Dnajb1 (DnaJ heat shock protein family (Hsp40) member B1)

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Gene: Dnajb1 (DnaJ heat shock protein family (Hsp40) member B1) Ictidomys tridecemlineatus

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Symbol:

Dnajb1

Name:

DnaJ heat shock protein family (Hsp40) member B1

RGD ID:

12593773

Description:

ENCODES a protein that exhibits ATPase activator activity (inferred); ATPase binding (inferred); Hsp70 protein binding (inferred); INVOLVED IN chaperone cofactor-dependent protein refolding (ortholog); forebrain development (ortholog); positive regulation of ATP-dependent activity (ortholog); PARTICIPATES IN chaperone mediated autophagy pathway; FOUND IN dendritic spine (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DnaJ heat shock protein family (Hsp40) member B1, transcript variant X1; DnaJ heat shock protein family (Hsp40) member B1, transcript variant X2; dnaJ homolog subfamily B member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	207,303,265 - 207,315,402 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	3,039,277 - 3,042,972 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	3,039,304 - 3,051,373 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to heat (IEA)

chaperone cofactor-dependent protein refolding (IEA,ISO)

forebrain development (ISO)

negative regulation of inclusion body assembly (IEA)

negative regulation of transcription by RNA polymerase II (IEA)

positive regulation of ATP-dependent activity (ISO)

protein folding (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

dendritic spine (ISO)

glutamatergic synapse (ISO)

neuronal cell body (ISO)

nucleoplasm (IEA)

postsynapse (ISO)

postsynaptic density (ISO)

sperm head (ISO)

Molecular Function

ATPase activator activity (IEA)

ATPase binding (IEA)

Hsp70 protein binding (IEA)

protein binding (ISO)

protein folding chaperone (IEA)

protein-folding chaperone binding (IEA)

transcription corepressor activity (IEA)

transcription regulator inhibitor activity (IEA)

unfolded protein binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

chaperone mediated autophagy pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Dnajb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	207,303,265 - 207,315,402 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	3,039,277 - 3,042,972 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	3,039,304 - 3,051,373 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	14,514,769 - 14,560,391 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	14,513,789 - 14,560,391 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	14,625,581 - 14,640,083 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	14,486,582 - 14,490,201 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	14,486,581 - 14,490,201	NCBI
Celera	19	14,519,709 - 14,523,328 (-)	NCBI		Celera
Cytogenetic Map	19	p13.12	NCBI
HuRef	19	14,195,571 - 14,199,191 (-)	NCBI		HuRef
CHM1_1	19	14,625,542 - 14,629,161 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	14,641,477 - 14,655,999 (-)	NCBI		T2T-CHM13v2.0

Dnajb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,334,804 - 84,339,282 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	84,334,822 - 84,339,282 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	83,608,175 - 83,612,653 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	83,608,193 - 83,612,653 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	86,132,074 - 86,135,802 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	86,498,298 - 86,502,008 (+)	NCBI		MGSCv36	mm8
Celera	8	87,895,947 - 87,899,699 (+)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	40.22	NCBI

Dnajb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	41,427,453 - 41,431,141 (-)	NCBI		GRCr8
mRatBN7.2	19	24,522,731 - 24,526,419 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	24,522,717 - 24,526,458 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	31,344,056 - 31,347,744 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	31,998,467 - 32,002,155 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	34,221,242 - 34,224,930 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	24,747,178 - 24,750,919 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	24,747,178 - 24,750,919 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	35,726,334 - 35,730,075 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	26,213,739 - 26,217,480 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	26,218,578 - 26,222,306 (-)	NCBI
Celera	19	24,065,512 - 24,069,253 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Dnajb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	33,098,210 - 33,103,143 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	33,098,503 - 33,102,125 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	19,444,576 - 19,448,373 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	18,446,832 - 18,450,618 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	14,078,201 - 14,081,884 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	14,921,219 - 14,926,473 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	14,922,389 - 14,926,268 (-)	Ensembl	panpan1.1		panPan2

DNAJB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	48,120,604 - 48,131,091 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	48,121,379 - 48,130,060 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	47,997,072 - 48,007,556 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	48,637,524 - 48,648,012 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	48,644,175 - 48,648,009 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	47,851,456 - 47,861,943 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	48,277,833 - 48,288,317 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	48,520,662 - 48,531,368 (+)	NCBI		UU_Cfam_GSD_1.0

