Inava (innate immunity activator) - Rat Genome Database

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Gene: Inava (innate immunity activator) Ictidomys tridecemlineatus
Analyze
Symbol: Inava
Name: innate immunity activator
RGD ID: 12611256
Description: INVOLVED IN adherens junction maintenance (inferred); innate immune response (inferred); intestinal epithelial structure maintenance (inferred); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN cytoplasm (inferred); nuclear body (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C1orf106 homolog; chromosome unknown open reading frame, human C1orf106; CUNH1orf106; LOC101978302; uncharacterized protein C1orf106 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934474,208,367 - 74,230,260 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,443,042 - 3,464,506 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,443,053 - 3,458,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Inava
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934474,208,367 - 74,230,260 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365673,443,042 - 3,464,506 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365673,443,053 - 3,458,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INAVA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381200,891,531 - 200,915,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1200,891,048 - 200,915,742 (+)EnsemblGRCh38hg38GRCh38
GRCh371200,860,659 - 200,884,870 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,127,292 - 199,151,486 (+)NCBINCBI36Build 36hg18NCBI36
Celera1173,984,710 - 174,008,910 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,027,619 - 172,051,677 (+)NCBIHuRef
CHM1_11202,283,317 - 202,307,556 (+)NCBICHM1_1
T2T-CHM13v2.01200,148,514 - 200,172,675 (+)NCBIT2T-CHM13v2.0
Inava
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391136,141,259 - 136,162,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1136,141,269 - 136,162,002 (-)EnsemblGRCm39 Ensembl
GRCm381136,213,522 - 136,234,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1136,213,531 - 136,234,264 (-)EnsemblGRCm38mm10GRCm38
MGSCv371138,110,108 - 138,130,841 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361138,029,942 - 138,050,675 (-)NCBIMGSCv36mm8
Celera1138,849,317 - 138,870,045 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.61NCBI
Inava
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81350,218,149 - 50,238,430 (-)NCBIGRCr8
mRatBN7.21347,666,446 - 47,687,383 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,666,447 - 47,686,729 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1350,274,546 - 50,294,825 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,562,632 - 51,582,913 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,829,671 - 48,849,950 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01353,088,438 - 53,108,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1353,088,439 - 53,108,713 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01358,140,416 - 58,160,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41349,249,247 - 49,269,528 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11349,264,092 - 49,283,433 (-)NCBI
Celera1347,978,818 - 47,999,085 (-)NCBICelera
Cytogenetic Map13q13NCBI
Inava
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,086,302 - 37,107,221 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,086,302 - 37,107,221 (+)NCBIChiLan1.0ChiLan1.0
INAVA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2148,464,511 - 48,489,140 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1148,428,147 - 48,452,736 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01176,491,264 - 176,514,719 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11180,794,226 - 180,818,853 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1180,794,646 - 180,818,853 (+)Ensemblpanpan1.1panPan2
INAVA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.172,264,120 - 2,284,196 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,948,513 - 1,965,102 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,910,825 - 1,927,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,910,823 - 1,930,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,894,081 - 1,910,717 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,996,706 - 2,013,264 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.072,026,588 - 2,043,253 (-)NCBIUU_Cfam_GSD_1.0
INAVA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,392,099 - 23,412,712 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,392,202 - 23,414,318 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
INAVA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12528,488,990 - 28,513,997 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2528,488,901 - 28,509,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605529,288,593 - 29,313,048 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Inava
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248079,718,307 - 9,738,148 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248079,718,307 - 9,738,282 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000029131   ⟹   ENSSTOP00000015632
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365673,444,415 - 3,464,506 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000033117   ⟹   ENSSTOP00000030350
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365673,443,042 - 3,460,982 (-)Ensembl
RefSeq Acc Id: XM_021729884   ⟹   XP_021585559
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934474,208,367 - 74,225,611 (-)NCBI
SpeTri2.0NW_0049365673,443,053 - 3,458,184 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277614   ⟹   XP_040133548
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934474,208,367 - 74,230,260 (-)NCBI
RefSeq Acc Id: XM_040277615   ⟹   XP_040133549
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934474,208,367 - 74,227,125 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021585559 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133548 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133549 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015632.1
  ENSSTOP00000030350.1
GenBank Protein KAG3258440 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021585559   ⟸   XM_021729884
- Peptide Label: isoform X2
- UniProtKB: I3MU37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133548   ⟸   XM_040277614
- Peptide Label: isoform X1
- UniProtKB: I3MU37 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040133549   ⟸   XM_040277615
- Peptide Label: isoform X3
- UniProtKB: I3MU37 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000030350   ⟸   ENSSTOT00000033117
Ensembl Acc Id: ENSSTOP00000015632   ⟸   ENSSTOT00000029131

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026808 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029131.2 UniProtKB/TrEMBL
  ENSSTOT00000033117.1 UniProtKB/TrEMBL
InterPro CCDC120/INAVA UniProtKB/TrEMBL
  DUF3338 UniProtKB/TrEMBL
NCBI Gene LOC101978302 ENTREZGENE
PANTHER PTHR16093 UniProtKB/TrEMBL
  PTHR16093:SF4 UniProtKB/TrEMBL
Pfam CUPID UniProtKB/TrEMBL
UniProt A0A287D9W5_ICTTR UniProtKB/TrEMBL
  I3MU37 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-20 Inava  innate immunity activator  CUNH1orf106  chromosome unknown C1orf106 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH1orf106  chromosome unknown C1orf106 homolog  LOC101978302  chromosome unknown open reading frame, human C1orf106  Symbol and/or name change 5135510 APPROVED