Eif2b1 (eukaryotic translation initiation factor 2B subunit alpha) - Rat Genome Database

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Gene: Eif2b1 (eukaryotic translation initiation factor 2B subunit alpha) Ictidomys tridecemlineatus
Analyze
Symbol: Eif2b1
Name: eukaryotic translation initiation factor 2B subunit alpha
RGD ID: 12633094
Description: ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); translation initiation factor activity (ortholog); INVOLVED IN negative regulation of guanyl-nucleotide exchange factor activity (ortholog); response to amino acid starvation (ortholog); response to glucose (ortholog); PARTICIPATES IN translation initiation pathway; ASSOCIATED WITH Animal Disease Models (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN eukaryotic translation initiation factor 2 complex (ortholog); eukaryotic translation initiation factor 2B complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: translation initiation factor eIF-2B subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,273,558 - 158,283,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,196,068 - 1,205,867 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,196,111 - 1,205,321 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1Squirrelepilepsy  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVar 
Eif2b1Squirrelgenetic disease  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Eif2b1SquirrelJoubert syndrome 1  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:28492532
Eif2b1SquirrelLeukoencephalopathies  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: CACH/VWM syndromeClinVarPMID:11835386 more ...
Eif2b1Squirrelleukoencephalopathy with vanishing white matter  ISOEIF2B1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11835386 more ...
Eif2b1Squirrelleukoencephalopathy with vanishing white matter 1  ISOEIF2B1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11835386 more ...
Eif2b1Squirrelleukoencephalopathy with vanishing white matter 5  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: Cree leukoencephalopathyClinVarPMID:11835386 more ...
Eif2b1Squirrelmicrocephaly  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868
Eif2b1Squirrelshort chain acyl-CoA dehydrogenase deficiency  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: Deficiency of butyryl-CoA dehydrogenaseClinVarPMID:28492532
Eif2b1Squirrelvisual epilepsy  ISOEIF2B1 (Homo sapiens)8554872ClinVar Annotator: match by term: Focal seizuresClinVar 
1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1SquirrelAnimal Disease Models  ISOEIF2B1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:27602772
Eif2b1Squirrellung adenocarcinoma  ISOEIF2B1 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:27602772
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1Squirrelleukoencephalopathy with vanishing white matter 1  ISOEIF2B1 (Homo sapiens)7240710 OMIM 


Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1Squirrelcytoplasmic translational initiation involved_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirrelnegative regulation of guanyl-nucleotide exchange factor activity  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:9582312 and REF_RGD_ID:1581075
Eif2b1Squirreloligodendrocyte development involved_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirrelresponse to amino acid starvation  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:11500297 and REF_RGD_ID:1581065
Eif2b1Squirrelresponse to glucose involved_inISOEif2b1 (Rattus norvegicus)9068941PMID:8567668UniProtPMID:8567668 and REF_RGD_ID:8554699
Eif2b1Squirrelresponse to heat involved_inISOEif2b1 (Rattus norvegicus)9068941PMID:9341116UniProtPMID:9341116 and REF_RGD_ID:8554311
Eif2b1Squirrelresponse to peptide hormone involved_inISOEif2b1 (Rattus norvegicus)9068941PMID:8430778UniProtPMID:8430778 and REF_RGD_ID:8553606
Eif2b1SquirrelT cell receptor signaling pathway involved_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirreltranslation  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:3818593 and REF_RGD_ID:1581069
Eif2b1Squirreltranslation involved_inIEAUniProtKB-KW:KW-0648150520179 UniProtGO_REF:0000043
Eif2b1Squirreltranslational initiation  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:3818593 and REF_RGD_ID:1581069
Eif2b1Squirreltranslational initiation involved_inIEAUniProtKB-KW:KW-0396150520179 UniProtGO_REF:0000043
Eif2b1Squirreltranslational initiation involved_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirreltranslational initiation involved_inIEAPANTHER:PTN000028074150520179 TreeGrafterGO_REF:0000118
1 to 14 of 14 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1Squirrelcytoplasm located_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirrelcytosol located_inIEAUniProtKB-SubCell:SL-0091150520179 UniProtGO_REF:0000044
Eif2b1Squirreleukaryotic translation initiation factor 2 complex  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:3818593 and REF_RGD_ID:1581069
Eif2b1Squirreleukaryotic translation initiation factor 2B complex  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:9631509 and REF_RGD_ID:11041878
Eif2b1Squirreleukaryotic translation initiation factor 2B complex part_ofIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirreleukaryotic translation initiation factor 2B complex part_ofIEAPANTHER:PTN000028074150520179 TreeGrafterGO_REF:0000118
Eif2b1Squirrelmembrane located_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirrelplasma membrane located_inIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107