DNAJB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	64,758,957 - 64,765,485 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	64,761,672 - 64,764,482 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	65,176,572 - 65,180,388 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	13,173,197 - 13,176,826 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	13,173,157 - 13,176,877 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	6,478,080 - 6,481,855 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	1,631,275 - 1,652,488 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624901	1,631,789 - 1,643,026 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005336257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040290361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000028910 ⟹ ENSSTOP00000016651

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936659	3,039,277 - 3,042,972 (-)	Ensembl

RefSeq Acc Id:

XM_005336257 ⟹ XP_005336314

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	207,311,861 - 207,315,402 (+)	NCBI
SpeTri2.0	NW_004936659	3,039,304 - 3,042,972 (-)	NCBI

Sequence:

show sequence

CGGCTTGGCCCCGCCCCGGATGTCGCGCGTCACGGACTGAGCACCGGCGATTGGCCGTCGCGGC
GCGAGGGGCGGGGCGGAAGGTTCTGGAGGGGGCTGGCGGGCTCTGGAAGCTTCCGCCGGACGGG
TATATAGAGTCCGGGACGGGGCGGCGGCGGAGCCGGGGGACGGCGACAGCTGGGCGGCGGGCCG
CAGGTGGGGGCCATGGGCAAGGACTACTATCAGACGCTGGGCCTGGCCCGCGGCGCGTCGGATG
AGGAGATCAAGCGGGCCTACCGCCGCCAGGCACTGCGCTACCACCCGGACAAGAACAAGGAGCC
CGGCGCCGAGGAGAAGTTCAAGGAGATCGCCGAGGCCTACGACGTGCTCAGCGACCCGCGCAAG
CGCGAGATCTTCGACCGCTACGGGGAGGAAGGCCTAAAGGGCGGTGGCCCCAGTGGCGGTAGCA
GCGGTGGTGCTAACGGTACCTCTTTCAGCTACACATTCCATGGAGACCCTCATGCCATGTTTGC
TGAATTCTTTGGTGGCAGAAATCCCTTTGATACCTTTTTTGGGCAGCGGAACGGAGAGGAAGGC
ATGGACATCGATGACCCATTCTCCAGTTTTCCCATGGGCATGGGTGGCTTCACCAACATGAACT
TTGGTCGCTCCCGCCCTCCCCAAGAGCCCACCCGGAAGAAGCAAGATCCCCCTGTCACCCACGA
CCTGAGGGTCTCCCTTGAAGAAATTTACAGCGGCTGTACCAAGAAGATGAAAATCTCACACAAG
CGGCTGAACCCCGATGGAAAGAGCATTCGAAACGAAGACAAAATTTTGACCATTGAAGTGAAGA
GGGGGTGGAAAGAAGGGACCAAAATCACCTTCCCCAAGGAAGGAGACCAGACCTCCAACAACAT
TCCAGCTGACATTGTCTTTGTTTTAAAGGACAAGCCACACAATATCTTTAAGAGAGATGGTTCT
GACGTCATTTATCCTGCCAGGATTACCCTTCGAGAGGCTTTGTGTGGCTGTACAGTAAACGTCC
CCACTCTGGACGGCAGGACCATACCCGTCGTATTCAAAGATGTCATCAGGCCTGGCATGCGGCG
AAAAGTTCCTGGAGAAGGCCTCCCCCTCCCCAAAACGCCGGAGAAACGCGGGGACCTCATTATC
GAGTTTGAAGTGATCTTCCCAGAAAGGATTCCCCAGACGTCAAGAACCGTACTTGAGCAGGTTC
TTCCAATATAGTCACCTGCGTTCCCCAAGGACTAACCAGGGACCTTTCCACAGCTCAAGGATTT
CCGGACCGTTCACCAGTTGTGGACAGAGAGAGGCGGGAGGGCCCAGGGAGGGCTTTCGTACTGC
TGAATGTTTTCCAGAGAATATATTACAATCTTTCAAAGTCGTGCACTAGACTTAAGTGGTTTTT
CGAGCGATAGAGCGGCAGGTGGTGGGCACAGCAGAGATGGGCATTACAGTCTGCCCTACTGGTT
CCTGCAGCCCTCCTGGGATGGGCCCACCTTCTGCTCCTCCAGTCCCTGCCCAGGGGCAAGAGAC
AGGCCCACAGCTGGACTTGATCCCTCTGTAGTCCCTTTGCTTCCTGCTGTTAGATGGTGTCAAC
CTGCCATCTTGGTCACCAGACCCTGTGCACTCCTCAGTTTGTGTTGTATGATCGGTTCGTGTTT
TATTCTGTATTTGTCTCCTACACCTTGCTTGTCCCCTGAAGAATTCTCTTTTCTCTTTGACCAT
CTCAAATTGAGAACCTAAATCAGTTCTGCAAAACTGCCTGGCTGGCACCACAGCAATACCTCGT
TCCAGCAGGACCAAGGGAGCCAGCTTTCAGGGAGTGAGTCTCGCACCCACCTCTCCCCCCAGGT
CCTAGTGGCCTGGCTGGAGCAGGGGGTCCTCCTGACCTCTGGCTCTGGTGACACTGAAAGTGCT
GATTTATGGGTCACACTCTTTTCTTTGTCCATAAAGCAATCCTTTGGCACACCTGAGGCTTAAC
CAGTGGCCCAGGTAATTTTTTTGTTTAATGGACTCTGGACTCTTCTCAAAGGGATCTGATCCCT
TTGAATTTTGCACAGCCCTAGATATAATCCCTTTTGATAAAAGGGTCTTTGCTTCTGATTACAG
GAGCACTGTGGAACGTCTGTAAATATGTTTTTATAATTCCATGTAAAGTTGGTGTGCACTCAAT
TGAAAATAGTCCACGGCAGCTGCTGCTCTCTGTACAGAGCCAAGAATCAGAAGAAACCTTGGGA
GTGGGAAAGTTGGAACAAAAAAAATGTCTGTTCTCTGGAGATCAGTCTGGTGCTCAGACCTTTA
GACTTATTGTAAGTTGCCACTGCCGACACGAGACCAAAGTGTGTGACTTGTCATTATGCAGCGT
GACAGCATTAAAGACTGATGCTAAACCTCA

