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Gene: Clmp (CXADR like membrane protein) Ictidomys tridecemlineatus

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Symbol:

Clmp

Name:

CXADR like membrane protein

RGD ID:

12519276

Description:

INVOLVED IN digestive tract development (inferred); postsynaptic modulation of chemical synaptic transmission (inferred); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN postsynaptic membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC101977288

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	104,667,596 - 104,763,997 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	7,587,272 - 7,685,144 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	7,591,223 - 7,685,040 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

genetic disease (ISO)

intestinal pseudo-obstruction (ISO)

schizophrenia (ISO)

short bowel syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

digestive tract development (IEA)

postsynaptic modulation of chemical synaptic transmission (IEA)

Cellular Component

bicellular tight junction (IEA)

cell surface (IEA)

cytoplasmic microtubule (IEA)

membrane (IEA)

postsynaptic membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Clmp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	104,667,596 - 104,763,997 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	7,587,272 - 7,685,144 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	7,591,223 - 7,685,040 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLMP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	123,069,872 - 123,195,248 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	123,069,872 - 123,195,291 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	122,940,580 - 123,065,956 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	122,448,230 - 122,571,217 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	120,102,350 - 120,225,315 (-)	NCBI		Celera
Cytogenetic Map	11	q24.1	NCBI
HuRef	11	118,884,692 - 119,007,600 (-)	NCBI		HuRef
CHM1_1	11	122,829,032 - 122,951,924 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	123,098,457 - 123,223,763 (-)	NCBI		T2T-CHM13v2.0

Clmp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	40,596,975 - 40,696,849 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	40,597,258 - 40,696,615 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	40,682,123 - 40,785,553 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,685,962 - 40,785,319 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	40,494,047 - 40,592,129 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	40,437,033 - 40,535,115 (+)	NCBI		MGSCv36	mm8
Celera	9	37,919,429 - 38,017,479 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI
cM Map	9	21.42	NCBI

Clmp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,957,639 - 50,065,959 (+)	NCBI		GRCr8
mRatBN7.2	8	41,060,527 - 41,168,841 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	41,060,799 - 41,168,838 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	46,559,569 - 46,668,056 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	44,838,179 - 44,946,657 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	42,705,779 - 42,814,242 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	44,846,685 - 44,975,460 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	44,847,157 - 44,975,457 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	46,020,805 - 46,148,061 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	43,661,696 - 43,769,479 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	43,670,461 - 43,778,242 (+)	NCBI
Celera	8	40,662,471 - 40,768,359 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Clmp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	23,876,003 - 23,970,119 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	23,876,003 - 23,984,603 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLMP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	123,771,000 - 123,892,154 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	124,874,977 - 124,997,290 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	117,902,792 - 118,023,936 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	121,824,389 - 121,942,055 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	121,824,398 - 121,942,055 (-)	Ensembl	panpan1.1		panPan2

CLMP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	11,255,054 - 11,289,578 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	11,267,038 - 11,286,682 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	11,246,302 - 11,345,522 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	11,141,243 - 11,240,485 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	11,141,239 - 11,240,456 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	11,244,300 - 11,343,931 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	11,175,179 - 11,276,711 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	11,221,449 - 11,320,980 (+)	NCBI		UU_Cfam_GSD_1.0

CLMP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	49,989,767 - 50,093,417 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	49,989,967 - 50,094,223 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	55,394,444 - 55,402,185 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLMP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	114,461,052 - 114,575,178 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	114,462,833 - 114,575,154 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	11,630,291 - 11,668,135 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clmp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624880	1,965,476 - 2,059,420 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624880	1,965,264 - 2,063,241 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005328393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000003764 ⟹ ENSSTOP00000003371

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936542	7,591,651 - 7,614,255 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000032361 ⟹ ENSSTOP00000027690

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936542	7,587,272 - 7,685,144 (-)	Ensembl

RefSeq Acc Id:

XM_005328393 ⟹ XP_005328450

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	104,667,596 - 104,763,997 (-)	NCBI
SpeTri2.0	NW_004936542	7,591,223 - 7,685,040 (-)	NCBI

Sequence:

