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Gene: Mindy3 (MINDY lysine 48 deubiquitinase 3) Ictidomys tridecemlineatus

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Symbol:

Mindy3

Name:

MINDY lysine 48 deubiquitinase 3

RGD ID:

12603703

Description:

ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type peptidase activity (inferred); hydrolase activity (inferred); INVOLVED IN protein K48-linked deubiquitination (inferred); proteolysis (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN nuclear membrane (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam188a; family with sequence similarity 188 member A; MINDY lysine 48 deubiquitinase 3, transcript variant X1; MINDY lysine 48 deubiquitinase 3, transcript variant X2; MINDY lysine 48 deubiquitinase 3, transcript variant X3; ubiquitin carboxyl-terminal hydrolase MINDY-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	16,705,922 - 16,796,909 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936574	6,205,442 - 6,296,345 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936574	6,205,419 - 6,296,385 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Squirrel	hypoparathyroidism-deafness-renal disease syndrome		ISO	RGD:1320032	8554872	ClinVar Annotator: match by term: Hypoparathyroidism, deafness, renal disease syndrome	ClinVar	PMID:25741868

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Squirrel	Experimental Liver Cirrhosis		ISO	RGD:1320032	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:25380136

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Squirrel	protein K48-linked deubiquitination	involved_in	IEA	InterPro:IPR039785	150520179		InterPro	GO_REF:0000002
Mindy3	Squirrel	proteolysis	involved_in	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Squirrel	nuclear membrane	located_in	IEA	UniProtKB:Q9H8M7\|ensembl:ENSP00000277632	150520179		Ensembl	GO_REF:0000107
Mindy3	Squirrel	nucleoplasm	located_in	IEA	UniProtKB:Q9H8M7\|ensembl:ENSP00000277632	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mindy3	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	EC:3.4.19.12	150520179		UniProt	GO_REF:0000003
Mindy3	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	InterPro:IPR039785	150520179		InterPro	GO_REF:0000002
Mindy3	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	UniProtKB:Q9H8M7\|ensembl:ENSP00000277632	150520179		Ensembl	GO_REF:0000107
Mindy3	Squirrel	cysteine-type deubiquitinase activity	enables	IEA	UniRule:UR001419755	150520179		UniProt	GO_REF:0000104
Mindy3	Squirrel	cysteine-type peptidase activity	enables	IEA	UniProtKB-KW:KW-0788	150520179		UniProt	GO_REF:0000043
Mindy3	Squirrel	hydrolase activity	enables	IEA	UniProtKB-KW:KW-0378	150520179		UniProt	GO_REF:0000043
Mindy3	Squirrel	K48-linked deubiquitinase activity	enables	IEA	UniProtKB:Q9H8M7\|ensembl:ENSP00000277632	150520179		Ensembl	GO_REF:0000107
Mindy3	Squirrel	K48-linked deubiquitinase activity	enables	IEA	PANTHER:PTN000279924	150520179		TreeGrafter	GO_REF:0000118
Mindy3	Squirrel	K48-linked deubiquitinase activity	enables	IEA	InterPro:IPR039785	150520179		InterPro	GO_REF:0000002
Mindy3	Squirrel	K48-linked deubiquitinase activity	enables	IEA	UniRule:UR001419755	150520179		UniProt	GO_REF:0000104
Mindy3	Squirrel	peptidase activity	enables	IEA	UniProtKB-KW:KW-0645	150520179		UniProt	GO_REF:0000043
Mindy3	Squirrel	protein binding	enables	ISO	UniProtKB:Q92905	9068941	PMID:21499297	IntAct	PMID:21499297
Mindy3	Squirrel	protein binding	enables	ISO	UniProtKB:P54725	9068941	PMID:25416956, PMID:31515488	IntAct	PMID:25416956\|PMID:31515488
Mindy3	Squirrel	protein binding	enables	ISO	UniProtKB:O00560\|UniProtKB:P0CI25\|UniProtKB:P0CI26\|UniProtKB:P54725\|UniProtKB:Q15038	9068941	PMID:32296183	IntAct	PMID:32296183
Mindy3	Squirrel	protein binding	enables	ISO	UniProtKB:P0CI25	9068941	PMID:28514442, PMID:33961781	IntAct	PMID:28514442\|PMID:33961781

