Taf1b (TATA-box binding protein associated factor, RNA polymerase I subunit B) - Rat Genome Database

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Gene: Taf1b (TATA-box binding protein associated factor, RNA polymerase I subunit B) Ictidomys tridecemlineatus
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Symbol: Taf1b
Name: TATA-box binding protein associated factor, RNA polymerase I subunit B
RGD ID: 12610294
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); RNA polymerase I core promoter sequence-specific DNA binding (inferred); INVOLVED IN nucleolar large rRNA transcription by RNA polymerase I (inferred); RNA polymerase I preinitiation complex assembly (inferred); transcription by RNA polymerase I (inferred); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Lynch syndrome (ortholog); mismatch repair cancer syndrome (ortholog); orofacial cleft 1 (ortholog); FOUND IN nucleolus (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA box-binding protein-associated factor RNA polymerase I subunit B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,363,192 - 51,438,879 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,117,864 - 6,184,138 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,118,241 - 6,194,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Taf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,363,192 - 51,438,879 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,117,864 - 6,184,138 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,118,241 - 6,194,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3829,843,442 - 9,934,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl29,843,443 - 9,934,416 (+)EnsemblGRCh38hg38GRCh38
GRCh3729,983,571 - 10,074,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3629,901,024 - 9,991,996 (+)NCBINCBI36Build 36hg18NCBI36
Build 3429,934,170 - 10,025,141NCBI
Celera29,899,495 - 9,990,471 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef29,834,383 - 9,925,321 (+)NCBIHuRef
CHM1_129,913,254 - 10,004,217 (+)NCBICHM1_1
T2T-CHM13v2.029,871,368 - 9,962,349 (+)NCBIT2T-CHM13v2.0
Taf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391224,548,580 - 24,608,570 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1224,548,358 - 24,608,538 (+)EnsemblGRCm39 Ensembl
GRCm381224,498,581 - 24,558,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,498,359 - 24,558,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv371225,183,446 - 25,243,436 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361225,087,711 - 25,147,443 (+)NCBIMGSCv36mm8
Celera1225,959,782 - 26,020,670 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.49NCBI
Taf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,845,571 - 46,923,209 (+)NCBIGRCr8
mRatBN7.2641,116,980 - 41,194,593 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,117,420 - 41,194,593 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,440,776 - 41,517,176 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,755,582 - 41,831,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,188,727 - 41,265,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,644,931 - 43,722,124 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,644,830 - 43,722,113 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,512,955 - 60,590,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,127,301 - 42,204,465 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera640,405,142 - 40,482,218 (+)NCBICelera
Cytogenetic Map6q16NCBI
Taf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,359,112 - 5,394,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,359,132 - 5,394,564 (+)NCBIChiLan1.0ChiLan1.0
TAF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212116,589,416 - 116,683,282 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A116,593,387 - 116,686,114 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A9,834,385 - 9,927,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A9,995,957 - 10,088,165 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A9,996,146 - 10,087,740 (+)Ensemblpanpan1.1panPan2
TAF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1176,873,275 - 6,940,432 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl176,873,360 - 6,937,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,801,050 - 6,867,928 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0176,972,357 - 7,039,074 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,972,386 - 7,039,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1176,864,428 - 6,931,100 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0176,866,606 - 6,933,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,880,635 - 6,947,316 (+)NCBIUU_Cfam_GSD_1.0
TAF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,527,385 - 126,586,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,527,381 - 126,586,403 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,954,600 - 135,003,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11497,704,251 - 97,787,738 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1497,704,187 - 97,787,639 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604514,527,198 - 14,612,118 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248655,088,926 - 5,128,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248655,089,425 - 5,128,228 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000002423   ⟹   ENSSTOP00000002168
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365326,117,864 - 6,184,138 (+)Ensembl
RefSeq Acc Id: XM_040271271   ⟹   XP_040127205
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629251,363,192 - 51,438,879 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040127205 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002168.3
RefSeq Acc Id: XP_040127205   ⟸   XM_040271271
Ensembl Acc Id: ENSSTOP00000002168   ⟸   ENSSTOT00000002423
Protein Domains
RRN7-type   Rrn7/TAF1B C-terminal cyclin   Rrn7/TAF1B N-terminal cyclin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002419 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002423.3 UniProtKB/TrEMBL
InterPro Rrn7_cyclin_C UniProtKB/TrEMBL
  Rrn7_cyclin_N UniProtKB/TrEMBL
  TAF1B/Rrn7 UniProtKB/TrEMBL
  TF_Rrn7_Zf UniProtKB/TrEMBL
NCBI Gene Taf1b ENTREZGENE
PANTHER PTHR31576 UniProtKB/TrEMBL
  TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B UniProtKB/TrEMBL
Pfam Rrn7_cyclin_C UniProtKB/TrEMBL
  Rrn7_cyclin_N UniProtKB/TrEMBL
  zf-RRN7 UniProtKB/TrEMBL
UniProt I3M0E1_ICTTR UniProtKB/TrEMBL