show sequence

TTTTTCTTTCCAAACAGGGAAAAGTGTTCCTTGAAGCAGTAGTGCCTTTCCGACTCGCCTTCTT
TCCCCCGACCCTACTCCGGGCTCGGGTCCGAGTGCGAGCTAGTGGGGCGAGCGCTGGAAGCCCC
ACGGTGCCTGGGAGCGCAAGGCGCCGGGACCCGGGAGAGGGGCGCGGGGACACAAGGCGTGGGG
AGGGCTGCTGCGCCCGCACATGGCTGCAGCCCCCCGCGCGCACCCCGAAGCGCCGCGCCCAGCT
ATCCAAAGGTCTGTCGGCTGCGCCCAGCCGCCCAGCAACCAGGCAGCCGCTGAGCGGGGAAGTG
CCCGCGTCCGAGAATCGGGATGTCCCTCCTCCCGCTCCTCTTGCTAGTTTCCTATTATGTTGGA
ACCTTGGGAACTCACACTGAGATCAAGAGAGTGGCAGAGGAAAAGGTCACTTTGCCCTGCCACC
ATCAACTGGGGCTTCCAGAAAAAGACACGCTTGATATCGAATGGCTGCTCACTGATAATGAAGG
AAACCAAAAAGTGGTGATCACTTACTCCAGTCGTCATGTCTACAATAACTTAACTGAGGAACAG
AAGGGCCGAGTGGCATTTGCTTCCAATTTCCTGGCAGGAGATGCTTCTCTGCAAATCGAGCCTC
TAAAACCCAGTGATGAGGGCAGGTATACCTGCAAGGTGAAGAATTCAGGGCGTTATGTGTGGAG
CCACGTCATCTTAAAAGTCTTAGTGAGACCATCCAAGCCCAAGTGTGAGTTGGAAGGAGACCTG
ACAGAAGGAAGTGATCTGACTCTGCAATGTGAGTCATCCTCTGGCACAAAGCCCATTGTGTATT
ACTGGCAGCGAATCCCGGAGAAAGAGGGAGAGGATGAACATTTGCCTCCCAAATCCAGGATTGA
CTACAACAATCCTGGCAGAGTTCTGTTGCAGAATCTCACCATGTCTTCTTCTGGGCTCTACCAG
TGCACAGCAGGCAATGAGGCTGGGAAGGAAAGCTGTGTGGTTCGAGTGACTGTACAGTATGTAC
AAAGCATCGGCATGGTTGCAGGAGCAGTGACAGGTATTGTGGCTGGAGCCCTGCTGATTTTCCT
CTTGGTGTGGCTGTTAATCCGAAGGAAAGACAAAGAGAGATATGAGGAAGAAGAGAGACCAAAT
GAAATTCGAGAAGATGCTGAAGCCCCCAAAGCCCGGCTTGTGAAACCTAGCTCCTCTTCCTCAG
GCTCTCGGAGCTCACGCTCCGGTTCTTCTTCCACTCGCTCCACAGCAAATAGTGCCTCACGCAG
CCAGCGGACACTGTCAACTGAAGCAGCACCCCAGCCTGGGCTGGCCACCCAGGCATACAGCCTA
GTGGGGCCTGAAGTGAGAGGCTCTGAACCAAAGAAAGTTCATCATGCCACCCTGACCAAAGCAG
AAAACACACCCAGCATGATCCCCAGCCAGAGCAGAGCCTTCCAAACTGTCTGAATTACAGTGGA
CTTGACTCCCATGCTTTCCTAGGAGTCAGGATCTTAGGACTCTTCTAGTCATTGGAGTTCAGTC
ACCAGCCACACAACCCACTCAAATTAGATAAGAGGTCATTTAAGTACCAGTGAACATCACATGG
AACAGATTCAGATGAGCACTTTACTTATACACCACCAAATGAGCAAAAGGATGTAAGCTGATCA
TCTCCAAAAAGGCACCTATTGACCTTTAGACCAGAGTTGGGGGGCAGAGGGAACTAGGAATACA
AATCTGTCTATTGACCAGGACCTGTGGGGAGGAGGTTGGGGAAAAGTGAAGTGAATGCTCCTAA
AACTACTCACCAGGGATGGTTTGTATCAATACTTCAATTCACTATTGTCAAGAAGAAATGAGGT
GTTTTTCATAAATTTTCTATGCATTTCTGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005328450	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000003371.3
	ENSSTOP00000027690.1
GenBank Protein	KAG3286770	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005328450 ⟸ XM_005328393

- UniProtKB:

A0A287D2F2 (UniProtKB/TrEMBL), I3M2X5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLLPLLLLVSYYVGTLGTHTEIKRVAEEKVTLPCHHQLGLPEKDTLDIEWLLTDNEGNQKVVI
TYSSRHVYNNLTEEQKGRVAFASNFLAGDASLQIEPLKPSDEGRYTCKVKNSGRYVWSHVILKV
LVRPSKPKCELEGDLTEGSDLTLQCESSSGTKPIVYYWQRIPEKEGEDEHLPPKSRIDYNNPGR
VLLQNLTMSSSGLYQCTAGNEAGKESCVVRVTVQYVQSIGMVAGAVTGIVAGALLIFLLVWLLI
RRKDKERYEEEERPNEIREDAEAPKARLVKPSSSSSGSRSSRSGSSSTRSTANSASRSQRTLST
EAAPQPGLATQAYSLVGPEVRGSEPKKVHHATLTKAENTPSMIPSQSRAFQTV

hide sequence

Ensembl Acc Id:

ENSSTOP00000027690 ⟸ ENSSTOT00000032361

Ensembl Acc Id:

ENSSTOP00000003371 ⟸ ENSSTOT00000003764

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003773	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003764.3	UniProtKB/TrEMBL
	ENSSTOT00000032361.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CLMP	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
NCBI Gene	Clmp	ENTREZGENE
PANTHER	CXADR-LIKE MEMBRANE PROTEIN	UniProtKB/TrEMBL
	PTHR44783	UniProtKB/TrEMBL
Pfam	Ig_2	UniProtKB/TrEMBL
	V-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	IGv	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A287D2F2	ENTREZGENE, UniProtKB/TrEMBL
	I3M2X5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-08-09	Clmp	CXADR like membrane protein	LOC101977288	CXADR like membrane protein	Symbol and/or name change	5135510	APPROVED
2021-03-26	LOC101977288	CXADR like membrane protein	Clmp	CXADR like membrane protein	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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