PMID:30032202

Mindy3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	16,705,922 - 16,796,909 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936574	6,205,442 - 6,296,345 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936574	6,205,419 - 6,296,385 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MINDY3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	15,778,174 - 15,860,507 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	15,778,170 - 15,860,507 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	15,820,173 - 15,902,506 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	15,860,181 - 15,942,525 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	15,860,180 - 15,942,525	NCBI
Celera	10	15,753,418 - 15,835,764 (-)	NCBI		Celera
Cytogenetic Map	10	p13	NCBI
HuRef	10	15,732,561 - 15,814,922 (-)	NCBI		HuRef
CHM1_1	10	15,820,225 - 15,902,566 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	15,796,178 - 15,878,518 (-)	NCBI		T2T-CHM13v2.0

Mindy3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	12,352,074 - 12,424,298 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	12,352,074 - 12,424,281 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	12,347,263 - 12,419,489 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	12,347,263 - 12,419,470 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	12,268,891 - 12,341,087 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	12,265,117 - 12,337,313 (-)	NCBI		MGSCv36	mm8
Celera	2	12,260,745 - 12,332,603 (-)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	9.27	NCBI

Mindy3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	80,454,404 - 80,532,999 (-)	NCBI		GRCr8
mRatBN7.2	17	75,545,286 - 75,623,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	75,545,286 - 75,623,854 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	79,004,991 - 79,083,646 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	82,840,328 - 82,918,988 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	76,888,261 - 76,966,923 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	79,720,534 - 79,798,470 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	79,720,535 - 79,798,435 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	81,348,947 - 81,426,343 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	86,693,496 - 86,771,915 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	86,713,857 - 86,956,893 (-)	NCBI
Celera	17	74,921,510 - 74,998,724 (-)	NCBI		Celera
Cytogenetic Map	17	q12.3	NCBI

Mindy3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	11,805,080 - 11,890,103 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	11,805,205 - 11,890,103 (+)	NCBI	ChiLan1.0	ChiLan1.0

MINDY3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	28,627,068 - 28,709,225 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	28,632,395 - 28,714,551 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	16,101,605 - 16,183,746 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	16,377,064 - 16,459,134 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	16,377,064 - 16,459,135 (-)	Ensembl	panpan1.1		panPan2

MINDY3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	20,948,946 - 21,014,938 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	20,865,946 - 21,014,429 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	18,041,164 - 18,125,213 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	21,223,797 - 21,307,880 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	21,223,812 - 21,307,880 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	18,430,539 - 18,514,602 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	19,264,996 - 19,349,027 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	19,890,285 - 19,974,351 (+)	NCBI		UU_Cfam_GSD_1.0

MINDY3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	45,980,111 - 46,062,700 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	45,980,088 - 46,062,700 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	50,676,092 - 50,758,110 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MINDY3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	15,738,104 - 15,820,935 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	15,737,625 - 15,820,266 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	21,328,221 - 21,410,447 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mindy3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624796	11,778,201 - 11,863,318 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624796	11,778,932 - 11,862,882 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005330866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040276772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005730330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000006967 ⟹ ENSSTOP00000006227

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936574	6,205,442 - 6,296,345 (-)	Ensembl

RefSeq Acc Id:

XM_005330866 ⟹ XP_005330923

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	16,705,922 - 16,796,907 (-)	NCBI
SpeTri2.0	NW_004936574	6,205,419 - 6,296,385 (-)	NCBI

Sequence:

