Symbol:
Rer1
Name:
retention in endoplasmic reticulum sorting receptor 1
RGD ID:
12588487
Description:
ENCODES a protein that exhibits acetylcholine receptor binding (inferred); INVOLVED IN neuromuscular junction development (inferred); positive regulation of protein localization to plasma membrane (inferred); protein retention in ER lumen (inferred); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy 1LL (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN cell surface (inferred); cytoplasm (inferred); endoplasmic reticulum (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
RER1 retention in endoplasmic reticulum 1 homolog; retention in endoplasmic reticulum sorting receptor 1, transcript variant X1; retention in endoplasmic reticulum sorting receptor 1, transcript variant X2
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 28,302,503 - 28,313,100 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936737 1,152,937 - 1,164,616 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936737 1,152,937 - 1,164,817 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Rer1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 28,302,503 - 28,313,100 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936737 1,152,937 - 1,164,616 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936737 1,152,937 - 1,164,817 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
RER1 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 2,391,841 - 2,405,436 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 2,391,775 - 2,405,442 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 2,323,280 - 2,336,875 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 2,313,074 - 2,326,734 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 1 2,355,490 - 2,367,350 NCBI Celera 1 249,823 - 263,535 (-) NCBI Celera Cytogenetic Map 1 p36.32 NCBI HuRef 1 1,601,775 - 1,615,592 (+) NCBI HuRef CHM1_1 1 2,310,240 - 2,323,952 (+) NCBI CHM1_1 T2T-CHM13v2.0 1 1,831,110 - 1,845,026 (+) NCBI T2T-CHM13v2.0
Rer1 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 155,158,566 - 155,170,840 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 155,158,567 - 155,170,839 (-) Ensembl GRCm39 Ensembl GRCm38 4 155,074,109 - 155,086,371 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 155,074,110 - 155,086,382 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 154,448,221 - 154,460,406 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 153,917,912 - 153,930,097 (-) NCBI MGSCv36 mm8 Celera 4 157,346,554 - 157,358,733 (-) NCBI Celera Cytogenetic Map 4 E2 NCBI cM Map 4 86.17 NCBI
Rer1 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 170,916,643 - 170,929,073 (-) NCBI GRCr8 mRatBN7.2 5 165,634,567 - 165,646,643 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 165,634,300 - 165,646,750 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 168,340,526 - 168,352,596 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 170,161,940 - 170,174,010 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 170,124,469 - 170,136,539 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 172,476,746 - 172,488,822 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 172,476,747 - 172,488,822 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 175,932,625 - 175,944,701 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 171,875,696 - 171,887,772 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 171,885,922 - 171,898,345 (-) NCBI Celera 5 163,840,333 - 163,852,410 (-) NCBI Celera Cytogenetic Map 5 q36 NCBI
Rer1 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955486 8,791,457 - 8,802,691 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955486 8,791,457 - 8,802,691 (-) NCBI ChiLan1.0 ChiLan1.0
