Baz1a (bromodomain adjacent to zinc finger domain 1A) - Rat Genome Database

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Gene: Baz1a (bromodomain adjacent to zinc finger domain 1A) Ictidomys tridecemlineatus
Analyze
Symbol: Baz1a
Name: bromodomain adjacent to zinc finger domain 1A
RGD ID: 12596895
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); INVOLVED IN chromatin remodeling (inferred); DNA-templated DNA replication (inferred); nucleosome assembly (inferred); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); ectodermal dysplasia and immunodeficiency 2 (ortholog); genetic disease (ortholog); FOUND IN ACF complex (ortholog); pericentric heterochromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bromodomain adjacent to zinc finger domain 1A, transcript variant X1; bromodomain adjacent to zinc finger domain 1A, transcript variant X2; bromodomain adjacent to zinc finger domain protein 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864045,462,807 - 45,574,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364948,968,704 - 9,080,620 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364948,968,704 - 9,080,620 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Baz1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864045,462,807 - 45,574,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364948,968,704 - 9,080,620 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364948,968,704 - 9,080,620 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAZ1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381434,752,731 - 34,875,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1434,752,731 - 34,875,647 (-)EnsemblGRCh38hg38GRCh38
GRCh371435,221,937 - 35,344,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361434,291,688 - 34,414,604 (-)NCBINCBI36Build 36hg18NCBI36
Build 341434,291,689 - 34,414,604NCBI
Celera1415,086,104 - 15,209,015 (-)NCBICelera
Cytogenetic Map14q13.1-q13.2NCBI
HuRef1415,335,300 - 15,458,090 (-)NCBIHuRef
CHM1_11435,220,660 - 35,343,450 (-)NCBICHM1_1
T2T-CHM13v2.01428,951,901 - 29,074,526 (-)NCBIT2T-CHM13v2.0
Baz1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391254,939,774 - 55,061,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1254,940,336 - 55,061,133 (-)EnsemblGRCm39 Ensembl
GRCm381254,892,989 - 55,014,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1254,892,989 - 55,014,348 (-)EnsemblGRCm38mm10GRCm38
MGSCv371255,993,976 - 56,087,323 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361255,811,119 - 55,908,939 (-)NCBIMGSCv36mm8
Celera1256,156,553 - 56,280,462 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1223.84NCBI
Baz1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8678,124,872 - 78,247,672 (-)NCBIGRCr8
mRatBN7.2672,389,701 - 72,512,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx672,811,116 - 72,904,088 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,117,795 - 73,210,436 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0672,546,804 - 72,639,764 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0675,793,223 - 75,873,854 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0685,333,774 - 85,412,648 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4675,239,089 - 75,327,488 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1675,242,512 - 75,336,984 (-)NCBI
Celera671,233,873 - 71,314,047 (-)NCBICelera
Cytogenetic Map6q23NCBI
Baz1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540926,149,665 - 26,231,180 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540926,136,961 - 26,231,960 (+)NCBIChiLan1.0ChiLan1.0
BAZ1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21536,070,705 - 36,293,764 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11435,287,205 - 35,407,864 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01415,510,881 - 15,632,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11433,698,645 - 33,813,281 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1433,699,424 - 33,804,473 (-)Ensemblpanpan1.1panPan2
BAZ1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1813,604,694 - 13,694,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl813,605,182 - 13,693,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha813,402,475 - 13,491,737 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0813,712,075 - 13,801,686 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl813,712,076 - 13,801,192 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1813,412,851 - 13,502,472 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0813,478,243 - 13,567,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0813,767,640 - 13,857,159 (-)NCBIUU_Cfam_GSD_1.0
BAZ1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,969,640 - 65,069,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1764,969,626 - 65,069,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,799,806 - 69,899,460 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BAZ1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12411,580,379 - 11,708,320 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2411,581,164 - 11,706,292 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666053533,277 - 662,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Baz1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248381,908,527 - 2,007,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248381,907,825 - 2,007,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000012214   ⟹   ENSSTOP00000010948
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364948,968,704 - 9,080,620 (-)Ensembl
RefSeq Acc Id: XM_005322674   ⟹   XP_005322731
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,462,807 - 45,574,438 (-)NCBI
SpeTri2.0NW_0049364948,968,704 - 9,080,620 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005322676   ⟹   XP_005322733
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,462,807 - 45,574,444 (-)NCBI
SpeTri2.0NW_0049364948,968,704 - 9,080,620 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005729191
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864045,464,424 - 45,574,383 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005322731 (Get FASTA)   NCBI Sequence Viewer  
  XP_005322733 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010948.3
GenBank Protein KAG3261076 (Get FASTA)   NCBI Sequence Viewer  
  KAG3261077 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005322733   ⟸   XM_005322676
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005322731   ⟸   XM_005322674
- Peptide Label: isoform X1
- UniProtKB: I3MIR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000010948   ⟸   ENSSTOT00000012214
Protein Domains
Bromo   DDT   PHD-type   WAC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012204 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012214.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Acf1_Bromo UniProtKB/TrEMBL
  BAZ1A UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DDT_dom UniProtKB/TrEMBL
  WHIM1_dom UniProtKB/TrEMBL
  WHIM2_dom UniProtKB/TrEMBL
  WSTF_Acf1_Cbp146 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Baz1a ENTREZGENE
PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A UniProtKB/TrEMBL
  BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  WAC_Acf1_DNA_bd UniProtKB/TrEMBL
  WHIM1 UniProtKB/TrEMBL
  WSD UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  WAC UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt I3MIR5 ENTREZGENE, UniProtKB/TrEMBL