show sequence

AGCCGGAAGCGGCCGCACTTCCGGTACGGAAAACTCTCAGCTGCGGCTCTGACCCGGCTTGACAGGCGCGGTCCCTGCAAGTAGCGCTGCCGCCTTTCACCTCTCTGCTGTCTAACCTTCAAGCTCGT
TTGCCGTCCCGAAGCTCCTTGTCTTCGAAGTCGCCCCTTCCCTATGTTCCGGGGCAGGAGTCCTGTAAGCAAAGATCCGCCCGCCGGTACCCCATCATGTCCGAACTGACTAAAGAGCTGATGGAGCT
GGTGTGGGGCACCAAGAGCAGCCCCGGTCTCTCTGATACCATCTTCTGCCGCTGGACGCAAGGGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTTA
TTGCACCCGTTCAGGCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCTGAGAAGTCATCTTGGCGGAATTGCTCAGAGGACGAGCAGAAGGAACTTCTTTGTCATACCTTATGTGATATTTTAGAAAGT
GCTTGTTGTGACAACTCTGGATCATACTGCTTGGTTTCATGGTTAAGAGGAAGGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCAGAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTT
GGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAAGTTTATCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTAT
TGCTTTTTCTGTATTCTGTGTTACTGACAAAGGGCATTGAAAATATAAAAAACGAAATTGAAGATGCAAGTGAACCTTTAATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAACCTCCTA
CTGACGGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAATGCTCAGGAATGCAACTTCTTGGTATACATGAGCAAGCAGCTGTAGGATTCTTAACATTAATGGAAGCTTTAAGATATTGTAA
GGTTGGTTCTTACTTGAAATCTCCAAAATTTCCTATTTGGATTGTTGGCAGTGAAACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGCTCCTGAAGCTCCTTCAGAACAAGCCAGGA
GAGTTTTTCAAACCTATGATCCAGAAGATAATGGATTCATAGCTGATTCACTTCTAGAAGACGTAATGAAAGCATTGGACCTTGTTTCAGATCCTGAATATATAAATCTCATGAAGAATAAATTAGAT
CCAGAAGGATTAGGAATCATATTGTTGGGTCCATTTCTTCAAGAATTTTTTCCTGATCAGGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAATCAAATTATAATGA
AAAGGTAATGTATGTAGAAGGAACTGCAGTCATTATGGGTTTTGAAGATCCCATGCTACAAACAGATGACACACCTATTAAACGCTGTCTCCAAACCAAATGGCCATACATTGAGTTACTCTGGACCA
CAGATCGCTCTCCTTCACTAAACTGATTTCCCTAAGTATTTGTAAGGAAGATTGTAATAACAGATGTTGATAGAGGGATTTATGACTGGCAATTGGCTAAACACTGGTATCATTGATTAACTGTAAAT
AACAATTAAAAACACATTTTTGTGTTTAAGATGTTTTATTATTTGGTTTAAAGGTTTACCTTAAAGCTTATCCTATTTTAACCCTTTGTGTTGAAATTTACTAGCAAAATTAAGCTTTAATCAAAGTT
CATCACTTTTGCAATAAGATAAGTATCAAAATCACTATGTATAAACTTTTGGGTTTTATTTCATTCAGCCACATTTTATCGTTTGATTGATTCTGGCTTATATATCAGCTTCCACACTGAAATGCAGA
AATTAATTTTTTTCTTTTTGAAAATCTTTTCCATGAGAAATTCTGATAAATAACAATTTATCAGTCCAGATCCTTTGATAATTGTCTTAACTCTGGCATGTTTACAAAATGTAGAAACTATCTGAAAA
CTTCCCACTTATTCACAGGTGTCTAGGGGATGTATTTTTTAAACTGATAGAAAAGAGAATGTTTGATAGTCTTAACACTGTTAACTTTCACTGTGTTGCCAAATGCTTTTCCAAATTTGTTCCAACAG
CCCTATAAGCCAGCTTTCTTGTATATTTATAAATGTGATAAATGCATGAGAACATCTGTTACTACATTAGTATATTCCATTATTTATTATGATCCTAGTTGATAACCTAAATAAAAACTTTTTTCTTT
AACTCTA

hide sequence

RefSeq Acc Id:

XM_021730228 ⟹ XP_021585903

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	16,705,922 - 16,781,407 (-)	NCBI
SpeTri2.0	NW_004936574	6,205,419 - 6,279,763 (-)	NCBI

Sequence:

show sequence

GTTAAGAGGAAGGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCAGAGTCTAGTTGC
CAAGTGGAACATTCTTTGCTGAAAAGTGTCTTTTATGTATAGCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAAGTTTATCAGAATTAAAA
GATGCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTATTGCTTTTTCTGTATTCTGTGTTACTGACAAAGGGCATTGAAAATATAAAAAACGAAATTGAAGATGCAAGTGAACCTTT
AATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAACCTCCTACTGACGGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAATGCTCAGGAATGCAACTTCTTGGTATACATGAGC
AAGCAGCTGTAGGATTCTTAACATTAATGGAAGCTTTAAGATATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTTCCTATTTGGATTGTTGGCAGTGAAACTCACCTCACCGTATTTTTTGCC
AAGGATATGGCTTTAGTTGCTCCTGAAGCTCCTTCAGAACAAGCCAGGAGAGTTTTTCAAACCTATGATCCAGAAGATAATGGATTCATAGCTGATTCACTTCTAGAAGACGTAATGAAAGCATTGGA
CCTTGTTTCAGATCCTGAATATATAAATCTCATGAAGAATAAATTAGATCCAGAAGGATTAGGAATCATATTGTTGGGTCCATTTCTTCAAGAATTTTTTCCTGATCAGGGCTCCAGTGGTCCAGAAT
CTTTTACTGTCTACCACTACAATGGATTGAAGCAATCAAATTATAATGAAAAGGTAATGTATGTAGAAGGAACTGCAGTCATTATGGGTTTTGAAGATCCCATGCTACAAACAGATGACACACCTATT
AAACGCTGTCTCCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAACTGATTTCCCTAAGTATTTGTAAGGAAGATTGTAATAACAGATGTTGATAGAGGGAT
TTATGACTGGCAATTGGCTAAACACTGGTATCATTGATTAACTGTAAATAACAATTAAAAACACATTTTTGTGTTTAAGATGTTTTATTATTTGGTTTAAAGGTTTACCTTAAAGCTTATCCTATTTT
AACCCTTTGTGTTGAAATTTACTAGCAAAATTAAGCTTTAATCAAAGTTCATCACTTTTGCAATAAGATAAGTATCAAAATCACTATGTATAAACTTTTGGGTTTTATTTCATTCAGCCACATTTTAT
CGTTTGATTGATTCTGGCTTATATATCAGCTTCCACACTGAAATGCAGAAATTAATTTTTTTCTTTTTGAAAATCTTTTCCATGAGAAATTCTGATAAATAACAATTTATCAGTCCAGATCCTTTGAT
AATTGTCTTAACTCTGGCATGTTTACAAAATGTAGAAACTATCTGAAAACTTCCCACTTATTCACAGGTGTCTAGGGGATGTATTTTTTAAACTGATAGAAAAGAGAATGTTTGATAGTCTTAACACT
GTTAACTTTCACTGTGTTGCCAAATGCTTTTCCAAATTTGTTCCAACAGCCCTATAAGCCAGCTTTCTTGTATATTTATAAATGTGATAAATGCATGAGAACATCTGTTACTACATTAGTATATTCCA
TTATTTATTATGATCCTAGTTGATAACCTAAATAAAAACTTTTTTCTTTAACTCTA

hide sequence

RefSeq Acc Id:

XM_021730229 ⟹ XP_021585904

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	16,705,922 - 16,781,407 (-)	NCBI
SpeTri2.0	NW_004936574	6,205,419 - 6,280,940 (-)	NCBI

Sequence:

show sequence

AGATCTTTCCTTCATTTACACAATTTCATGTGAACCTCACAATAACATCTGGAGAAGAGGACGA
GCAGAAGGAACTTCTTTGTCATACCTTATGTGATATTTTAGAAAGTGCTTGTTGTGACAACTCTGGATCATACTGCTTGGTTTCATGGTTAAGAGGAAGGACAACTGAGGAAACTGCTAGTATTTCTG
GGAGTCCTGCAGAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCATTCAGAAGTTTATCAGAATTAAAAGAT
GCTGTCTTGGACCAGTATTCAATGTGGGGAAACAAATTTGGAGTATTGCTTTTTCTGTATTCTGTGTTACTGACAAAGGGCATTGAAAATATAAAAAACGAAATTGAAGATGCAAGTGAACCTTTAAT
AGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAACCTCCTACTGACGGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAATGCTCAGGAATGCAACTTCTTGGTATACATGAGCAAG
CAGCTGTAGGATTCTTAACATTAATGGAAGCTTTAAGATATTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTTCCTATTTGGATTGTTGGCAGTGAAACTCACCTCACCGTATTTTTTGCCAAG
GATATGGCTTTAGTTGCTCCTGAAGCTCCTTCAGAACAAGCCAGGAGAGTTTTTCAAACCTATGATCCAGAAGATAATGGATTCATAGCTGATTCACTTCTAGAAGACGTAATGAAAGCATTGGACCT
TGTTTCAGATCCTGAATATATAAATCTCATGAAGAATAAATTAGATCCAGAAGGATTAGGAATCATATTGTTGGGTCCATTTCTTCAAGAATTTTTTCCTGATCAGGGCTCCAGTGGTCCAGAATCTT
TTACTGTCTACCACTACAATGGATTGAAGCAATCAAATTATAATGAAAAGGTAATGTATGTAGAAGGAACTGCAGTCATTATGGGTTTTGAAGATCCCATGCTACAAACAGATGACACACCTATTAAA
CGCTGTCTCCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAACTGATTTCCCTAAGTATTTGTAAGGAAGATTGTAATAACAGATGTTGATAGAGGGATTTA
TGACTGGCAATTGGCTAAACACTGGTATCATTGATTAACTGTAAATAACAATTAAAAACACATTTTTGTGTTTAAGATGTTTTATTATTTGGTTTAAAGGTTTACCTTAAAGCTTATCCTATTTTAAC
CCTTTGTGTTGAAATTTACTAGCAAAATTAAGCTTTAATCAAAGTTCATCACTTTTGCAATAAGATAAGTATCAAAATCACTATGTATAAACTTTTGGGTTTTATTTCATTCAGCCACATTTTATCGT
TTGATTGATTCTGGCTTATATATCAGCTTCCACACTGAAATGCAGAAATTAATTTTTTTCTTTTTGAAAATCTTTTCCATGAGAAATTCTGATAAATAACAATTTATCAGTCCAGATCCTTTGATAAT
TGTCTTAACTCTGGCATGTTTACAAAATGTAGAAACTATCTGAAAACTTCCCACTTATTCACAGGTGTCTAGGGGATGTATTTTTTAAACTGATAGAAAAGAGAATGTTTGATAGTCTTAACACTGTT
AACTTTCACTGTGTTGCCAAATGCTTTTCCAAATTTGTTCCAACAGCCCTATAAGCCAGCTTTCTTGTATATTTATAAATGTGATAAATGCATGAGAACATCTGTTACTACATTAGTATATTCCATTA
TTTATTATGATCCTAGTTGATAACCTAAATAAAAACTTTTTTCTTTAACTCTA