RER1 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 225,849,713 - 225,865,100 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 224,512,336 - 224,526,048 (-) NCBI NHGRI_mPanPan1 PanPan1.1 Ensembl 1 2,257,091 - 2,271,311 (+) Ensembl panpan1.1 panPan2
RER1 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 5 57,278,349 - 57,288,564 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 5 57,278,371 - 57,285,870 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 5 57,354,837 - 57,365,141 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 5 57,480,563 - 57,490,874 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 5 57,480,581 - 57,490,851 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 5 57,471,831 - 57,482,138 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 5 57,364,184 - 57,374,471 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 5 57,753,820 - 57,764,123 (+) NCBI UU_Cfam_GSD_1.0
RER1 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 64,301,199 - 64,311,783 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 64,301,139 - 64,311,526 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 58,710,593 - 58,721,038 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RER1 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 129,155,902 - 129,169,648 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 129,156,067 - 129,169,597 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666054 33,500,564 - 33,514,453 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Rer1 (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000007412 ⟹ ENSSTOP00000006624
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936737 1,152,937 - 1,164,616 (-) Ensembl
RefSeq Acc Id:
XM_013364736 ⟹ XP_013220190
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405058 28,302,503 - 28,313,100 (+) NCBI SpeTri2.0 NW_004936737 1,152,937 - 1,164,817 (-) NCBI
Sequence:
TGACCACTTCCCCAGTACCTGTTGGCCCGCGGCGGAAGACGGTGCTGAAGGGGCTCAGGGAAGCCCTGTGTCGGCCAGGAGCGTTTGGCGGCAGTGGTTCCGGCTGAGCGTGAGGGCTTGAGTCGTGC AGGATCTTAGAGAACATTCAGTGGCACTTCCTAATTTTCAGCTCTGGGCACTGTGCTCTTGGGTCCTGGAAATGTATACATGCTAAAGACTGGACACTGTGGCCTGTTCAGCTGCAAGCCTGTGTTTA AGTTGTGATTAGAAAGCTGTCCACTCGAGACCTAGGGACTCATCAGGTGGCTTGTTGACTTCCACTTCAGAAGTTACAGAATGTCTGAAGGGGACAGTGTTGGAGATTCAGTCCATGGGAAGCCATCA GTGGTGTACAGATTTTTCACACGACTCGGACAGATTTATCAGTCCTGGCTGGACAAGTCCACACCTTACACGGCTGTGCGGTGGGTGGTGACACTGGGCTTGAGCTTTGTCTACATGATTAGAGTTTA CCTGCTACAGGGTTGGTACATCGTGACCTACGCCCTGGGAATCTACCATCTAAATCTTTTCATAGCGTTCCTTTCTCCCAAAGTGGACCCTTCCTTAATGGAAGACTCAGATGATGGCCCTTCCTTAC CAACCAAACAGAATGAGGAATTTCGCCCCTTCATTCGAAGGCTTCCAGAGTTTAAATTTTGGCATGCGGCCACGAAGGGCATCCTGGTGGCAATGGTCTGCACCTTCTTCGAGGCTTTCAATGTCCCG GTGTTCTGGCCGATCCTGGTGATGTACTTCATCATGCTTTTCTGTATCACAATGAAGAGGCAAATAAAGCACATGATTAAATACCGGTACATACCATTCACACATGGAAAGAGGAGATACAAAGGGAA GGAGGACGTGGGCAAGACGTTTGCTAGTTAGAAGCTGGACTGAATCTGGCACACGTGTTCAAGACGGTTTTGAGCCATTGTAACAATGCCTTTTTCTTCACATAAAGTAGTTGATTACAAGGGATTTG AATTTTCTTTTTAAAAAGGAGCCTCAATGATTTGTAACTGAAATACAGGTTCTTGAAGAAACTGGCATTTAAACCAGATTGCATTGATTTCTATTTCAGTGGTGTCCACATGTTTCAAAGGACGGCAT TGTATTAACCGCAGGCTCAAGAGGCCAGGCGGGCAGCAGCCGCAGGAGCAAGGGGTGGGAGGGAGGACAAGAGCGAGGCTACAAGAGGAGCTGGCTGCTCTGCGTGGGGCTGTTTCCCAGCCACGGTG AGGCCGGAGGGACCATGCCAACCCGATTCCTGCGTGCCAGAGAACGTAATGCTGCACAGGTGATTGATTTCAAGTAACTCTGGGGTTCTCATGCCAGTTTCCAAACCTCACCTCACTGGAGGTGTTTT CAAGCTGGCCTCTATCTCGATGACTCAAAACTTTGTTCTTAACTACCATGATTGCTTCTGAGGGCCTGGAATTATAAACATATTATATTTTAA
hide sequence
RefSeq Acc Id:
XM_040287790 ⟹ XP_040143724
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405058 28,302,503 - 28,313,100 (+) NCBI
RefSeq Acc Id:
XP_013220190 ⟸ XM_013364736
- UniProtKB:
I3M9N9 (UniProtKB/TrEMBL)
- Sequence:
MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKG ILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYKGKEDVGKTFAS
hide sequence
RefSeq Acc Id:
XP_040143724 ⟸ XM_040287790
- UniProtKB:
I3M9N9 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSSTOP00000006624 ⟸ ENSSTOT00000007412