Spout1 (SPOUT domain containing methyltransferase 1) - Rat Genome Database

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Gene: Spout1 (SPOUT domain containing methyltransferase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Spout1
Name: SPOUT domain containing methyltransferase 1
RGD ID: 12554222
Description: ENCODES a protein that exhibits miRNA binding (inferred); rRNA (uridine-N3-)-methyltransferase activity (inferred); S-adenosyl-L-methionine binding (inferred); INVOLVED IN maintenance of centrosome location (inferred); miRNA processing (inferred); post-transcriptional regulation of gene expression (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN kinetochore (inferred); mitotic spindle (inferred); spindle pole centrosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative methyltransferase C9orf114 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,516,394 - 196,523,085 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,285,546 - 16,291,534 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,284,921 - 16,291,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Spout1Squirreldevelopmental and epileptic encephalopathy  ISOSPOUT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:28492532
Spout1Squirreldystonia  ISOSPOUT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Dystonic disorderClinVarPMID:28492532
Spout1Squirrelearly infantile epileptic encephalopathy  ISOSPOUT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:28492532
Spout1Squirrelmyoclonic-atonic epilepsy  ISOSPOUT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Undetermined early-onset epileptic encephalopathyClinVarPMID:25741868 and PMID:38260255
Spout1SquirrelNeurodevelopmental Disorders  ISOSPOUT1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 and PMID:38260255
Spout1Squirrelprimary coenzyme Q10 deficiency 7  ISOSPOUT1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndromeClinVarPMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Spout1Squirrelmaintenance of centrosome location involved_inIEAPANTHER:PTN000254710150520179 TreeGrafterGO_REF:0000118
Spout1Squirrelmaintenance of centrosome location involved_inIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1SquirrelmiRNA processing involved_inIEAPANTHER:PTN000254710150520179 TreeGrafterGO_REF:0000118
Spout1SquirrelmiRNA processing involved_inIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1Squirrelpost-transcriptional regulation of gene expression acts_upstream_of_positive_effectIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1SquirrelrRNA base methylation involved_inIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Spout1Squirrelkinetochore located_inIEAPANTHER:PTN000254710150520179 TreeGrafterGO_REF:0000118
Spout1Squirrelkinetochore located_inIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1Squirrelmitotic spindle located_inIEAPANTHER:PTN000254710150520179 TreeGrafterGO_REF:0000118
Spout1Squirrelmitotic spindle located_inIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1Squirrelspindle pole centrosome located_inIEAPANTHER:PTN000254710150520179 TreeGrafterGO_REF:0000118
Spout1Squirrelspindle pole centrosome located_inIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Spout1SquirrelmiRNA binding enablesIEAPANTHER:PTN000254710150520179 TreeGrafterGO_REF:0000118
Spout1SquirrelmiRNA binding enablesIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1Squirrelprotein binding enablesISOUniProtKB:Q0VD869068941 PMID:21750715UniProtPMID:21750715
Spout1SquirrelrRNA (uridine-N3-)-methyltransferase activity enablesIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107
Spout1SquirrelS-adenosyl-L-methionine binding enablesIEAUniProtKB:Q5T280 and ensembl:ENSP00000354812150520179 EnsemblGO_REF:0000107

PMID:30032202  



Spout1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,516,394 - 196,523,085 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,285,546 - 16,291,534 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,284,921 - 16,291,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPOUT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,819,651 - 128,829,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,819,651 - 128,829,794 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,581,930 - 131,592,073 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,624,166 - 130,631,906 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,663,898 - 128,671,639NCBI
Celera9102,235,130 - 102,242,872 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,190,929 - 101,201,101 (-)NCBIHuRef
CHM1_19131,732,931 - 131,743,102 (-)NCBICHM1_1
T2T-CHM13v2.09141,024,452 - 141,034,597 (-)NCBIT2T-CHM13v2.0
Spout1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,063,458 - 30,068,506 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl230,063,465 - 30,068,471 (-)EnsemblGRCm39 Ensembl
GRCm38230,173,446 - 30,178,494 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,173,453 - 30,178,459 (-)EnsemblGRCm38mm10GRCm38
MGSCv37230,028,967 - 30,033,975 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,995,482 - 30,000,464 (-)NCBIMGSCv36mm8
Celera229,877,319 - 29,882,327 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.29NCBI
Spout1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,849,007 - 33,856,564 (-)NCBIGRCr8
mRatBN7.2313,451,191 - 13,458,918 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,451,202 - 13,493,355 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,523,176 - 16,530,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.031,416,850 - 1,424,346 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,361,397 - 23,368,662 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,743,890 - 8,751,634 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,743,882 - 8,751,324 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,096,386 - 14,104,134 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,187,007 - 9,191,739 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera38,225,235 - 8,229,966 (-)NCBICelera
Cytogenetic Map3p12NCBI
Spout1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,204,040 - 1,211,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,202,987 - 1,211,052 (-)NCBIChiLan1.0ChiLan1.0
SPOUT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,518,731 - 10,529,032 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,521,078 - 10,531,381 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,945,345 - 99,953,692 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,612,741 - 128,620,510 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,613,437 - 128,620,450 (-)Ensemblpanpan1.1panPan2
SPOUT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,802,145 - 54,811,709 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,802,214 - 54,810,039 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,997,645 - 54,005,543 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,723,175 - 55,731,078 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,723,229 - 55,731,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,483,818 - 54,491,711 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,796,597 - 54,804,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,889,984 - 54,897,891 (+)NCBIUU_Cfam_GSD_1.0
SPOUT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,157,176 - 269,167,087 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,157,173 - 269,167,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,173,218 - 303,183,186 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPOUT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,314,991 - 9,323,455 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666096153,700 - 162,161 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spout1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,186,901 - 6,196,374 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,186,779 - 6,193,519 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005321051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040286457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000015665   ⟹   ENSSTOP00000014022
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648716,285,546 - 16,291,534 (-)Ensembl
RefSeq Acc Id: XM_005321051   ⟹   XP_005321108
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,516,394 - 196,523,085 (-)NCBI
SpeTri2.0NW_00493648716,284,921 - 16,291,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286457   ⟹   XP_040142391
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,516,394 - 196,523,028 (-)NCBI
Protein RefSeqs XP_005321108 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142391 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014022.3
GenBank Protein KAG3288127 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321108   ⟸   XM_005321051
- Peptide Label: isoform X1
- UniProtKB: I3MQ47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142391   ⟸   XM_040286457
- Peptide Label: isoform X2
- UniProtKB: I3MQ47 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000014022   ⟸   ENSSTOT00000015665



1 to 15 of 15 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000015657 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015665.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
  3.40.1280.10 UniProtKB/TrEMBL
InterPro Alpha/beta_knot_MTases UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  Put_MeTrfase UniProtKB/TrEMBL
  tRNA_m1G_MTases_N UniProtKB/TrEMBL
NCBI Gene Spout1 ENTREZGENE
PANTHER METHYLTRANSFERASE C9ORF114-RELATED UniProtKB/TrEMBL
  PTHR12150 UniProtKB/TrEMBL
Pfam Methyltrn_RNA_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
  SSF75217 UniProtKB/TrEMBL
UniProt I3MQ47 ENTREZGENE, UniProtKB/TrEMBL
1 to 15 of 15 rows