hide sequence

RefSeq Acc Id:

XM_021733920 ⟹ XP_021589595

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	207,303,265 - 207,315,402 (+)	NCBI
SpeTri2.0	NW_004936659	3,039,304 - 3,051,373 (-)	NCBI

Sequence:

show sequence

CTGGGGGCGGGAGAAGTTGAGTGACAGGGAGGGCAGCGTCCACATGGCGGACGGCGCAGCTAGG
TGAATTCCAAGATCCTACCCTTGAGCCTTCATCCACTGTTGAACCAACCCTTCAGAACTCAGGC
CTGGCATCAGGGGAACAACAGGAGTCCTTACAGGCCTAAAGGGCGGTGGCCCCAGTGGCGGTAG
CAGCGGTGGTGCTAACGGTACCTCTTTCAGCTACACATTCCATGGAGACCCTCATGCCATGTTT
GCTGAATTCTTTGGTGGCAGAAATCCCTTTGATACCTTTTTTGGGCAGCGGAACGGAGAGGAAG
GCATGGACATCGATGACCCATTCTCCAGTTTTCCCATGGGCATGGGTGGCTTCACCAACATGAA
CTTTGGTCGCTCCCGCCCTCCCCAAGAGCCCACCCGGAAGAAGCAAGATCCCCCTGTCACCCAC
GACCTGAGGGTCTCCCTTGAAGAAATTTACAGCGGCTGTACCAAGAAGATGAAAATCTCACACA
AGCGGCTGAACCCCGATGGAAAGAGCATTCGAAACGAAGACAAAATTTTGACCATTGAAGTGAA
GAGGGGGTGGAAAGAAGGGACCAAAATCACCTTCCCCAAGGAAGGAGACCAGACCTCCAACAAC
ATTCCAGCTGACATTGTCTTTGTTTTAAAGGACAAGCCACACAATATCTTTAAGAGAGATGGTT
CTGACGTCATTTATCCTGCCAGGATTACCCTTCGAGAGGCTTTGTGTGGCTGTACAGTAAACGT
CCCCACTCTGGACGGCAGGACCATACCCGTCGTATTCAAAGATGTCATCAGGCCTGGCATGCGG
CGAAAAGTTCCTGGAGAAGGCCTCCCCCTCCCCAAAACGCCGGAGAAACGCGGGGACCTCATTA
TCGAGTTTGAAGTGATCTTCCCAGAAAGGATTCCCCAGACGTCAAGAACCGTACTTGAGCAGGT
TCTTCCAATATAGTCACCTGCGTTCCCCAAGGACTAACCAGGGACCTTTCCACAGCTCAAGGAT
TTCCGGACCGTTCACCAGTTGTGGACAGAGAGAGGCGGGAGGGCCCAGGGAGGGCTTTCGTACT
GCTGAATGTTTTCCAGAGAATATATTACAATCTTTCAAAGTCGTGCACTAGACTTAAGTGGTTT
TTCGAGCGATAGAGCGGCAGGTGGTGGGCACAGCAGAGATGGGCATTACAGTCTGCCCTACTGG
TTCCTGCAGCCCTCCTGGGATGGGCCCACCTTCTGCTCCTCCAGTCCCTGCCCAGGGGCAAGAG
ACAGGCCCACAGCTGGACTTGATCCCTCTGTAGTCCCTTTGCTTCCTGCTGTTAGATGGTGTCA
ACCTGCCATCTTGGTCACCAGACCCTGTGCACTCCTCAGTTTGTGTTGTATGATCGGTTCGTGT
TTTATTCTGTATTTGTCTCCTACACCTTGCTTGTCCCCTGAAGAATTCTCTTTTCTCTTTGACC
ATCTCAAATTGAGAACCTAAATCAGTTCTGCAAAACTGCCTGGCTGGCACCACAGCAATACCTC
GTTCCAGCAGGACCAAGGGAGCCAGCTTTCAGGGAGTGAGTCTCGCACCCACCTCTCCCCCCAG
GTCCTAGTGGCCTGGCTGGAGCAGGGGGTCCTCCTGACCTCTGGCTCTGGTGACACTGAAAGTG
CTGATTTATGGGTCACACTCTTTTCTTTGTCCATAAAGCAATCCTTTGGCACACCTGAGGCTTA
ACCAGTGGCCCAGGTAATTTTTTTGTTTAATGGACTCTGGACTCTTCTCAAAGGGATCTGATCC
CTTTGAATTTTGCACAGCCCTAGATATAATCCCTTTTGATAAAAGGGTCTTTGCTTCTGATTAC
AGGAGCACTGTGGAACGTCTGTAAATATGTTTTTATAATTCCATGTAAAGTTGGTGTGCACTCA
ATTGAAAATAGTCCACGGCAGCTGCTGCTCTCTGTACAGAGCCAAGAATCAGAAGAAACCTTGG
GAGTGGGAAAGTTGGAACAAAAAAAATGTCTGTTCTCTGGAGATCAGTCTGGTGCTCAGACCTT
TAGACTTATTGTAAGTTGCCACTGCCGACACGAGACCAAAGTGTGTGACTTGTCATTATGCAGC
GTGACAGCATTAAAGACTGATGCTAAACCTCA

