Scgb2a2 (secretoglobin family 2A member 2) - Rat Genome Database

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Pathways
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Gene: Scgb2a2 (secretoglobin family 2A member 2) Ictidomys tridecemlineatus
Analyze
Symbol: Scgb2a2 (Ensembl: SCGB2A1)
Name: secretoglobin family 2A member 2 (Ensembl:mammaglobin-A-like)
RGD ID: 12545701
Description: INVOLVED IN androgen receptor signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101957447; mammaglobin-A; mammaglobin-A-like
RGD Orthologs
Human
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,789,324 - 10,792,427 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581903,141 - 967,239 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581903,152 - 906,087 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Scgb2a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,789,324 - 10,792,427 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581903,141 - 967,239 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581903,152 - 906,087 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCGB2A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,270,158 - 62,273,160 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,270,158 - 62,273,160 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,037,630 - 62,040,632 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,794,206 - 61,797,204 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,794,205 - 61,797,204NCBI
Celera1159,367,094 - 59,370,099 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,366,037 - 58,369,049 (+)NCBIHuRef
CHM1_11161,920,508 - 61,923,505 (+)NCBICHM1_1
T2T-CHM13v2.01162,259,408 - 62,262,421 (+)NCBIT2T-CHM13v2.0
SCGB2A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,504,649 - 63,507,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,547,428 - 64,550,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,635,056 - 57,638,047 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,991,797 - 60,994,782 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,991,797 - 60,994,777 (+)Ensemblpanpan1.1panPan2
SCGB2A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,313,503 - 54,316,375 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,885,756 - 52,886,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,333,824 - 55,370,003 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11854,430,734 - 54,431,802 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,003,906 - 54,004,890 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,800,393 - 54,801,434 (-)NCBIUU_Cfam_GSD_1.0
UU_Cfam_GSD_1.01854,868,805 - 54,869,473 (-)NCBIUU_Cfam_GSD_1.0
PHEROC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,375,864 - 9,381,800 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,376,019 - 9,379,433 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,697,812 - 8,701,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013361297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013361297   ⟹   XP_013216751
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494710,789,324 - 10,792,427 (-)NCBI
SpeTri2.0NW_004936581903,152 - 906,087 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013216751 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005519.2
  ENSSTOP00000028076.1
GenBank Protein KAG3284883 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013216751   ⟸   XM_013361297
- UniProtKB: I3M7D7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006184 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006170.3 UniProtKB/TrEMBL
  ENSSTOT00000032910.1 UniProtKB/TrEMBL
InterPro Secretoglobin UniProtKB/TrEMBL
  Secretoglobin_sf UniProtKB/TrEMBL
NCBI Gene LOC101957447 ENTREZGENE
PANTHER MAMMAGLOBIN-B UniProtKB/TrEMBL
  MAMMAGLOBIN-RELATED UniProtKB/TrEMBL
Pfam Uteroglobin UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  SCGB UniProtKB/TrEMBL
Superfamily-SCOP SSF48201 UniProtKB/TrEMBL
UniProt I3M7D7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Scgb2a2  secretoglobin family 2A member 2  LOC101957447  mammaglobin-A-like  Symbol and/or name change 5135510 APPROVED