Dbt (dihydrolipoamide branched chain transacylase E2) - Rat Genome Database

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Gene: Dbt (dihydrolipoamide branched chain transacylase E2) Ictidomys tridecemlineatus
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Symbol: Dbt
Name: dihydrolipoamide branched chain transacylase E2
RGD ID: 12521139
Description: ENCODES a protein that exhibits branched-chain alpha-keto acid dehydrogenase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (inferred); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); maple syrup urine disease (ortholog); FOUND IN branched-chain alpha-ketoacid dehydrogenase complex (inferred); catalytic complex (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,537,454 - 110,580,910 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748342,394 - 386,000 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748342,655 - 386,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dbt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,537,454 - 110,580,910 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748342,394 - 386,000 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748342,655 - 386,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DBT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,186,919 - 100,249,834 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,186,919 - 100,249,834 (-)EnsemblGRCh38hg38GRCh38
GRCh371100,652,475 - 100,715,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,425,066 - 100,487,997 (-)NCBINCBI36Build 36hg18NCBI36
Build 341100,371,756 - 100,427,411NCBI
Celera198,909,336 - 98,972,208 (-)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,775,207 - 98,838,837 (-)NCBIHuRef
CHM1_11100,768,800 - 100,831,605 (-)NCBICHM1_1
T2T-CHM13v2.01100,035,014 - 100,097,802 (-)NCBIT2T-CHM13v2.0
Dbt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,306,776 - 116,343,630 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,306,719 - 116,343,630 (+)EnsemblGRCm39 Ensembl
GRCm383116,513,070 - 116,549,981 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,513,070 - 116,549,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv373116,215,997 - 116,252,899 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,505,145 - 116,541,403 (+)NCBIMGSCv36mm8
Celera3122,940,011 - 122,977,028 (+)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.37NCBI
Dbt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,166,660 - 207,195,528 (+)NCBIGRCr8
mRatBN7.22204,481,744 - 204,510,612 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,481,737 - 204,510,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2212,138,239 - 212,167,245 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,047,347 - 210,076,203 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,864,426 - 204,893,276 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,563,783 - 219,592,651 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,563,783 - 219,592,650 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,625,211 - 237,654,081 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,759,312 - 212,788,180 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,731,165 - 212,742,429 (+)NCBI
Celera2196,974,438 - 197,002,611 (+)NCBICelera
Cytogenetic Map2q42NCBI
Dbt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554354,973,830 - 5,017,816 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554354,975,664 - 5,005,126 (-)NCBIChiLan1.0ChiLan1.0
DBT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,778,646 - 126,854,613 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,936,695 - 126,011,918 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01102,852,585 - 102,907,146 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,566,152 - 101,621,850 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1101,567,551 - 101,621,850 (-)Ensemblpanpan1.1panPan2
DBT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,753,233 - 49,805,493 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,753,323 - 49,805,882 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,424,469 - 52,476,285 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0650,100,981 - 50,152,844 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl650,101,072 - 50,153,426 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,792,722 - 49,844,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,771,509 - 49,823,578 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0650,201,398 - 50,255,118 (+)NCBIUU_Cfam_GSD_1.0
DBT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,875,002 - 117,936,612 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,884,657 - 117,924,006 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24129,512,220 - 129,548,961 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DBT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12033,088,452 - 33,157,693 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2033,088,496 - 33,140,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603824,899,712 - 24,968,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dbt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248573,056,781 - 3,138,396 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248573,056,799 - 3,138,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000013516   ⟹   ENSSTOP00000012112
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936748342,394 - 386,000 (-)Ensembl
RefSeq Acc Id: XM_005339685   ⟹   XP_005339742
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058110,537,454 - 110,580,910 (-)NCBI
SpeTri2.0NW_004936748342,655 - 386,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040289038   ⟹   XP_040144972
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058110,537,454 - 110,580,149 (-)NCBI
RefSeq Acc Id: XM_040289039   ⟹   XP_040144973
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405058110,537,454 - 110,580,149 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005339742 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144972 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012112.2
GenBank Protein KAG3283669 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005339742   ⟸   XM_005339685
- Peptide Label: isoform X1
- UniProtKB: I3ML56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144973   ⟸   XM_040289039
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144972   ⟸   XM_040289038
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000012112   ⟸   ENSSTOT00000013516

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013513 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013516.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/TrEMBL
  3.30.559.10 UniProtKB/TrEMBL
  4.10.320.10 UniProtKB/TrEMBL
InterPro 2-oxoA_DH_lipoyl-BS UniProtKB/TrEMBL
  2-oxoacid_DH_actylTfrase UniProtKB/TrEMBL
  2-oxoacid_DH_E2_comp UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/TrEMBL
  E3-bd_dom_sf UniProtKB/TrEMBL
  PSBD UniProtKB/TrEMBL
  Single_hybrid_motif UniProtKB/TrEMBL
NCBI Gene Dbt ENTREZGENE
PANTHER DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX UniProtKB/TrEMBL
  LIPOAMIDE ACYLTRANSFERASE COMPONENT OF BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE COMPLEX, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam 2-oxoacid_dh UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/TrEMBL
  E3_binding UniProtKB/TrEMBL
PROSITE BIOTINYL_LIPOYL UniProtKB/TrEMBL
  LIPOYL UniProtKB/TrEMBL
  PSBD UniProtKB/TrEMBL
Superfamily-SCOP CoA-dependent acyltransferases UniProtKB/TrEMBL
  SSF47005 UniProtKB/TrEMBL
  SSF51230 UniProtKB/TrEMBL
UniProt I3ML56 ENTREZGENE, UniProtKB/TrEMBL