Molecular Function
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1SquirrelGDP binding  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:3818593 and REF_RGD_ID:1581069
Eif2b1SquirrelGTP binding  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:3818593 and REF_RGD_ID:1581069
Eif2b1Squirrelguanyl-nucleotide exchange factor activity enablesIEAPANTHER:PTN000028074150520179 TreeGrafterGO_REF:0000118
Eif2b1Squirrelguanyl-nucleotide exchange factor activity contributes_toIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirrelidentical protein binding enablesIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirrelprotein binding enablesISOPR:P454819068941 PMID:15752756MGIPMID:15752756
Eif2b1Squirrelprotein binding enablesISOUniProtKB:Q7KZS0 more ...9068941 PMID:32296183IntActPMID:32296183
Eif2b1Squirrelprotein binding enablesISOUniProtKB:Q7Z3Z2 more ...9068941 PMID:25416956 and PMID:31515488IntActPMID:25416956 and PMID:31515488
Eif2b1Squirrelprotein binding enablesISOUniProtKB:Q9H8Y89068941 PMID:29892012IntActPMID:29892012
Eif2b1Squirrelprotein binding enablesISOUniProtKB:P30545 and UniProtKB:Q013389068941 PMID:9235896IntActPMID:9235896
Eif2b1Squirreltranslation initiation factor activity enablesIEAPANTHER:PTN000028074150520179 TreeGrafterGO_REF:0000118
Eif2b1Squirreltranslation initiation factor activity contributes_toIEAUniProtKB:Q14232 and ensembl:ENSP00000416250150520179 EnsemblGO_REF:0000107
Eif2b1Squirreltranslation initiation factor activity enablesIEAUniProtKB-KW:KW-0396150520179 UniProtGO_REF:0000043
Eif2b1Squirreltranslation initiation factor activity  ISOEif2b1 (Rattus norvegicus)9068941 RGDPMID:3818593 more ...
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RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif2b1Squirreltranslation initiation pathway  ISOEIF2B1 (Homo sapiens)9068941 RGDPMID:22815232 and REF_RGD_ID:10044017
PMID:30032202  



Eif2b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,273,558 - 158,283,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,196,068 - 1,205,867 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,196,111 - 1,205,321 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF2B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,620,406 - 123,633,686 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,620,406 - 123,633,766 (-)EnsemblGRCh38hg38GRCh38
GRCh3712124,104,953 - 124,118,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,671,523 - 122,684,200 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412122,630,458 - 122,642,993NCBI
Celera12123,702,006 - 123,714,759 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12121,066,914 - 121,079,569 (-)NCBIHuRef
CHM1_112123,926,519 - 123,939,272 (-)NCBICHM1_1
T2T-CHM13v2.012123,619,272 - 123,632,550 (-)NCBIT2T-CHM13v2.0
Eif2b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,708,277 - 124,717,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,708,276 - 124,717,194 (-)EnsemblGRCm39 Ensembl
GRCm385124,570,214 - 124,579,131 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,570,213 - 124,579,131 (-)EnsemblGRCm38mm10GRCm38
MGSCv375125,020,223 - 125,029,066 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,831,271 - 124,839,665 (-)NCBIMGSCv36mm8
Celera5121,646,913 - 121,655,757 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.67NCBI
Eif2b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,686,149 - 37,694,830 (+)NCBIGRCr8
mRatBN7.21232,025,593 - 32,033,848 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,025,557 - 32,046,601 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,203,928 - 33,212,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,815,249 - 33,824,093 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,867,116 - 32,875,960 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,444,136 - 37,452,391 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,444,072 - 37,465,398 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,315,146 - 39,323,401 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,138,323 - 33,146,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1233,715,011 - 33,723,266 (+)NCBICelera
Cytogenetic Map12q15NCBI
Eif2b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,380,121 - 5,388,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,380,121 - 5,388,588 (+)NCBIChiLan1.0ChiLan1.0
EIF2B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,695,932 - 131,708,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,692,309 - 131,704,680 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,206,380 - 121,218,749 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,433,227 - 125,445,418 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,433,227 - 125,446,665 (-)Ensemblpanpan1.1panPan2
EIF2B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,011,280 - 6,022,562 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,011,301 - 6,022,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,174,138 - 6,185,441 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,261,358 - 6,272,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,261,376 - 6,272,698 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,194,833 - 6,206,124 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,287,198 - 6,298,495 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,240,405 - 6,251,707 (+)NCBIUU_Cfam_GSD_1.0
EIF2B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,332,233 - 29,367,918 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,355,497 - 29,367,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,047,776 - 31,060,210 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF2B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,949,674 - 118,961,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,950,409 - 118,961,687 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,313,981 - 126,326,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif2b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,414,077 - 23,421,074 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,413,045 - 23,422,227 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005329552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000006159   ⟹   ENSSTOP00000005510
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365581,196,068 - 1,205,867 (+)Ensembl
RefSeq Acc Id: XM_005329552   ⟹   XP_005329609
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118158,273,558 - 158,283,344 (-)NCBI
SpeTri2.0NW_0049365581,196,111 - 1,205,321 (+)NCBI
Sequence:
Protein RefSeqs XP_005329609 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005510.2
GenBank Protein KAG3279163 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005329609   ⟸   XM_005329552
- UniProtKB: I3M7D1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000005510   ⟸   ENSSTOT00000006159



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000006157 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006159.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1070 UniProtKB/TrEMBL
  Translation initiation factor eif-2b, domain 2 UniProtKB/TrEMBL
InterPro eIF2B_alpha/beta/delta UniProtKB/TrEMBL
  elF-2B_alpha_N UniProtKB/TrEMBL
  IF-2B-related UniProtKB/TrEMBL
  IF_2B-like_C UniProtKB/TrEMBL
  NagB/RpiA_transferase-like UniProtKB/TrEMBL
NCBI Gene Eif2b1 ENTREZGENE
PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA UniProtKB/TrEMBL
  TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA UniProtKB/TrEMBL
Pfam IF-2B UniProtKB/TrEMBL
Superfamily-SCOP SSF100950 UniProtKB/TrEMBL
UniProt I3M7D1 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows