Septin4 (septin 4) - Rat Genome Database

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Gene: Septin4 (septin 4) Ictidomys tridecemlineatus
Analyze
Symbol: Septin4
Name: septin 4
RGD ID: 12623788
Description: ENCODES a protein that exhibits GTPase activity (ortholog); identical protein binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN brain development (ortholog); flagellated sperm motility (ortholog); hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH Fanconi anemia complementation group O (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 1 (ortholog); FOUND IN axon terminus (ortholog); cell projection (ortholog); dopaminergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C17orf47 homolog; chromosome unknown open reading frame, human C17orf47; CUNH17orf47; LOC101958082; Sept4; septin 4, transcript variant X1; septin 4, transcript variant X2; septin 4, transcript variant X3; septin 4, transcript variant X4; septin 4, transcript variant X5; septin 4, transcript variant X6; septin-4; uncharacterized protein C17orf47 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,465,161 - 32,489,497 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364904,597,888 - 4,609,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Septin4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,465,161 - 32,489,497 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364904,597,888 - 4,609,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381758,520,256 - 58,544,328 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1758,520,250 - 58,544,368 (-)EnsemblGRCh38hg38GRCh38
GRCh371756,597,617 - 56,621,689 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361753,952,615 - 53,964,410 (-)NCBINCBI36Build 36hg18NCBI36
Build 341753,952,614 - 53,961,662NCBI
Celera1753,059,414 - 53,071,208 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1751,957,926 - 51,978,501 (-)NCBIHuRef
CHM1_11756,663,185 - 56,683,752 (-)NCBICHM1_1
T2T-CHM13v2.01759,388,127 - 59,412,197 (-)NCBIT2T-CHM13v2.0
Septin4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,457,515 - 87,481,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,457,479 - 87,481,365 (+)EnsemblGRCm39 Ensembl
GRCm381187,566,689 - 87,590,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,566,653 - 87,590,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,394,633 - 87,404,041 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361187,397,326 - 87,406,734 (+)NCBIMGSCv36mm8
Celera1197,176,498 - 97,185,884 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.14NCBI
Septin4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,863,969 - 72,888,018 (+)NCBIGRCr8
mRatBN7.21072,366,729 - 72,390,764 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1072,366,873 - 72,390,768 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,991,820 - 77,001,272 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01076,496,732 - 76,506,185 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,961,249 - 71,970,702 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,860,068 - 74,884,196 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,861,714 - 74,884,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,217,843 - 75,227,838 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,871,422 - 75,880,878 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,885,791 - 75,895,248 (+)NCBI
Celera1071,297,013 - 71,304,586 (+)NCBICelera
Cytogenetic Map10q26NCBI
Septin4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554514,505,318 - 4,530,387 (+)NCBIChiLan1.0ChiLan1.0
LOC100988353
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21974,690,865 - 74,702,719 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11779,502,168 - 79,514,002 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01752,595,185 - 52,607,020 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11757,448,904 - 57,472,837 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1757,448,904 - 57,472,690 (-)Ensemblpanpan1.1panPan2
SEPTIN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11234,772,776 - 34,785,176 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,013,607 - 36,043,161 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,863,357 - 34,887,433 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660775,677,698 - 5,701,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624871330,225 - 402,327 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005321573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005321575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013357071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021724081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040269047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005726391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005321572   ⟹   XP_005321629
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,474,449 (-)NCBI
SpeTri2.0NW_0049364904,600,307 - 4,609,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005321573   ⟹   XP_005321630
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,477,177 (-)NCBI
SpeTri2.0NW_0049364904,597,888 - 4,609,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005321575   ⟹   XP_005321632
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,474,449 (-)NCBI
SpeTri2.0NW_0049364904,600,336 - 4,609,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013357068   ⟹   XP_013212522
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,477,170 (-)NCBI
SpeTri2.0NW_0049364904,597,892 - 4,609,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021724081   ⟹   XP_021579756
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,474,427 (-)NCBI
SpeTri2.0NW_0049364904,600,286 - 4,609,905 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269037   ⟹   XP_040124971
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,489,476 (-)NCBI
RefSeq Acc Id: XM_040269038   ⟹   XP_040124972
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,489,446 (-)NCBI
RefSeq Acc Id: XM_040269039   ⟹   XP_040124973
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,489,452 (-)NCBI
RefSeq Acc Id: XM_040269040   ⟹   XP_040124974
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,470,311 - 32,489,475 (-)NCBI
RefSeq Acc Id: XM_040269042   ⟹   XP_040124976
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,486,184 (-)NCBI
RefSeq Acc Id: XM_040269043   ⟹   XP_040124977
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,476,591 (-)NCBI
RefSeq Acc Id: XM_040269044   ⟹   XP_040124978
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,474,377 (-)NCBI
RefSeq Acc Id: XM_040269045   ⟹   XP_040124979
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,473,050 (-)NCBI
RefSeq Acc Id: XM_040269046   ⟹   XP_040124980
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,473,315 (-)NCBI
RefSeq Acc Id: XM_040269047   ⟹   XP_040124981
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,465,161 - 32,477,130 (-)NCBI
RefSeq Acc Id: XR_005726391
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560232,470,375 - 32,489,497 (-)NCBI
RefSeq Acc Id: XP_005321630   ⟸   XM_005321573
- Peptide Label: isoform X7
- UniProtKB: A0A287D4H7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212522   ⟸   XM_013357068
- Peptide Label: isoform X11
- UniProtKB: A0A287D466 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005321629   ⟸   XM_005321572
- Peptide Label: isoform X6
- UniProtKB: A0A287D3H7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005321632   ⟸   XM_005321575
- Peptide Label: isoform X10
- UniProtKB: I3N8Y6 (UniProtKB/TrEMBL),   A0A287D466 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579756   ⟸   XM_021724081
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_040124971   ⟸   XM_040269037
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040124973   ⟸   XM_040269039
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040124972   ⟸   XM_040269038
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040124976   ⟸   XM_040269042
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040124981   ⟸   XM_040269047
- Peptide Label: isoform X13
- UniProtKB: A0A287D466 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040124977   ⟸   XM_040269043
- Peptide Label: isoform X8
- UniProtKB: A0A287D4H7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040124978   ⟸   XM_040269044
- Peptide Label: isoform X12
- UniProtKB: A0A287D466 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040124980   ⟸   XM_040269046
- Peptide Label: isoform X13
- UniProtKB: A0A287D466 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040124979   ⟸   XM_040269045
- Peptide Label: isoform X13
- UniProtKB: A0A287D466 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040124974   ⟸   XM_040269040
- Peptide Label: isoform X4
Protein Domains
Septin-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012811 UniProtKB/TrEMBL
  ENSSTOG00000028582 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029475.2 UniProtKB/TrEMBL
  ENSSTOT00000029655.2 UniProtKB/TrEMBL
  ENSSTOT00000034543.1 UniProtKB/TrEMBL
  ENSSTOT00000039082.1 UniProtKB/TrEMBL
  ENSSTOT00000041608.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DUF4655 UniProtKB/TrEMBL
  G_SEPTIN_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
NCBI Gene Sept4 ENTREZGENE
PANTHER PTHR37884 UniProtKB/TrEMBL
  SEPTIN UniProtKB/TrEMBL
  SEPTIN 4 UniProtKB/TrEMBL
  SEPTIN-4 UniProtKB/TrEMBL
Pfam DUF4655 UniProtKB/TrEMBL
  Septin UniProtKB/TrEMBL
PIRSF Septin UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287D3H7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D466 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D4H7 ENTREZGENE, UniProtKB/TrEMBL
  I3N6Y8_ICTTR UniProtKB/TrEMBL
  I3N8Y6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Septin4  septin 4  CUNH17orf47  chromosome unknown C17orf47 homolog  Data merged from RGD:12620696 737654 PROVISIONAL
2019-04-09 Septin4  septin 4  Sept4    Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH17orf47  chromosome unknown C17orf47 homolog  LOC101958082  chromosome unknown open reading frame, human C17orf47  Symbol and/or name change 5135510 APPROVED