICHM1_1
LOC691113
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24104,402,553 - 104,408,317 (+)NCBI
Rnor_6.0 Ensembl4100,209,951 - 100,212,122 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04100,208,612 - 100,215,824 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04164,979,368 - 164,986,577 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,652,663 - 105,654,438 (+)NCBIRGSC3.4rn4RGSC3.4
Celera493,555,131 - 93,562,343 (+)NCBICelera
Cytogenetic Map4q31NCBI
LOC102026763
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,895,757 - 1,897,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,895,757 - 1,897,797 (+)NCBIChiLan1.0ChiLan1.0
C2AH2orf68
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A87,208,355 - 87,215,102 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,208,355 - 87,215,102 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A85,657,948 - 85,665,459 (-)NCBIMhudiblu_PPA_v0panPan3
C17H2orf68
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1739,472,257 - 39,474,141 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11739,472,158 - 39,477,774 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH2orf68
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367121,663,700 - 1,665,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H2orf68
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,156,663 - 59,163,174 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,156,655 - 59,163,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,217,736 - 62,224,253 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH2orf68
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,545,591 - 21,552,705 (+)NCBI
ChlSab1.1 Ensembl1421,545,976 - 21,553,589 (+)Ensembl
CUNH2orf68
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474917,529,389 - 17,535,199 (+)NCBI

Position Markers
AI461894  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,352,870 - 72,353,019UniSTSGRCm38
MGSCv37672,302,864 - 72,303,013UniSTSGRCm37
Celera674,443,135 - 74,443,284UniSTS
Cytogenetic Map6C3UniSTS
Whitehead/MRC_RH6721.28UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080600000Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414873387692Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62500000080000000Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3285065078238974Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64160000075600000Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64211637376116515Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64211637376116515Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64211637376116515Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64211637376116515Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64382681377811523Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64382681377811523Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64382681377811523Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64382681377811523Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64382681377811523Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64382681377811523Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4872655675447710Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1536
Count of miRNA genes:652
Interacting mature miRNAs:846
Transcripts:ENSMUST00000077783
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000077783   ⟹   ENSMUSP00000076957
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,347,334 - 72,353,148 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204152
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,347,367 - 72,350,617 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205472
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,347,326 - 72,349,175 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205578
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl672,347,317 - 72,351,216 (+)Ensembl
RefSeq Acc Id: NM_026696   ⟹   NP_080972
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,324,300 - 72,330,145 (+)NCBI
GRCm38672,347,317 - 72,353,162 (+)NCBI
MGSCv37672,297,311 - 72,303,156 (+)RGD
Celera674,437,610 - 74,443,427 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506534   ⟹   XP_006506597
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,324,017 - 72,330,131 (+)NCBI
GRCm38672,347,034 - 72,353,154 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080972   ⟸   NM_026696
- UniProtKB: Q149G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506597   ⟸   XM_006506534
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000076957   ⟸   ENSMUST00000077783

Promoters
RGD ID:6838690
Promoter ID:MM_KWN:46452
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026696
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,297,181 - 72,297,747 (+)MPROMDB
RGD ID:6890008
Promoter ID:EPDNEW_M8455
Type:initiation region
Name:0610030E20Rik_1
Description:Mus musculus RIKEN cDNA 0610030E20 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,347,326 - 72,347,386EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915614 AgrOrtholog
Ensembl Genes ENSMUSG00000058706 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSG00000108680 UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000076957 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141754 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000077783 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000192144 UniProtKB/Swiss-Prot
InterPro UPF0561 UniProtKB/Swiss-Prot
KEGG Report mmu:68364 UniProtKB/Swiss-Prot
MGD MGI:1915614 ENTREZGENE
NCBI Gene 68364 ENTREZGENE
PANTHER PTHR34256 UniProtKB/Swiss-Prot
Pfam UPF0561 UniProtKB/Swiss-Prot
PhenoGen 0610030E20Rik PhenoGen
UniProt CB068_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9DCK6 UniProtKB/Swiss-Prot