Tmem139 (transmembrane protein 139) - Rat Genome Database

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Gene: Tmem139 (transmembrane protein 139) Ictidomys tridecemlineatus
Analyze
Symbol: Tmem139
Name: transmembrane protein 139
RGD ID: 12592409
Description: ASSOCIATED WITH Neoplasm Invasiveness (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,164,385 - 12,167,869 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527736,085 - 739,173 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527736,173 - 739,142 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Tmem139
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,164,385 - 12,167,869 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527736,085 - 739,173 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527736,173 - 739,142 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM139
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,284,899 - 143,288,049 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,279,957 - 143,288,048 (+)EnsemblGRCh38hg38GRCh38
GRCh377142,981,992 - 142,985,142 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,692,185 - 142,695,263 (+)NCBINCBI36Build 36hg18NCBI36
Celera7137,818,928 - 137,822,006 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7137,319,401 - 137,322,503 (+)NCBIHuRef
CHM1_17142,918,927 - 142,922,028 (+)NCBICHM1_1
T2T-CHM13v2.07144,640,307 - 144,643,457 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27142,384,156 - 142,387,257 (+)NCBI
Tmem139
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,238,866 - 42,241,489 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,238,893 - 42,241,489 (+)EnsemblGRCm39 Ensembl
GRCm38642,261,932 - 42,264,555 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,261,959 - 42,264,555 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,211,969 - 42,214,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,191,566 - 42,194,160 (+)NCBIMGSCv36mm8
Celera642,206,268 - 42,208,853 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.54NCBI
Tmem139
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,113,437 - 72,115,786 (+)NCBIGRCr8
mRatBN7.2471,147,072 - 71,149,151 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,146,724 - 71,167,399 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0471,648,705 - 71,651,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl471,650,575 - 71,651,438 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04136,451,731 - 136,454,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,026,809 - 70,028,734 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera466,076,637 - 66,079,793 (+)NCBICelera
Cytogenetic Map4q24NCBI
Tmem139
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494369,309 - 371,516 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494369,309 - 371,526 (-)NCBIChiLan1.0ChiLan1.0
TMEM139
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,130,699 - 180,140,945 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl7147,770,478 - 147,773,583 (+)Ensemblpanpan1.1panPan2
TMEM139
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,397,507 - 6,401,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,380,778 - 6,399,579 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha167,386,566 - 7,388,551 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0166,251,398 - 6,253,391 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,250,535 - 6,253,294 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,198,790 - 6,200,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,050,709 - 6,052,702 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,125,847 - 6,128,096 (-)NCBIUU_Cfam_GSD_1.0
TMEM139
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,970,891 - 6,973,394 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,970,887 - 6,974,130 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,211,799 - 7,215,042 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM139
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,167,475 - 112,172,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,170,253 - 112,171,143 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660728,893,511 - 8,896,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem139
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480011,468,819 - 11,470,751 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480011,468,362 - 11,470,732 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000040110   ⟹   ENSSTOP00000029777
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936527736,085 - 739,173 (+)Ensembl
RefSeq Acc Id: XM_021727229   ⟹   XP_021582904
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511812,164,385 - 12,167,869 (-)NCBI
SpeTri2.0NW_004936527736,173 - 739,142 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021582904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000029777.1
GenBank Protein KAG3277317 (Get FASTA)   NCBI Sequence Viewer  
  KAG3277318 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021582904   ⟸   XM_021727229
- Sequence:
Ensembl Acc Id: ENSSTOP00000029777   ⟸   ENSSTOT00000040110


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000032612 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000040110.1 UniProtKB/TrEMBL
InterPro TMEM139 UniProtKB/TrEMBL
NCBI Gene Tmem139 ENTREZGENE
PANTHER PTHR36294 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 139 UniProtKB/TrEMBL
UniProt A0A287D874_ICTTR UniProtKB/TrEMBL