hide sequence

RefSeq Acc Id:

XM_040276771 ⟹ XP_040132705

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	16,705,922 - 16,796,906 (-)	NCBI

RefSeq Acc Id:

XM_040276772 ⟹ XP_040132706

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	16,705,922 - 16,781,408 (-)	NCBI

RefSeq Acc Id:

XR_005730330

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	16,706,684 - 16,796,909 (-)	NCBI


Protein RefSeqs	XP_005330923	(Get FASTA)	NCBI Sequence Viewer
	XP_021585903	(Get FASTA)	NCBI Sequence Viewer
	XP_021585904	(Get FASTA)	NCBI Sequence Viewer
	XP_040132705	(Get FASTA)	NCBI Sequence Viewer
	XP_040132706	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006227.3
GenBank Protein	KAG3257549	(Get FASTA)	NCBI Sequence Viewer
	KAG3257550	(Get FASTA)	NCBI Sequence Viewer
	KAG3257551	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330923 ⟸ XM_005330866
- Peptide Label:	isoform X1
- UniProtKB:	I3M8V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRNCSEDEQKELLCHTLCDILESACCDNSGSYCLVSWLRGRTTEETASISGSPAE SSCQVEHSSALAVEELGFERFHALIQKRSFRSLSELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQAAVGF LTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFIADSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYH YNGLKQSNYNEKVMYVEGTAVIMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN hide sequence

RefSeq Acc Id:

XP_021585904 ⟸ XM_021730229

- Peptide Label:

isoform X3

- Sequence:

show sequence

MWGNKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGD
RECSGMQLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFIADSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFL
QEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVIMGFEDPMLQTDDTPIKRCLQTKWPYIELLWTTDRSPSLN

hide sequence

RefSeq Acc Id:

XP_021585903 ⟸ XM_021730228

- Peptide Label:

isoform X3

- Sequence:

show sequence

MWGNKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMQLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAP
EAPSEQARRVFQTYDPEDNGFIADSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQGSSGPESFTVYHYNGLKQSNYNEKVMYVEGTAVIMGFEDPMLQTDDTPIKRCLQTKW
PYIELLWTTDRSPSLN

hide sequence

RefSeq Acc Id:	XP_040132705 ⟸ XM_040276771
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040132706 ⟸ XM_040276772
- Peptide Label:	isoform X3

Protein Domains

Deubiquitinating enzyme MINDY-3/4 conserved

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006969	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006967.3	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	MINDY-3/4_CD	UniProtKB/TrEMBL
	MINY3/4	UniProtKB/TrEMBL
NCBI Gene	Fam188a	ENTREZGENE
PANTHER	PTHR12473	UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY-3	UniProtKB/TrEMBL
Pfam	DUF4205	UniProtKB/TrEMBL
SMART	DUF4205	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	I3M8V8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-02-07	Mindy3	MINDY lysine 48 deubiquitinase 3	Fam188a	family with sequence similarity 188 member A	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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