Pygl (glycogen phosphorylase L) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Pygl (glycogen phosphorylase L) Ictidomys tridecemlineatus
Analyze
Symbol: Pygl
Name: glycogen phosphorylase L
RGD ID: 12535883
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); glycogen phosphorylase activity (ortholog); identical protein binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen degradation pathway; glycogen metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); glycogen storage disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycogen phosphorylase, liver form; phosphorylase, glycogen, liver
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864059,463,043 - 59,498,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649514,692,332 - 14,730,231 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649514,692,688 - 14,728,663 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pygl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864059,463,043 - 59,498,992 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649514,692,332 - 14,730,231 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649514,692,688 - 14,728,663 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYGL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381450,905,217 - 50,944,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1450,857,891 - 50,944,483 (-)EnsemblGRCh38hg38GRCh38
GRCh371451,371,935 - 51,411,201 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361450,441,687 - 50,480,984 (-)NCBINCBI36Build 36hg18NCBI36
Build 341450,441,688 - 50,480,984NCBI
Celera1431,238,983 - 31,278,301 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1431,497,509 - 31,536,798 (-)NCBIHuRef
CHM1_11451,310,446 - 51,349,770 (-)NCBICHM1_1
T2T-CHM13v2.01445,111,656 - 45,150,908 (-)NCBIT2T-CHM13v2.0
Pygl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391270,237,589 - 70,274,457 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1270,237,585 - 70,278,262 (-)EnsemblGRCm39 Ensembl
GRCm381270,190,815 - 70,227,683 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1270,190,811 - 70,231,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv371271,291,802 - 71,328,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361271,109,416 - 71,146,222 (-)NCBIMGSCv36mm8
Celera1271,292,479 - 71,327,360 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.01NCBI
Pygl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8694,433,558 - 94,476,219 (-)NCBIGRCr8
mRatBN7.2688,697,598 - 88,740,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,697,593 - 88,740,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,096,834 - 89,133,820 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0689,396,285 - 89,433,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,835,817 - 88,872,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,597,759 - 92,643,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,597,706 - 92,643,847 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,045,144 - 102,091,119 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4692,298,339 - 92,341,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1692,301,796 - 92,344,803 (-)NCBI
Celera687,191,869 - 87,228,313 (-)NCBICelera
Cytogenetic Map6q24NCBI
Pygl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540911,970,112 - 12,007,102 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540911,970,112 - 12,007,102 (+)NCBIChiLan1.0ChiLan1.0
PYGL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21552,042,469 - 52,082,068 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11451,234,331 - 51,299,970 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01431,494,172 - 31,533,545 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11449,793,210 - 49,832,786 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1449,746,309 - 49,832,786 (-)Ensemblpanpan1.1panPan2
PYGL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1827,264,778 - 27,307,977 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl827,223,273 - 27,307,977 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha827,018,142 - 27,061,230 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0827,443,863 - 27,486,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl827,401,678 - 27,486,986 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1827,098,985 - 27,141,894 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0827,171,662 - 27,214,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0827,519,107 - 27,562,008 (-)NCBIUU_Cfam_GSD_1.0
PYGL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1180,620,314 - 180,719,979 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11180,645,849 - 180,704,124 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21200,933,155 - 200,991,988 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PYGL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12427,987,676 - 28,030,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2427,987,649 - 28,030,869 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605316,283,872 - 16,325,710 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pygl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473117,990,977 - 18,028,186 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473117,990,877 - 18,028,351 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000011971   ⟹   ENSSTOP00000010740
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649514,692,332 - 14,730,231 (+)Ensembl
RefSeq Acc Id: XM_005322860   ⟹   XP_005322917
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864059,463,043 - 59,498,992 (-)NCBI
SpeTri2.0NW_00493649514,692,688 - 14,728,663 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322917 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010740.2
GenBank Protein KAG3261198 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005322917   ⟸   XM_005322860
- UniProtKB: I3MIB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000010740   ⟸   ENSSTOT00000011971


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011960 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011971.3 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro Glycg_phsphrylas UniProtKB/TrEMBL
  Glyco_trans_35 UniProtKB/TrEMBL
  Pyridoxal_P_attach_site UniProtKB/TrEMBL
NCBI Gene Pygl ENTREZGENE
PANTHER GLYCOGEN PHOSPHORYLASE, LIVER FORM UniProtKB/TrEMBL
  PTHR11468 UniProtKB/TrEMBL
Pfam Phosphorylase UniProtKB/TrEMBL
PIRSF Pprylas_GlgP UniProtKB/TrEMBL
PROSITE PHOSPHORYLASE UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt I3MIB4 ENTREZGENE, UniProtKB/TrEMBL