hide sequence

RefSeq Acc Id:

XM_040290361 ⟹ XP_040146295

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	207,303,265 - 207,315,402 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005336314	(Get FASTA)	NCBI Sequence Viewer
	XP_021589595	(Get FASTA)	NCBI Sequence Viewer
	XP_040146295	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016651.1
GenBank Protein	KAG3280127	(Get FASTA)	NCBI Sequence Viewer
	KAG3280128	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005336314 ⟸ XM_005336257
- Peptide Label:	isoform X1
- UniProtKB:	I3MX06 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF DRYGEEGLKGGGPSGGSSGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNGEEGMDID DPFSSFPMGMGGFTNMNFGRSRPPQEPTRKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNP DGKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIY PARITLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEV IFPERIPQTSRTVLEQVLPI hide sequence

RefSeq Acc Id:

XP_021589595 ⟸ XM_021733920

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSSFPMGMGGFTNMNFGRSRPPQEPTRKKQDPPV
THDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKRGWKEGTKITFPKEGDQTS
NNIPADIVFVLKDKPHNIFKRDGSDVIYPARITLREALCGCTVNVPTLDGRTIPVVFKDVIRPG
MRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI

hide sequence

RefSeq Acc Id:	XP_040146295 ⟸ XM_040290361
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000016651 ⟸ ENSSTOT00000028910

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026438	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000028910.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
	Urease metallochaperone UreE, N-terminal domain	UniProtKB/TrEMBL
InterPro	DnaJ_C	UniProtKB/TrEMBL
	DnaJ_domain	UniProtKB/TrEMBL
	DnaJ_domain_CS	UniProtKB/TrEMBL
	DnaJ_subfamily_B	UniProtKB/TrEMBL
	HSP40/DnaJ_pept-bd	UniProtKB/TrEMBL
	J_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Dnajb1	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY B MEMBER 1	UniProtKB/TrEMBL
	DNAJ HOMOLOG SUBFAMILY C MEMBER	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
	DnaJ_C	UniProtKB/TrEMBL
PRINTS	JDOMAIN	UniProtKB/TrEMBL
PROSITE	DNAJ_1	UniProtKB/TrEMBL
	DNAJ_2	UniProtKB/TrEMBL
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46565	UniProtKB/TrEMBL
	SSF49493	UniProtKB/TrEMBL
UniProt	I3MX06	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations