Symbol:
Chmp4b
Name:
charged multivesicular body protein 4B
RGD ID:
12606255
Description:
ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); exit from mitosis (ortholog); ASSOCIATED WITH cataract 31 multiple types (ortholog); glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); FOUND IN amphisome membrane (ortholog); autophagosome membrane (ortholog); cytoplasm (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024408640 171,950,653 - 171,993,189 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936561 6,756,307 - 6,799,290 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936561 6,756,360 - 6,798,964 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Chmp4b Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024408640 171,950,653 - 171,993,189 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936561 6,756,307 - 6,799,290 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936561 6,756,360 - 6,798,964 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CHMP4B Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 20 33,811,348 - 33,854,366 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 20 33,811,348 - 33,854,366 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 20 32,399,154 - 32,442,172 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 20 31,862,780 - 31,905,831 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 20 31,862,779 - 31,905,830 NCBI Celera 20 29,151,820 - 29,194,895 (+) NCBI Celera Cytogenetic Map 20 q11.22 NCBI HuRef 20 29,183,904 - 29,227,019 (+) NCBI HuRef CHM1_1 20 32,300,438 - 32,343,523 (+) NCBI CHM1_1 T2T-CHM13v2.0 20 35,537,705 - 35,580,724 (+) NCBI T2T-CHM13v2.0
Chmp4b Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 2 154,498,949 - 154,536,703 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 2 154,493,625 - 154,536,705 (+) Ensembl GRCm39 Ensembl GRCm38 2 154,657,026 - 154,694,783 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 2 154,651,705 - 154,694,785 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 2 154,482,762 - 154,520,519 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 2 154,348,505 - 154,386,224 (+) NCBI MGSCv36 mm8 Celera 2 160,576,332 - 160,622,337 (+) NCBI Celera Cytogenetic Map 2 H1 NCBI cM Map 2 76.79 NCBI
Chmp4b Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 3 163,631,054 - 163,671,569 (+) NCBI GRCr8 mRatBN7.2 3 143,170,859 - 143,211,376 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 3 143,170,902 - 143,210,844 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 3 147,038,366 - 147,078,867 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 3 155,655,650 - 155,696,272 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 3 153,395,185 - 153,435,681 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 3 150,188,275 - 150,227,453 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 150,188,455 - 150,227,405 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 3 156,559,302 - 156,597,243 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 3 145,138,905 - 145,176,471 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 3 141,903,054 - 141,940,133 (+) NCBI Celera Cytogenetic Map 3 q41 NCBI
Chmp4b Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955422 27,478,698 - 27,526,575 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955422 27,482,239 - 27,526,798 (-) NCBI ChiLan1.0 ChiLan1.0
CHMP4B Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 21 39,502,509 - 39,550,279 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 20 39,495,614 - 39,543,383 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 20 30,098,796 - 30,146,347 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 20 31,237,881 - 31,286,065 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 20 31,236,778 - 31,285,264 (+) Ensembl panpan1.1 panPan2
CHMP4B Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 24 22,995,677 - 23,050,084 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 24 22,995,672 - 23,049,287 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 24 22,640,928 - 22,694,729 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 24 23,682,594 - 23,736,450 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 24 23,682,589 - 23,736,528 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 24 22,975,014 - 23,028,808 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 24 23,068,398 - 23,122,183 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 24 23,505,889 - 23,559,706 (+) NCBI UU_Cfam_GSD_1.0
CHMP4B Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 17 37,285,442 - 37,334,101 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 17 37,285,422 - 37,334,103 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 17 42,214,644 - 42,263,471 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CHMP4B Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 2 38,093,909 - 38,139,932 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 2 38,093,829 - 38,140,367 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666050 88,741,182 - 88,785,653 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Chmp4b
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000005236 ⟹ ENSSTOP00000004698
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936561 6,756,307 - 6,799,290 (-) Ensembl
RefSeq Acc Id:
XM_005329919 ⟹ XP_005329976
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024408640 171,950,653 - 171,993,189 (+) NCBI SpeTri2.0 NW_004936561 6,756,360 - 6,798,964 (-) NCBI
Sequence:
CTGACGCCGGCCGGGCCGGGCGTGGGGGCCTGTGGGAGGTGGCGCGGCCGGGCCCAGCTGCGGGGCGGAGGCGGAGGAGAGGCCTGCGGCGGCAGGGAGCGGCGGGGCCGGGAGCGGGCGCCGGAGCC
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RefSeq Acc Id:
XP_005329976 ⟸ XM_005329919
- UniProtKB:
I3M5Q5 (UniProtKB/TrEMBL)
- Sequence:
MSVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKV
hide sequence
Ensembl Acc Id:
ENSSTOP00000004698 ⟸ ENSSTOT00000005236
